Wall clock time and date at job start Sat Apr 11 2020 00:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40086 * 126.03748 * 2 1 4 4 C 1.30844 * 108.20537 * 180.02562 * 3 2 1 5 5 C 1.39868 * 108.20218 * 0.02562 * 4 3 2 6 6 C 1.34949 * 126.04009 * 179.69941 * 2 1 3 7 7 C 1.50703 * 126.12243 * 359.97438 * 6 2 1 8 8 O 1.42905 * 109.47061 * 180.02562 * 7 6 2 9 9 C 1.42891 * 113.99971 * 179.97438 * 8 7 6 10 10 C 1.50708 * 109.47146 * 179.97438 * 9 8 7 11 11 O 1.21277 * 119.99429 * 359.97438 * 10 9 8 12 12 N 1.34771 * 119.99782 * 179.97438 * 10 9 8 13 13 C 1.46922 * 120.63469 * 0.02562 * 12 10 9 14 14 C 1.53194 * 108.77634 * 233.58295 * 13 12 10 15 15 C 1.53040 * 109.31623 * 305.36548 * 14 13 12 16 16 C 1.53044 * 109.53312 * 61.35948 * 15 14 13 17 17 H 1.09000 * 109.49274 * 58.62857 * 16 15 14 18 18 N 1.46502 * 109.49318 * 178.68108 * 16 15 14 19 19 C 1.36936 * 120.00384 * 205.00143 * 18 16 15 20 20 H 1.08006 * 119.99679 * 0.02562 * 19 18 16 21 21 C 1.38810 * 120.00333 * 180.02562 * 19 18 16 22 22 N 1.31616 * 119.99824 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99919 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46949 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46589 * 120.00314 * 23 21 19 26 26 H 1.48498 * 109.47063 * 240.00377 * 23 21 19 27 27 C 1.46929 * 120.62556 * 179.72011 * 12 10 9 28 28 H 1.09002 * 109.47391 * 90.01945 * 1 2 3 29 29 H 1.09001 * 109.46813 * 330.02001 * 1 2 3 30 30 H 1.09004 * 109.47041 * 210.02128 * 1 2 3 31 31 H 1.07998 * 125.89908 * 180.02562 * 4 3 2 32 32 H 1.07994 * 126.04191 * 179.97438 * 5 4 3 33 33 H 1.09005 * 109.47140 * 300.00119 * 7 6 2 34 34 H 1.08994 * 109.47706 * 60.00106 * 7 6 2 35 35 H 1.09005 * 109.47256 * 299.99587 * 9 8 7 36 36 H 1.09004 * 109.47622 * 59.99832 * 9 8 7 37 37 H 1.08994 * 109.58826 * 353.37480 * 13 12 10 38 38 H 1.09009 * 109.58632 * 113.79755 * 13 12 10 39 39 H 1.09004 * 109.49504 * 65.32079 * 14 13 12 40 40 H 1.09005 * 109.49903 * 185.37786 * 14 13 12 41 41 H 1.08997 * 109.46129 * 181.38400 * 15 14 13 42 42 H 1.09003 * 109.45620 * 301.36161 * 15 14 13 43 43 H 0.97002 * 120.00110 * 25.00863 * 18 16 15 44 44 H 0.97003 * 119.99702 * 179.97438 * 22 21 19 45 45 H 1.09003 * 109.58615 * 246.20164 * 27 12 10 46 46 H 1.08997 * 109.59022 * 6.62568 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5347 0.7321 -0.0006 5 6 3.5437 -0.6666 -0.0015 6 6 2.2590 -1.0912 0.0057 7 6 1.7973 -2.5258 0.0138 8 8 2.9340 -3.3919 0.0188 9 6 2.6051 -4.7824 0.0272 10 6 3.8722 -5.5983 0.0312 11 8 4.9506 -5.0435 0.0267 12 7 3.8067 -6.9444 0.0397 13 6 2.5077 -7.6308 0.0446 14 6 2.4746 -8.6152 1.2180 15 6 3.6805 -9.5529 1.1264 16 6 4.9717 -8.7363 1.2171 17 1 4.9874 -8.1837 2.1565 18 7 6.1252 -9.6377 1.1610 19 6 7.3182 -9.2586 1.7162 20 1 7.4086 -8.2952 2.1960 21 6 8.4112 -10.1125 1.6626 22 7 8.3012 -11.2864 1.0775 23 14 10.0388 -9.5950 2.4195 24 1 9.9010 -8.2397 3.0106 25 1 10.4204 -10.5610 3.4808 26 1 11.0884 -9.5731 1.3692 27 6 5.0333 -7.7535 0.0375 28 1 -0.3634 -0.0003 -1.0277 29 1 -0.3633 0.8902 0.5135 30 1 -0.3633 -0.8898 0.5142 31 1 4.4054 1.3710 -0.0003 32 1 4.4211 -1.2963 -0.0025 33 1 1.1972 -2.7093 0.9051 34 1 1.1966 -2.7192 -0.8748 35 1 2.0216 -5.0124 0.9187 36 1 2.0212 -5.0231 -0.8612 37 1 1.7082 -6.8990 0.1588 38 1 2.3778 -8.1739 -0.8917 39 1 2.5134 -8.0631 2.1571 40 1 1.5550 -9.1992 1.1771 41 1 3.6460 -10.2701 1.9464 42 1 3.6544 -10.0862 0.1761 43 1 6.0440 -10.5031 0.7304 44 1 9.0652 -11.8829 1.0397 45 1 5.1047 -8.3062 -0.8993 46 1 5.9006 -7.1025 0.1471 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208408207.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:44 Heat of formation + Delta-G solvation = 21.532631 kcal Electronic energy + Delta-G solvation = -26837.700506 eV Core-core repulsion = 22958.125299 eV Total energy + Delta-G solvation = -3879.575207 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.44057 -40.05651 -38.15442 -36.99878 -34.51720 -33.63264 -32.38020 -31.59485 -31.18220 -29.08417 -27.70273 -27.04552 -26.14624 -24.68063 -23.90531 -21.93857 -21.33132 -20.41582 -20.16035 -18.92359 -17.51507 -17.16721 -17.10579 -16.79885 -16.20174 -15.76116 -15.51716 -14.93917 -14.68863 -14.55551 -14.21703 -14.03475 -13.89609 -13.65692 -13.46621 -13.19832 -13.00201 -12.88667 -12.70962 -12.53623 -12.40787 -12.18864 -11.86229 -11.38023 -11.08996 -10.91337 -10.86390 -10.69637 -10.61794 -10.26352 -10.18062 -9.84656 -9.75667 -9.51824 -9.48271 -9.08938 -8.69033 -8.38484 -7.00935 -5.79416 -3.09265 1.57179 2.05583 2.68179 2.72773 2.78060 3.44928 3.51685 3.54108 3.60652 4.21659 4.28633 4.51808 4.57444 4.67708 4.69474 4.74249 4.81664 4.86946 4.90467 4.95666 5.00253 5.04272 5.18240 5.44503 5.46099 5.49078 5.54690 5.58554 5.75089 5.87373 5.98349 6.02707 6.12300 6.17028 6.30617 6.45487 6.49546 6.55170 6.69917 6.77771 6.81020 6.98810 7.46332 7.58616 7.72482 8.34522 8.39220 9.50818 10.04193 10.39277 11.42822 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016855 B = 0.002436 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.799536 B =11489.730778 C =12897.985042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.375 5.375 3 N -0.296 5.296 4 C 0.045 3.955 5 C -0.237 4.237 6 C 0.071 3.929 7 C 0.131 3.869 8 O -0.348 6.348 9 C 0.047 3.953 10 C 0.510 3.490 11 O -0.517 6.517 12 N -0.606 5.606 13 C 0.106 3.894 14 C -0.130 4.130 15 C -0.127 4.127 16 C 0.168 3.832 17 H 0.052 0.948 18 N -0.718 5.718 19 C -0.242 4.242 20 H 0.073 0.927 21 C -0.011 4.011 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.094 3.906 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.186 0.814 32 H 0.158 0.842 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.385 0.615 44 H 0.255 0.745 45 H 0.062 0.938 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.620 15.566 -3.342 27.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.160 5.160 3 N -0.117 5.117 4 C -0.140 4.140 5 C -0.266 4.266 6 C -0.055 4.055 7 C 0.052 3.948 8 O -0.265 6.265 9 C -0.033 4.033 10 C 0.296 3.704 11 O -0.392 6.392 12 N -0.342 5.342 13 C -0.017 4.017 14 C -0.169 4.169 15 C -0.165 4.165 16 C 0.057 3.943 17 H 0.070 0.930 18 N -0.359 5.359 19 C -0.373 4.373 20 H 0.091 0.909 21 C -0.207 4.207 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.204 1.204 25 H -0.219 1.219 26 H -0.218 1.218 27 C -0.030 4.030 28 H 0.093 0.907 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.203 0.797 32 H 0.175 0.825 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.219 0.781 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -22.600 17.006 -3.245 28.469 hybrid contribution 1.062 -0.930 0.169 1.422 sum -21.538 16.076 -3.077 27.051 Atomic orbital electron populations 1.21854 0.74538 1.04467 1.03365 1.48373 1.06344 1.02935 1.58337 1.77373 1.02059 1.07180 1.25132 1.23949 0.95136 0.95319 0.99638 1.21428 0.97002 0.94578 1.13567 1.20496 0.91983 0.89334 1.03730 1.20569 0.88417 0.84688 1.01122 1.88032 1.28917 1.14141 1.95420 1.22327 0.96460 0.82150 1.02371 1.20034 0.90323 0.82412 0.77632 1.90751 1.29935 1.70350 1.48117 1.48239 1.08270 1.04666 1.73043 1.21759 0.84628 0.95829 0.99491 1.21890 0.99047 0.97717 0.98259 1.21830 0.94222 0.98083 1.02360 1.20593 0.87290 0.90937 0.95481 0.93029 1.42389 1.07237 1.17780 1.68452 1.19322 0.87923 1.00833 1.29227 0.90945 1.24752 0.98274 0.96480 1.01209 1.69671 1.30473 1.09127 1.48750 0.86117 0.83964 0.77726 0.78444 1.20362 1.21858 1.21761 1.22920 0.85604 0.93832 1.00663 0.90701 0.89144 0.89711 0.79735 0.82480 0.91321 0.91313 0.90137 0.90248 0.90670 0.91150 0.91537 0.90940 0.91344 0.91980 0.78072 0.93514 0.91940 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.51 11.28 59.85 0.67 1.19 16 2 N -0.37 -3.78 4.01 -63.88 -0.26 -4.04 16 3 N -0.30 -3.58 12.58 30.62 0.39 -3.19 16 4 C 0.04 0.51 12.03 -17.36 -0.21 0.30 16 5 C -0.24 -2.91 10.14 -40.01 -0.41 -3.32 16 6 C 0.07 0.77 6.91 -82.26 -0.57 0.20 16 7 C 0.13 1.09 5.89 36.01 0.21 1.31 16 8 O -0.35 -4.24 9.17 -55.14 -0.51 -4.74 16 9 C 0.05 0.47 4.76 36.01 0.17 0.65 16 10 C 0.51 7.84 7.78 -10.98 -0.09 7.75 16 11 O -0.52 -10.62 15.91 -14.35 -0.23 -10.85 16 12 N -0.61 -8.73 2.97 -172.48 -0.51 -9.24 16 13 C 0.11 1.04 6.34 -3.71 -0.02 1.02 16 14 C -0.13 -1.38 6.08 -26.61 -0.16 -1.54 16 15 C -0.13 -1.87 5.35 -26.69 -0.14 -2.01 16 16 C 0.17 3.24 2.94 -67.56 -0.20 3.05 16 17 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 18 N -0.72 -17.59 5.12 -53.07 -0.27 -17.86 16 19 C -0.24 -6.72 9.93 -15.06 -0.15 -6.87 16 20 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 21 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 22 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 23 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 27 C 0.09 1.73 6.05 -3.46 -0.02 1.71 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.23 7.78 -51.93 -0.40 -0.17 16 31 H 0.19 1.50 8.06 -52.49 -0.42 1.07 16 32 H 0.16 2.08 7.85 -52.49 -0.41 1.66 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.60 7.69 -51.93 -0.40 0.20 16 36 H 0.08 0.56 7.94 -51.93 -0.41 0.15 16 37 H 0.07 0.48 5.93 -51.93 -0.31 0.18 16 38 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.39 9.91 7.80 -40.82 -0.32 9.59 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.09 2.02 7.00 -51.93 -0.36 1.66 16 LS Contribution 380.37 15.07 5.73 5.73 Total: -1.00 -36.74 380.37 -8.19 -44.94 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -7.23 Total: 5.75 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -1.00 Total: 3.01 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: 0.07 Total: -61.51 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.73 Total: -15.59 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.74 -8.19 -44.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208408207.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.470 kcal (2) G-P(sol) polarization free energy of solvation -36.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds