Wall clock time and date at job start Sat Apr 11 2020 00:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40085 * 126.03884 * 2 1 4 4 C 1.30836 * 108.20516 * 180.23138 * 3 2 1 5 5 C 1.39863 * 108.20458 * 359.78233 * 4 3 2 6 6 C 1.34949 * 126.03601 * 179.84614 * 2 1 3 7 7 C 1.50696 * 126.12834 * 0.03650 * 6 2 1 8 8 O 1.42902 * 109.47519 * 179.71315 * 7 6 2 9 9 C 1.42892 * 114.00340 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.47075 * 180.02562 * 9 8 7 11 11 O 1.21276 * 120.00029 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99773 * 180.02562 * 10 9 8 13 13 C 1.46928 * 120.63206 * 359.97438 * 12 10 9 14 14 C 1.53198 * 108.77528 * 126.39232 * 13 12 10 15 15 C 1.53038 * 109.31265 * 54.63209 * 14 13 12 16 16 C 1.53038 * 109.54199 * 298.63895 * 15 14 13 17 17 H 1.09005 * 109.49608 * 301.37795 * 16 15 14 18 18 N 1.46496 * 109.50091 * 181.31360 * 16 15 14 19 19 C 1.36939 * 120.00077 * 155.06253 * 18 16 15 20 20 H 1.07997 * 119.99728 * 359.72656 * 19 18 16 21 21 C 1.38815 * 119.99845 * 180.02562 * 19 18 16 22 22 N 1.31619 * 119.99884 * 359.72042 * 21 19 18 23 23 Si 1.86798 * 119.99660 * 179.72678 * 21 19 18 24 24 H 1.48493 * 109.47326 * 89.99909 * 23 21 19 25 25 H 1.48506 * 109.46545 * 209.99659 * 23 21 19 26 26 H 1.48498 * 109.47210 * 329.99370 * 23 21 19 27 27 C 1.46937 * 120.60502 * 179.97438 * 12 10 9 28 28 H 1.08998 * 109.47258 * 270.15430 * 1 2 3 29 29 H 1.08998 * 109.47283 * 30.15380 * 1 2 3 30 30 H 1.09005 * 109.47170 * 150.15093 * 1 2 3 31 31 H 1.08001 * 125.89554 * 179.74414 * 4 3 2 32 32 H 1.08002 * 126.04561 * 180.02562 * 5 4 3 33 33 H 1.09005 * 109.47226 * 59.71459 * 7 6 2 34 34 H 1.09004 * 109.47120 * 299.71404 * 7 6 2 35 35 H 1.09007 * 109.46978 * 60.00332 * 9 8 7 36 36 H 1.08997 * 109.47405 * 299.99764 * 9 8 7 37 37 H 1.09002 * 109.58398 * 6.60553 * 13 12 10 38 38 H 1.08995 * 109.70535 * 246.24548 * 13 12 10 39 39 H 1.08999 * 109.49305 * 294.68610 * 14 13 12 40 40 H 1.08994 * 109.52217 * 174.60501 * 14 13 12 41 41 H 1.09000 * 109.46171 * 178.61569 * 15 14 13 42 42 H 1.09002 * 109.44894 * 58.65055 * 15 14 13 43 43 H 0.97004 * 120.00009 * 335.06870 * 18 16 15 44 44 H 0.97000 * 119.99517 * 180.02562 * 22 21 19 45 45 H 1.08998 * 109.55844 * 113.80513 * 27 12 10 46 46 H 1.08999 * 109.60997 * 353.38228 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7321 -0.0050 5 6 3.5437 -0.6665 -0.0033 6 6 2.2588 -1.0913 0.0029 7 6 1.7973 -2.5258 0.0060 8 8 2.9339 -3.3920 0.0018 9 6 2.6050 -4.7825 0.0049 10 6 3.8720 -5.5984 0.0007 11 8 4.9505 -5.0437 -0.0039 12 7 3.8067 -6.9446 0.0022 13 6 2.5076 -7.6310 0.0083 14 6 2.4687 -8.6233 -1.1583 15 6 3.6752 -9.5603 -1.0663 16 6 4.9659 -8.7445 -1.1689 17 1 4.9770 -8.1981 -2.1120 18 7 6.1197 -9.6454 -1.1122 19 6 7.3102 -9.2695 -1.6747 20 1 7.3973 -8.3107 -2.1640 21 6 8.4033 -10.1235 -1.6214 22 7 8.2970 -11.2921 -1.0254 23 14 10.0252 -9.6138 -2.3955 24 1 10.8502 -8.8974 -1.3899 25 1 10.7521 -10.8218 -2.8621 26 1 9.7627 -8.7174 -3.5499 27 6 5.0336 -7.7532 -0.0024 28 1 -0.3633 0.0028 1.0276 29 1 -0.3634 0.8886 -0.5162 30 1 -0.3634 -0.8914 -0.5115 31 1 4.4053 1.3710 -0.0103 32 1 4.4210 -1.2964 -0.0060 33 1 1.1931 -2.7150 -0.8813 34 1 1.2006 -2.7136 0.8987 35 1 2.0173 -5.0188 -0.8822 36 1 2.0254 -5.0169 0.8978 37 1 1.7075 -6.8998 -0.1070 38 1 2.3798 -8.1674 0.9485 39 1 2.5030 -8.0776 -2.1012 40 1 1.5497 -9.2073 -1.1092 41 1 3.6367 -10.2830 -1.8813 42 1 3.6535 -10.0872 -0.1123 43 1 6.0403 -10.5083 -0.6762 44 1 9.0609 -11.8887 -0.9878 45 1 5.1141 -8.2993 0.9374 46 1 5.8997 -7.1029 -0.1250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208408208.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:47 Heat of formation + Delta-G solvation = 21.680087 kcal Electronic energy + Delta-G solvation = -26838.504114 eV Core-core repulsion = 22958.935302 eV Total energy + Delta-G solvation = -3879.568812 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.44105 -40.06024 -38.15919 -37.00426 -34.51998 -33.63321 -32.37956 -31.59581 -31.19035 -29.08601 -27.70588 -27.04545 -26.14560 -24.68933 -23.90306 -21.93731 -21.33141 -20.41799 -20.16005 -18.91970 -17.51584 -17.16684 -17.10532 -16.79932 -16.20283 -15.76079 -15.51955 -14.93860 -14.68893 -14.55385 -14.21907 -14.03519 -13.89745 -13.65704 -13.47217 -13.19763 -13.00249 -12.88637 -12.70896 -12.53506 -12.41336 -12.18922 -11.86151 -11.37688 -11.08673 -10.91311 -10.85014 -10.69459 -10.61596 -10.26364 -10.20978 -9.85207 -9.75414 -9.51657 -9.48288 -9.08066 -8.68981 -8.38488 -7.01050 -5.79197 -3.09091 1.57189 2.05589 2.68215 2.72610 2.78143 3.45923 3.51457 3.52834 3.60595 4.21730 4.28663 4.51811 4.57501 4.67665 4.69470 4.74199 4.81722 4.86870 4.90505 4.95680 5.00305 5.04226 5.18257 5.44543 5.46289 5.49191 5.54684 5.58574 5.75125 5.88177 5.98232 6.02711 6.12345 6.17167 6.30762 6.45536 6.49578 6.55265 6.69969 6.77949 6.81431 6.99006 7.46371 7.58592 7.72078 8.34498 8.39436 9.50949 10.04310 10.39435 11.42975 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016858 B = 0.002436 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.492046 B =11490.253261 C =12897.319654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.375 5.375 3 N -0.296 5.296 4 C 0.045 3.955 5 C -0.237 4.237 6 C 0.071 3.929 7 C 0.131 3.869 8 O -0.348 6.348 9 C 0.047 3.953 10 C 0.510 3.490 11 O -0.517 6.517 12 N -0.606 5.606 13 C 0.106 3.894 14 C -0.130 4.130 15 C -0.126 4.126 16 C 0.168 3.832 17 H 0.051 0.949 18 N -0.718 5.718 19 C -0.243 4.243 20 H 0.072 0.928 21 C -0.011 4.011 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.094 3.906 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.186 0.814 32 H 0.158 0.842 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.385 0.615 44 H 0.256 0.744 45 H 0.062 0.938 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.587 15.547 3.299 27.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.160 5.160 3 N -0.117 5.117 4 C -0.140 4.140 5 C -0.266 4.266 6 C -0.055 4.055 7 C 0.052 3.948 8 O -0.265 6.265 9 C -0.033 4.033 10 C 0.296 3.704 11 O -0.391 6.391 12 N -0.342 5.342 13 C -0.017 4.017 14 C -0.169 4.169 15 C -0.165 4.165 16 C 0.057 3.943 17 H 0.069 0.931 18 N -0.358 5.358 19 C -0.374 4.374 20 H 0.090 0.910 21 C -0.207 4.207 22 N -0.580 5.580 23 Si 0.738 3.262 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.030 4.030 28 H 0.093 0.907 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.203 0.797 32 H 0.175 0.825 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.219 0.781 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -22.566 16.974 3.190 28.417 hybrid contribution 1.059 -0.916 -0.172 1.411 sum -21.507 16.058 3.019 27.010 Atomic orbital electron populations 1.21852 0.74540 1.04472 1.03361 1.48371 1.06344 1.02935 1.58336 1.77370 1.02060 1.07182 1.25132 1.23946 0.95137 0.95319 0.99637 1.21430 0.97003 0.94578 1.13569 1.20496 0.91984 0.89334 1.03730 1.20568 0.88418 0.84686 1.01122 1.88031 1.28922 1.14137 1.95422 1.22326 0.96459 0.82147 1.02374 1.20033 0.90324 0.82407 0.77629 1.90751 1.29931 1.70355 1.48110 1.48238 1.08252 1.04662 1.73051 1.21752 0.84621 0.95808 0.99525 1.21888 0.99048 0.97670 0.98313 1.21826 0.94211 0.98093 1.02356 1.20504 0.87324 0.90908 0.95588 0.93094 1.42377 1.07372 1.18088 1.68007 1.19274 0.88096 1.01128 1.28900 0.91005 1.24751 0.98283 0.96490 1.01157 1.69662 1.30571 1.09390 1.48402 0.86182 0.83879 0.77172 0.78948 1.21550 1.21778 1.20651 1.22830 0.85605 0.93852 1.00711 0.90723 0.89133 0.89701 0.79735 0.82478 0.91324 0.91310 0.90133 0.90246 0.90686 0.91142 0.91539 0.90934 0.91343 0.91977 0.78061 0.93464 0.91951 0.89009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.51 11.27 59.84 0.67 1.19 16 2 N -0.37 -3.78 4.01 -63.89 -0.26 -4.04 16 3 N -0.30 -3.58 12.58 30.62 0.39 -3.19 16 4 C 0.04 0.51 12.02 -17.37 -0.21 0.30 16 5 C -0.24 -2.91 10.14 -40.01 -0.41 -3.32 16 6 C 0.07 0.77 6.91 -82.26 -0.57 0.20 16 7 C 0.13 1.09 5.90 36.00 0.21 1.31 16 8 O -0.35 -4.24 9.17 -55.14 -0.51 -4.74 16 9 C 0.05 0.48 4.76 36.01 0.17 0.65 16 10 C 0.51 7.84 7.77 -10.98 -0.09 7.75 16 11 O -0.52 -10.61 15.91 -14.35 -0.23 -10.84 16 12 N -0.61 -8.73 2.97 -172.74 -0.51 -9.25 16 13 C 0.11 1.04 6.34 -3.71 -0.02 1.02 16 14 C -0.13 -1.38 6.08 -26.61 -0.16 -1.54 16 15 C -0.13 -1.87 5.35 -26.69 -0.14 -2.01 16 16 C 0.17 3.24 2.92 -67.80 -0.20 3.04 16 17 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 18 N -0.72 -17.60 5.12 -53.29 -0.27 -17.87 16 19 C -0.24 -6.75 9.93 -15.06 -0.15 -6.90 16 20 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 21 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 22 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 23 Si 0.91 22.72 29.55 -169.99 -5.02 17.69 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 27 C 0.09 1.74 6.02 -3.69 -0.02 1.72 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.23 7.79 -51.93 -0.40 -0.17 16 31 H 0.19 1.50 8.06 -52.49 -0.42 1.07 16 32 H 0.16 2.08 7.85 -52.49 -0.41 1.66 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.60 7.69 -51.92 -0.40 0.20 16 36 H 0.08 0.56 7.94 -51.93 -0.41 0.15 16 37 H 0.07 0.48 5.93 -51.93 -0.31 0.18 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.39 9.91 7.80 -40.82 -0.32 9.60 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.09 2.02 7.01 -51.93 -0.36 1.66 16 LS Contribution 380.34 15.07 5.73 5.73 Total: -1.00 -36.71 380.34 -8.20 -44.91 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -7.23 Total: 5.78 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -1.00 Total: 3.00 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: 0.07 Total: -61.53 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.73 Total: -15.59 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.71 -8.20 -44.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208408208.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.591 kcal (2) G-P(sol) polarization free energy of solvation -36.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds