Wall clock time and date at job start Sat Apr 11 2020 00:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40086 * 126.03748 * 2 1 4 4 C 1.30844 * 108.20537 * 180.02562 * 3 2 1 5 5 C 1.39868 * 108.20218 * 0.02562 * 4 3 2 6 6 C 1.34949 * 126.04009 * 179.69941 * 2 1 3 7 7 C 1.50703 * 126.12243 * 359.97438 * 6 2 1 8 8 O 1.42905 * 109.47061 * 180.02562 * 7 6 2 9 9 C 1.42891 * 113.99971 * 179.97438 * 8 7 6 10 10 C 1.50708 * 109.47146 * 179.97438 * 9 8 7 11 11 O 1.21277 * 119.99429 * 359.97438 * 10 9 8 12 12 N 1.34771 * 119.99782 * 179.97438 * 10 9 8 13 13 C 1.46922 * 120.63469 * 0.02562 * 12 10 9 14 14 C 1.53194 * 108.77634 * 233.58295 * 13 12 10 15 15 C 1.53040 * 109.31623 * 305.36548 * 14 13 12 16 16 C 1.53044 * 109.53312 * 61.35948 * 15 14 13 17 17 H 1.09000 * 109.49274 * 58.62857 * 16 15 14 18 18 N 1.46502 * 109.49318 * 178.68108 * 16 15 14 19 19 C 1.36936 * 120.00384 * 205.00143 * 18 16 15 20 20 H 1.08006 * 119.99679 * 0.02562 * 19 18 16 21 21 C 1.38810 * 120.00333 * 180.02562 * 19 18 16 22 22 N 1.31616 * 119.99824 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99919 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46949 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46589 * 120.00314 * 23 21 19 26 26 H 1.48498 * 109.47063 * 240.00377 * 23 21 19 27 27 C 1.46929 * 120.62556 * 179.72011 * 12 10 9 28 28 H 1.09002 * 109.47391 * 90.01945 * 1 2 3 29 29 H 1.09001 * 109.46813 * 330.02001 * 1 2 3 30 30 H 1.09004 * 109.47041 * 210.02128 * 1 2 3 31 31 H 1.07998 * 125.89908 * 180.02562 * 4 3 2 32 32 H 1.07994 * 126.04191 * 179.97438 * 5 4 3 33 33 H 1.09005 * 109.47140 * 300.00119 * 7 6 2 34 34 H 1.08994 * 109.47706 * 60.00106 * 7 6 2 35 35 H 1.09005 * 109.47256 * 299.99587 * 9 8 7 36 36 H 1.09004 * 109.47622 * 59.99832 * 9 8 7 37 37 H 1.08994 * 109.58826 * 353.37480 * 13 12 10 38 38 H 1.09009 * 109.58632 * 113.79755 * 13 12 10 39 39 H 1.09004 * 109.49504 * 65.32079 * 14 13 12 40 40 H 1.09005 * 109.49903 * 185.37786 * 14 13 12 41 41 H 1.08997 * 109.46129 * 181.38400 * 15 14 13 42 42 H 1.09003 * 109.45620 * 301.36161 * 15 14 13 43 43 H 0.97002 * 120.00110 * 25.00863 * 18 16 15 44 44 H 0.97003 * 119.99702 * 179.97438 * 22 21 19 45 45 H 1.09003 * 109.58615 * 246.20164 * 27 12 10 46 46 H 1.08997 * 109.59022 * 6.62568 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5347 0.7321 -0.0006 5 6 3.5437 -0.6666 -0.0015 6 6 2.2590 -1.0912 0.0057 7 6 1.7973 -2.5258 0.0138 8 8 2.9340 -3.3919 0.0188 9 6 2.6051 -4.7824 0.0272 10 6 3.8722 -5.5983 0.0312 11 8 4.9506 -5.0435 0.0267 12 7 3.8067 -6.9444 0.0397 13 6 2.5077 -7.6308 0.0446 14 6 2.4746 -8.6152 1.2180 15 6 3.6805 -9.5529 1.1264 16 6 4.9717 -8.7363 1.2171 17 1 4.9874 -8.1837 2.1565 18 7 6.1252 -9.6377 1.1610 19 6 7.3182 -9.2586 1.7162 20 1 7.4086 -8.2952 2.1960 21 6 8.4112 -10.1125 1.6626 22 7 8.3012 -11.2864 1.0775 23 14 10.0388 -9.5950 2.4195 24 1 9.9010 -8.2397 3.0106 25 1 10.4204 -10.5610 3.4808 26 1 11.0884 -9.5731 1.3692 27 6 5.0333 -7.7535 0.0375 28 1 -0.3634 -0.0003 -1.0277 29 1 -0.3633 0.8902 0.5135 30 1 -0.3633 -0.8898 0.5142 31 1 4.4054 1.3710 -0.0003 32 1 4.4211 -1.2963 -0.0025 33 1 1.1972 -2.7093 0.9051 34 1 1.1966 -2.7192 -0.8748 35 1 2.0216 -5.0124 0.9187 36 1 2.0212 -5.0231 -0.8612 37 1 1.7082 -6.8990 0.1588 38 1 2.3778 -8.1739 -0.8917 39 1 2.5134 -8.0631 2.1571 40 1 1.5550 -9.1992 1.1771 41 1 3.6460 -10.2701 1.9464 42 1 3.6544 -10.0862 0.1761 43 1 6.0440 -10.5031 0.7304 44 1 9.0652 -11.8829 1.0397 45 1 5.1047 -8.3062 -0.8993 46 1 5.9006 -7.1025 0.1471 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208408207.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:43 Heat of formation + Delta-G solvation = -5.168084 kcal Electronic energy + Delta-G solvation = -26838.858336 eV Core-core repulsion = 22958.125299 eV Total energy + Delta-G solvation = -3880.733036 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -42.20175 -41.20564 -39.11380 -38.19015 -36.21368 -34.28679 -33.95042 -32.71085 -32.30877 -30.50098 -28.87426 -27.63035 -26.91216 -25.89399 -25.66835 -23.22533 -22.14664 -21.71717 -20.92760 -20.07359 -19.13191 -18.47053 -17.95690 -17.51821 -17.14341 -16.86141 -16.48531 -16.42446 -15.79020 -15.58027 -15.42643 -15.34609 -15.09741 -14.84768 -14.57567 -14.14263 -14.04916 -13.80234 -13.61140 -13.58148 -13.24154 -13.17967 -13.09711 -12.92172 -12.59759 -12.46699 -12.18138 -12.00869 -11.86484 -11.73250 -11.65165 -11.32779 -11.12103 -10.95297 -10.72817 -10.18261 -9.72874 -9.49099 -9.01165 -8.00169 -5.28861 0.80569 1.37538 1.43095 1.44556 1.54455 1.61337 1.82708 1.86173 2.51997 2.81523 3.33183 3.48248 3.66242 3.75955 3.78801 4.03602 4.10065 4.12934 4.18721 4.25943 4.28137 4.35234 4.36815 4.39470 4.41601 4.47961 4.64977 4.68524 4.71887 4.79725 4.80353 4.90607 4.93805 5.07281 5.17081 5.19168 5.40843 5.43984 5.50150 5.58167 5.67813 5.93665 6.11599 6.23436 6.50371 6.67090 7.21712 7.29827 8.02780 8.27319 9.22590 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016855 B = 0.002436 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.799536 B =11489.730778 C =12897.985042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.371 5.371 3 N -0.326 5.326 4 C 0.038 3.962 5 C -0.277 4.277 6 C 0.075 3.925 7 C 0.130 3.870 8 O -0.390 6.390 9 C 0.056 3.944 10 C 0.497 3.503 11 O -0.587 6.587 12 N -0.604 5.604 13 C 0.099 3.901 14 C -0.122 4.122 15 C -0.120 4.120 16 C 0.166 3.834 17 H 0.031 0.969 18 N -0.730 5.730 19 C -0.243 4.243 20 H 0.063 0.937 21 C -0.068 4.068 22 N -0.963 5.963 23 Si 0.966 3.034 24 H -0.274 1.274 25 H -0.287 1.287 26 H -0.292 1.292 27 C 0.108 3.892 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.117 0.883 31 H 0.202 0.798 32 H 0.135 0.865 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.113 0.887 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.377 0.623 44 H 0.253 0.747 45 H 0.059 0.941 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.068 15.793 -3.395 31.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.156 5.156 3 N -0.148 5.148 4 C -0.146 4.146 5 C -0.307 4.307 6 C -0.054 4.054 7 C 0.052 3.948 8 O -0.308 6.308 9 C -0.022 4.022 10 C 0.286 3.714 11 O -0.466 6.466 12 N -0.338 5.338 13 C -0.022 4.022 14 C -0.160 4.160 15 C -0.158 4.158 16 C 0.057 3.943 17 H 0.049 0.951 18 N -0.370 5.370 19 C -0.375 4.375 20 H 0.081 0.919 21 C -0.261 4.261 22 N -0.613 5.613 23 Si 0.796 3.204 24 H -0.199 1.199 25 H -0.213 1.213 26 H -0.219 1.219 27 C -0.018 4.018 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.135 0.865 31 H 0.219 0.781 32 H 0.153 0.847 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.106 0.894 39 H 0.084 0.916 40 H 0.132 0.868 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.210 0.790 44 H 0.062 0.938 45 H 0.077 0.923 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -27.150 17.261 -3.293 32.341 hybrid contribution 2.341 -0.973 0.175 2.541 sum -24.809 16.288 -3.117 29.842 Atomic orbital electron populations 1.22310 0.71688 1.06318 1.05016 1.48729 1.07858 1.02055 1.56979 1.77298 1.02452 1.08690 1.26367 1.24252 0.95779 0.95330 0.99282 1.21429 0.97559 0.95022 1.16652 1.20943 0.91599 0.90996 1.01831 1.20873 0.87519 0.82168 1.04196 1.87994 1.31523 1.15389 1.95923 1.22412 0.93120 0.80533 1.06162 1.21222 0.91681 0.82643 0.75821 1.90726 1.33043 1.71666 1.51176 1.48279 1.08552 1.04676 1.72321 1.22219 0.83099 0.96877 0.99962 1.21895 0.98200 0.97286 0.98663 1.21757 0.93507 0.98266 1.02278 1.20781 0.88013 0.90907 0.94639 0.95094 1.42536 1.07879 1.18321 1.68294 1.19532 0.89434 1.00185 1.28341 0.91857 1.25470 1.01333 0.96813 1.02510 1.69790 1.31100 1.10027 1.50399 0.85181 0.80183 0.77485 0.77589 1.19920 1.21346 1.21859 1.22275 0.86565 0.93103 0.99835 0.89091 0.88772 0.86498 0.78097 0.84735 0.87993 0.87920 0.86151 0.85898 0.85561 0.89447 0.91614 0.86828 0.92229 0.91497 0.78995 0.93823 0.92304 0.93895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 11.28 127.77 1.44 2.03 16 2 N -0.37 -6.76 4.01 -356.02 -1.43 -8.19 16 3 N -0.33 -7.75 12.58 -57.02 -0.72 -8.47 16 4 C 0.04 0.88 12.03 85.23 1.02 1.91 16 5 C -0.28 -7.06 10.14 21.99 0.22 -6.84 16 6 C 0.07 1.49 6.91 41.41 0.29 1.78 16 7 C 0.13 1.64 5.89 71.24 0.42 2.06 16 8 O -0.39 -8.55 9.17 -129.94 -1.19 -9.74 16 9 C 0.06 0.89 4.76 71.24 0.34 1.23 16 10 C 0.50 14.73 7.78 87.66 0.68 15.41 16 11 O -0.59 -25.28 15.91 16.02 0.25 -25.02 16 12 N -0.60 -16.42 2.97 -817.99 -2.43 -18.85 16 13 C 0.10 1.45 6.34 86.36 0.55 2.00 16 14 C -0.12 -2.04 6.08 30.67 0.19 -1.86 16 15 C -0.12 -3.36 5.35 30.62 0.16 -3.19 16 16 C 0.17 6.56 2.94 45.23 0.13 6.69 16 17 H 0.03 1.33 8.08 -2.39 -0.02 1.32 16 18 N -0.73 -37.17 5.12 -321.81 -1.65 -38.82 16 19 C -0.24 -14.03 9.93 84.03 0.83 -13.20 16 20 H 0.06 3.69 7.83 -2.91 -0.02 3.67 16 21 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 22 N -0.96 -59.18 13.06 21.65 0.28 -58.89 16 23 Si 0.97 47.99 29.55 68.60 2.03 50.02 16 24 H -0.27 -13.26 7.11 99.48 0.71 -12.55 16 25 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 26 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 27 C 0.11 4.12 6.05 86.52 0.52 4.65 16 28 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.12 0.05 7.78 -2.38 -0.02 0.03 16 31 H 0.20 3.49 8.06 -2.91 -0.02 3.47 16 32 H 0.13 3.94 7.85 -2.91 -0.02 3.91 16 33 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.12 0.97 7.69 -2.38 -0.02 0.95 16 36 H 0.12 0.91 7.94 -2.39 -0.02 0.89 16 37 H 0.13 0.65 5.93 -2.39 -0.01 0.64 16 38 H 0.09 1.08 8.14 -2.38 -0.02 1.07 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16 42 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.38 20.11 7.80 -92.71 -0.72 19.39 16 44 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 45 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.04 2.04 7.00 -2.39 -0.02 2.02 16 Total: -1.00 -89.28 380.37 2.68 -86.60 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.26 Total: 22.26 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 7.27 Total: 9.10 kcal Atomic # 7 Polarization: -127.28 SS G_CDS: -5.94 Total: -133.22 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -0.94 Total: -34.76 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.02 kcal Total: -89.28 2.68 -86.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208408207.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.428 kcal (2) G-P(sol) polarization free energy of solvation -89.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds