Wall clock time and date at job start Sat Apr 11 2020 00:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40085 * 126.03884 * 2 1 4 4 C 1.30836 * 108.20516 * 180.23138 * 3 2 1 5 5 C 1.39863 * 108.20458 * 359.78233 * 4 3 2 6 6 C 1.34949 * 126.03601 * 179.84614 * 2 1 3 7 7 C 1.50696 * 126.12834 * 0.03650 * 6 2 1 8 8 O 1.42902 * 109.47519 * 179.71315 * 7 6 2 9 9 C 1.42892 * 114.00340 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.47075 * 180.02562 * 9 8 7 11 11 O 1.21276 * 120.00029 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99773 * 180.02562 * 10 9 8 13 13 C 1.46928 * 120.63206 * 359.97438 * 12 10 9 14 14 C 1.53198 * 108.77528 * 126.39232 * 13 12 10 15 15 C 1.53038 * 109.31265 * 54.63209 * 14 13 12 16 16 C 1.53038 * 109.54199 * 298.63895 * 15 14 13 17 17 H 1.09005 * 109.49608 * 301.37795 * 16 15 14 18 18 N 1.46496 * 109.50091 * 181.31360 * 16 15 14 19 19 C 1.36939 * 120.00077 * 155.06253 * 18 16 15 20 20 H 1.07997 * 119.99728 * 359.72656 * 19 18 16 21 21 C 1.38815 * 119.99845 * 180.02562 * 19 18 16 22 22 N 1.31619 * 119.99884 * 359.72042 * 21 19 18 23 23 Si 1.86798 * 119.99660 * 179.72678 * 21 19 18 24 24 H 1.48493 * 109.47326 * 89.99909 * 23 21 19 25 25 H 1.48506 * 109.46545 * 209.99659 * 23 21 19 26 26 H 1.48498 * 109.47210 * 329.99370 * 23 21 19 27 27 C 1.46937 * 120.60502 * 179.97438 * 12 10 9 28 28 H 1.08998 * 109.47258 * 270.15430 * 1 2 3 29 29 H 1.08998 * 109.47283 * 30.15380 * 1 2 3 30 30 H 1.09005 * 109.47170 * 150.15093 * 1 2 3 31 31 H 1.08001 * 125.89554 * 179.74414 * 4 3 2 32 32 H 1.08002 * 126.04561 * 180.02562 * 5 4 3 33 33 H 1.09005 * 109.47226 * 59.71459 * 7 6 2 34 34 H 1.09004 * 109.47120 * 299.71404 * 7 6 2 35 35 H 1.09007 * 109.46978 * 60.00332 * 9 8 7 36 36 H 1.08997 * 109.47405 * 299.99764 * 9 8 7 37 37 H 1.09002 * 109.58398 * 6.60553 * 13 12 10 38 38 H 1.08995 * 109.70535 * 246.24548 * 13 12 10 39 39 H 1.08999 * 109.49305 * 294.68610 * 14 13 12 40 40 H 1.08994 * 109.52217 * 174.60501 * 14 13 12 41 41 H 1.09000 * 109.46171 * 178.61569 * 15 14 13 42 42 H 1.09002 * 109.44894 * 58.65055 * 15 14 13 43 43 H 0.97004 * 120.00009 * 335.06870 * 18 16 15 44 44 H 0.97000 * 119.99517 * 180.02562 * 22 21 19 45 45 H 1.08998 * 109.55844 * 113.80513 * 27 12 10 46 46 H 1.08999 * 109.60997 * 353.38228 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7321 -0.0050 5 6 3.5437 -0.6665 -0.0033 6 6 2.2588 -1.0913 0.0029 7 6 1.7973 -2.5258 0.0060 8 8 2.9339 -3.3920 0.0018 9 6 2.6050 -4.7825 0.0049 10 6 3.8720 -5.5984 0.0007 11 8 4.9505 -5.0437 -0.0039 12 7 3.8067 -6.9446 0.0022 13 6 2.5076 -7.6310 0.0083 14 6 2.4687 -8.6233 -1.1583 15 6 3.6752 -9.5603 -1.0663 16 6 4.9659 -8.7445 -1.1689 17 1 4.9770 -8.1981 -2.1120 18 7 6.1197 -9.6454 -1.1122 19 6 7.3102 -9.2695 -1.6747 20 1 7.3973 -8.3107 -2.1640 21 6 8.4033 -10.1235 -1.6214 22 7 8.2970 -11.2921 -1.0254 23 14 10.0252 -9.6138 -2.3955 24 1 10.8502 -8.8974 -1.3899 25 1 10.7521 -10.8218 -2.8621 26 1 9.7627 -8.7174 -3.5499 27 6 5.0336 -7.7532 -0.0024 28 1 -0.3633 0.0028 1.0276 29 1 -0.3634 0.8886 -0.5162 30 1 -0.3634 -0.8914 -0.5115 31 1 4.4053 1.3710 -0.0103 32 1 4.4210 -1.2964 -0.0060 33 1 1.1931 -2.7150 -0.8813 34 1 1.2006 -2.7136 0.8987 35 1 2.0173 -5.0188 -0.8822 36 1 2.0254 -5.0169 0.8978 37 1 1.7075 -6.8998 -0.1070 38 1 2.3798 -8.1674 0.9485 39 1 2.5030 -8.0776 -2.1012 40 1 1.5497 -9.2073 -1.1092 41 1 3.6367 -10.2830 -1.8813 42 1 3.6535 -10.0872 -0.1123 43 1 6.0403 -10.5083 -0.6762 44 1 9.0609 -11.8887 -0.9878 45 1 5.1141 -8.2993 0.9374 46 1 5.8997 -7.1029 -0.1250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208408208.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:46 Heat of formation + Delta-G solvation = -5.005284 kcal Electronic energy + Delta-G solvation = -26839.661279 eV Core-core repulsion = 22958.935302 eV Total energy + Delta-G solvation = -3880.725977 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.20226 -41.21107 -39.12175 -38.19444 -36.21421 -34.28745 -33.95249 -32.71716 -32.30890 -30.50789 -28.87639 -27.63031 -26.91197 -25.89596 -25.67366 -23.22416 -22.14734 -21.71830 -20.92729 -20.07221 -19.13073 -18.47214 -17.95695 -17.51887 -17.14533 -16.86248 -16.48752 -16.42472 -15.78693 -15.58686 -15.42407 -15.34579 -15.10330 -14.84879 -14.57563 -14.14408 -14.05033 -13.80237 -13.61572 -13.58163 -13.24244 -13.17871 -13.09017 -12.91375 -12.59317 -12.46298 -12.21540 -12.00271 -11.86722 -11.73208 -11.64973 -11.32643 -11.11315 -10.95310 -10.72882 -10.18282 -9.72889 -9.49046 -9.01495 -7.99933 -5.28721 0.80580 1.37519 1.43285 1.45443 1.53254 1.61237 1.82749 1.86059 2.52157 2.81441 3.33301 3.48214 3.66278 3.75946 3.78598 4.03278 4.09950 4.12958 4.18717 4.25901 4.28562 4.35296 4.37149 4.39498 4.41552 4.48022 4.64994 4.68573 4.71877 4.79612 4.80392 4.90734 4.93757 5.07255 5.17071 5.19132 5.40795 5.44081 5.50118 5.58073 5.67839 5.93653 6.11599 6.23481 6.50259 6.67129 7.21600 7.29875 8.02841 8.27414 9.22605 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016858 B = 0.002436 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.492046 B =11490.253261 C =12897.319654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.371 5.371 3 N -0.326 5.326 4 C 0.038 3.962 5 C -0.277 4.277 6 C 0.075 3.925 7 C 0.130 3.870 8 O -0.390 6.390 9 C 0.057 3.943 10 C 0.498 3.502 11 O -0.586 6.586 12 N -0.604 5.604 13 C 0.099 3.901 14 C -0.122 4.122 15 C -0.120 4.120 16 C 0.166 3.834 17 H 0.030 0.970 18 N -0.730 5.730 19 C -0.245 4.245 20 H 0.063 0.937 21 C -0.068 4.068 22 N -0.963 5.963 23 Si 0.967 3.033 24 H -0.290 1.290 25 H -0.288 1.288 26 H -0.274 1.274 27 C 0.108 3.892 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.117 0.883 31 H 0.202 0.798 32 H 0.135 0.865 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.114 0.886 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.378 0.622 44 H 0.253 0.747 45 H 0.058 0.942 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.038 15.783 3.349 31.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.156 5.156 3 N -0.148 5.148 4 C -0.146 4.146 5 C -0.307 4.307 6 C -0.054 4.054 7 C 0.052 3.948 8 O -0.308 6.308 9 C -0.022 4.022 10 C 0.286 3.714 11 O -0.466 6.466 12 N -0.338 5.338 13 C -0.022 4.022 14 C -0.160 4.160 15 C -0.158 4.158 16 C 0.057 3.943 17 H 0.048 0.952 18 N -0.370 5.370 19 C -0.376 4.376 20 H 0.081 0.919 21 C -0.261 4.261 22 N -0.613 5.613 23 Si 0.796 3.204 24 H -0.217 1.217 25 H -0.214 1.214 26 H -0.199 1.199 27 C -0.017 4.017 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.135 0.865 31 H 0.219 0.781 32 H 0.153 0.847 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.106 0.894 39 H 0.084 0.916 40 H 0.132 0.868 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.210 0.790 44 H 0.062 0.938 45 H 0.076 0.924 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -27.121 17.239 3.235 32.298 hybrid contribution 2.339 -0.960 -0.175 2.534 sum -24.782 16.279 3.060 29.808 Atomic orbital electron populations 1.22308 0.71692 1.06327 1.05008 1.48727 1.07858 1.02054 1.56978 1.77296 1.02454 1.08692 1.26368 1.24249 0.95780 0.95331 0.99280 1.21431 0.97560 0.95021 1.16653 1.20943 0.91600 0.90995 1.01832 1.20872 0.87520 0.82167 1.04197 1.87993 1.31527 1.15383 1.95925 1.22411 0.93114 0.80531 1.06166 1.21222 0.91683 0.82636 0.75815 1.90725 1.33037 1.71670 1.51164 1.48277 1.08528 1.04674 1.72333 1.22212 0.83094 0.96847 1.00015 1.21894 0.98193 0.97243 0.98716 1.21754 0.93499 0.98273 1.02275 1.20690 0.88044 0.90889 0.94726 0.95154 1.42525 1.08022 1.18635 1.67839 1.19499 0.89596 1.00507 1.28041 0.91851 1.25472 1.01333 0.96817 1.02469 1.69784 1.31170 1.10289 1.50043 0.85248 0.80170 0.76841 0.78184 1.21683 1.21431 1.19915 1.22183 0.86581 0.93118 0.99863 0.89110 0.88761 0.86491 0.78097 0.84732 0.87989 0.87924 0.86142 0.85902 0.85570 0.89435 0.91613 0.86820 0.92221 0.91499 0.78988 0.93817 0.92372 0.93886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 11.27 127.77 1.44 2.03 16 2 N -0.37 -6.76 4.01 -356.04 -1.43 -8.19 16 3 N -0.33 -7.75 12.58 -57.03 -0.72 -8.47 16 4 C 0.04 0.88 12.02 85.23 1.02 1.91 16 5 C -0.28 -7.06 10.14 21.99 0.22 -6.84 16 6 C 0.07 1.49 6.91 41.40 0.29 1.78 16 7 C 0.13 1.64 5.90 71.23 0.42 2.06 16 8 O -0.39 -8.55 9.17 -129.94 -1.19 -9.74 16 9 C 0.06 0.89 4.76 71.24 0.34 1.23 16 10 C 0.50 14.74 7.77 87.66 0.68 15.42 16 11 O -0.59 -25.27 15.91 16.02 0.25 -25.01 16 12 N -0.60 -16.44 2.97 -818.80 -2.43 -18.87 16 13 C 0.10 1.45 6.34 86.36 0.55 2.00 16 14 C -0.12 -2.05 6.08 30.67 0.19 -1.86 16 15 C -0.12 -3.36 5.35 30.62 0.16 -3.20 16 16 C 0.17 6.56 2.92 45.08 0.13 6.69 16 17 H 0.03 1.31 8.08 -2.38 -0.02 1.29 16 18 N -0.73 -37.19 5.12 -322.52 -1.65 -38.85 16 19 C -0.24 -14.13 9.93 84.03 0.83 -13.29 16 20 H 0.06 3.69 7.83 -2.91 -0.02 3.66 16 21 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 22 N -0.96 -59.17 13.06 21.65 0.28 -58.88 16 23 Si 0.97 47.97 29.55 68.60 2.03 50.00 16 24 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 25 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 26 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 27 C 0.11 4.14 6.02 86.37 0.52 4.66 16 28 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.12 0.05 7.79 -2.38 -0.02 0.03 16 31 H 0.20 3.49 8.06 -2.91 -0.02 3.47 16 32 H 0.13 3.94 7.85 -2.91 -0.02 3.91 16 33 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 35 H 0.12 0.97 7.69 -2.38 -0.02 0.95 16 36 H 0.12 0.91 7.94 -2.39 -0.02 0.89 16 37 H 0.13 0.66 5.93 -2.39 -0.01 0.64 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.38 20.12 7.80 -92.71 -0.72 19.40 16 44 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 45 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.04 2.04 7.01 -2.39 -0.02 2.03 16 Total: -1.00 -89.23 380.34 2.67 -86.56 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.26 Total: 22.39 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 7.27 Total: 9.05 kcal Atomic # 7 Polarization: -127.31 SS G_CDS: -5.95 Total: -133.26 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -0.94 Total: -34.75 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Total: -89.23 2.67 -86.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208408208.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.557 kcal (2) G-P(sol) polarization free energy of solvation -89.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds