Wall clock time and date at job start Sat Apr 11 2020 00:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86805 * 119.99894 * 2 1 4 4 H 1.48498 * 109.47136 * 240.00438 * 3 2 1 5 5 H 1.48500 * 109.46928 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47052 * 120.00094 * 3 2 1 7 7 C 1.39919 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99619 * 184.72190 * 7 2 1 9 9 C 1.41289 * 120.00090 * 4.43873 * 7 2 1 10 10 C 1.40649 * 120.22821 * 324.96419 * 9 7 2 11 11 C 1.38143 * 119.70601 * 179.81223 * 10 9 7 12 12 N 1.40012 * 119.90702 * 180.20902 * 11 10 9 13 13 C 1.34776 * 119.99858 * 35.44521 * 12 11 10 14 14 O 1.21284 * 120.00139 * 355.68610 * 13 12 11 15 15 C 1.50700 * 119.99441 * 175.68417 * 13 12 11 16 16 C 1.53004 * 109.46749 * 180.02562 * 15 13 12 17 17 C 1.53006 * 109.47093 * 180.02562 * 16 15 13 18 18 C 1.52994 * 109.47021 * 180.02562 * 17 16 15 19 19 C 1.52997 * 109.47211 * 179.97438 * 18 17 16 20 20 C 1.53002 * 109.47651 * 179.97438 * 19 18 17 21 21 C 1.52992 * 109.47328 * 179.97438 * 20 19 18 22 22 N 1.46907 * 109.47172 * 179.97438 * 21 20 19 23 23 C 1.39370 * 120.17973 * 0.44627 * 11 10 9 24 24 C 1.38366 * 120.47173 * 359.78121 * 23 11 10 25 25 C 1.38010 * 120.28327 * 0.02562 * 24 23 11 26 26 F 1.35095 * 120.08960 * 179.97438 * 25 24 23 27 27 H 0.97003 * 120.00218 * 0.02562 * 1 2 3 28 28 H 1.07994 * 120.14473 * 359.97438 * 10 9 7 29 29 H 0.96998 * 119.99417 * 215.44590 * 12 11 10 30 30 H 1.08999 * 109.47411 * 299.99941 * 15 13 12 31 31 H 1.09000 * 109.47438 * 60.00238 * 15 13 12 32 32 H 1.08999 * 109.47078 * 300.00099 * 16 15 13 33 33 H 1.09003 * 109.47499 * 60.00008 * 16 15 13 34 34 H 1.08999 * 109.47174 * 299.99960 * 17 16 15 35 35 H 1.08997 * 109.46627 * 59.99869 * 17 16 15 36 36 H 1.08999 * 109.47108 * 299.99992 * 18 17 16 37 37 H 1.09003 * 109.47542 * 59.99945 * 18 17 16 38 38 H 1.08999 * 109.47081 * 300.00012 * 19 18 17 39 39 H 1.09000 * 109.47234 * 59.99982 * 19 18 17 40 40 H 1.09007 * 109.46735 * 299.99864 * 20 19 18 41 41 H 1.09000 * 109.46807 * 59.99732 * 20 19 18 42 42 H 1.08999 * 109.47249 * 299.99929 * 21 20 19 43 43 H 1.09000 * 109.47388 * 60.00097 * 21 20 19 44 44 H 1.00902 * 110.99675 * 56.04291 * 22 21 20 45 45 H 1.00895 * 111.00052 * 179.97438 * 22 21 20 46 46 H 1.08005 * 119.76241 * 179.76432 * 23 11 10 47 47 H 1.07991 * 119.85309 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0962 1.6965 -1.2125 5 1 1.2775 2.7465 0.0006 6 1 3.0963 1.6965 1.2124 7 6 2.0082 -1.2117 -0.0005 8 1 3.0854 -1.2132 0.0765 9 6 1.3050 -2.4335 -0.0958 10 6 0.0453 -2.5748 0.5138 11 6 -0.6345 -3.7729 0.4105 12 7 -1.8907 -3.9169 1.0120 13 6 -2.7430 -2.8735 1.0502 14 8 -2.3933 -1.7892 0.6344 15 6 -4.1306 -3.0544 1.6096 16 6 -4.8869 -1.7264 1.5365 17 6 -6.2956 -1.9097 2.1051 18 6 -7.0521 -0.5820 2.0314 19 6 -8.4608 -0.7654 2.5993 20 6 -9.2173 0.5625 2.5262 21 6 -10.6262 0.3788 3.0936 22 7 -11.3522 1.6540 3.0239 23 6 -0.0713 -4.8404 -0.2864 24 6 1.1695 -4.7110 -0.8849 25 6 1.8639 -3.5215 -0.7972 26 9 3.0753 -3.3996 -1.3826 27 1 -0.4850 0.8401 -0.0004 28 1 -0.3896 -1.7495 1.0578 29 1 -2.1474 -4.7675 1.4011 30 1 -4.6619 -3.8072 1.0274 31 1 -4.0643 -3.3784 2.6483 32 1 -4.3558 -0.9732 2.1185 33 1 -4.9533 -1.4027 0.4978 34 1 -6.8269 -2.6630 1.5235 35 1 -6.2287 -2.2332 3.1438 36 1 -6.5209 0.1716 2.6127 37 1 -7.1188 -0.2589 0.9924 38 1 -8.9918 -1.5189 2.0176 39 1 -8.3945 -1.0886 3.6382 40 1 -8.6861 1.3157 3.1083 41 1 -9.2836 0.8861 1.4875 42 1 -11.1571 -0.3742 2.5112 43 1 -10.5603 0.0550 4.1323 44 1 -11.3710 2.0083 2.0793 45 1 -12.2866 1.5587 3.3927 46 1 -0.6070 -5.7753 -0.3597 47 1 1.5968 -5.5447 -1.4221 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219518560.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:58 Heat of formation + Delta-G solvation = -97.979920 kcal Electronic energy + Delta-G solvation = -26018.163839 eV Core-core repulsion = 22113.486218 eV Total energy + Delta-G solvation = -3904.677621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -47.15660 -39.53625 -37.33107 -36.89507 -35.25746 -34.17341 -33.06657 -32.71427 -29.71791 -29.63693 -27.82840 -25.66533 -25.25837 -22.81098 -21.65767 -21.30460 -21.03056 -20.46658 -19.39002 -17.66933 -16.53020 -16.38821 -16.02906 -15.96593 -15.75588 -15.45818 -15.05220 -14.80917 -14.38291 -14.11417 -13.94609 -13.80204 -13.29938 -13.08017 -12.97395 -12.65340 -12.47141 -12.24569 -12.03923 -11.75319 -11.70468 -11.47027 -11.42416 -11.27449 -11.09105 -10.98902 -10.90400 -10.77209 -10.64388 -10.55719 -10.50262 -10.27123 -9.65384 -9.17728 -9.13865 -9.01062 -8.76214 -7.40432 -6.85835 -6.45739 -4.36167 2.55891 2.83444 3.13888 3.15485 3.19520 3.41480 3.78099 4.02950 4.09109 4.54830 4.66766 4.69609 4.84853 4.91288 5.00887 5.08193 5.16556 5.29939 5.35591 5.43177 5.49355 5.54002 5.63285 5.68154 5.75736 5.84762 5.90882 5.91848 5.96323 6.05099 6.13697 6.18216 6.33814 6.40998 6.48134 6.68564 6.83242 6.97275 6.97852 7.03159 7.29008 7.47789 7.60188 7.77112 8.07651 8.19366 8.37146 8.56890 8.89035 8.90486 8.98376 10.34252 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014235 B = 0.002307 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.473597 B =12132.191699 C =13939.203439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.067 3.933 3 Si 0.914 3.086 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.458 4.458 8 H 0.078 0.922 9 C 0.090 3.910 10 C -0.131 4.131 11 C 0.130 3.870 12 N -0.675 5.675 13 C 0.487 3.513 14 O -0.480 6.480 15 C -0.137 4.137 16 C -0.104 4.104 17 C -0.118 4.118 18 C -0.120 4.120 19 C -0.118 4.118 20 C -0.120 4.120 21 C 0.059 3.941 22 N -0.854 5.854 23 C -0.236 4.236 24 C -0.116 4.116 25 C -0.034 4.034 26 F -0.164 7.164 27 H 0.281 0.719 28 H 0.158 0.842 29 H 0.395 0.605 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.025 0.975 43 H 0.070 0.930 44 H 0.340 0.660 45 H 0.340 0.660 46 H 0.098 0.902 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.930 -2.886 6.138 20.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.152 4.152 3 Si 0.739 3.261 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.086 3.914 10 C -0.152 4.152 11 C 0.038 3.962 12 N -0.320 5.320 13 C 0.272 3.728 14 O -0.352 6.352 15 C -0.177 4.177 16 C -0.142 4.142 17 C -0.156 4.156 18 C -0.158 4.158 19 C -0.156 4.156 20 C -0.158 4.158 21 C -0.071 4.071 22 N -0.384 5.384 23 C -0.258 4.258 24 C -0.136 4.136 25 C -0.054 4.054 26 F -0.143 7.143 27 H 0.093 0.907 28 H 0.176 0.824 29 H 0.228 0.772 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.043 0.957 43 H 0.089 0.911 44 H 0.152 0.848 45 H 0.152 0.848 46 H 0.116 0.884 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -18.339 -1.606 6.309 19.460 hybrid contribution -0.281 -0.419 -0.703 0.865 sum -18.620 -2.026 5.606 19.551 Atomic orbital electron populations 1.69852 1.06516 1.29107 1.33835 1.25948 0.95117 1.01060 0.93108 0.86273 0.79825 0.80237 0.79800 1.19057 1.20337 1.19054 1.19354 0.94842 0.89817 1.44718 0.90344 1.17574 0.92640 0.91383 0.89789 1.21689 0.95019 0.96420 1.02104 1.17709 0.84626 0.96176 0.97691 1.43443 1.15375 1.14322 1.58897 1.20792 0.86763 0.84983 0.80251 1.90943 1.76486 1.24052 1.43670 1.21660 0.93581 1.00272 1.02182 1.21338 0.94063 0.96198 1.02634 1.21606 0.95612 0.97349 1.00990 1.21582 0.94831 0.97899 1.01447 1.21558 0.95842 0.96896 1.01280 1.21607 0.94808 0.98246 1.01170 1.21843 0.94525 0.89902 1.00875 1.58729 1.22082 1.29577 1.27984 1.19908 0.98252 0.98394 1.09216 1.20244 0.95563 0.95735 1.02017 1.18034 0.84492 0.97381 1.05493 1.91263 1.43087 1.96819 1.83141 0.90725 0.82448 0.77153 0.89605 0.89568 0.91027 0.91149 0.92227 0.92122 0.91734 0.91908 0.92228 0.91965 0.91068 0.92184 0.95704 0.91106 0.84754 0.84780 0.88416 0.87920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.92 10.55 55.55 0.59 -20.34 16 2 C 0.07 1.76 5.42 -17.34 -0.09 1.67 16 3 Si 0.91 19.84 29.56 -169.99 -5.03 14.82 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.46 -12.78 8.69 -37.79 -0.33 -13.11 16 8 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16 9 C 0.09 2.51 5.55 -106.78 -0.59 1.91 16 10 C -0.13 -3.47 7.30 -38.71 -0.28 -3.75 16 11 C 0.13 2.96 6.29 -83.73 -0.53 2.43 16 12 N -0.68 -12.06 5.34 -9.90 -0.05 -12.12 16 13 C 0.49 8.81 7.67 -10.99 -0.08 8.72 16 14 O -0.48 -11.13 13.37 5.55 0.07 -11.06 16 15 C -0.14 -1.67 5.70 -27.88 -0.16 -1.83 16 16 C -0.10 -1.30 4.50 -26.73 -0.12 -1.42 16 17 C -0.12 -1.10 5.21 -26.73 -0.14 -1.24 16 18 C -0.12 -1.09 5.21 -26.74 -0.14 -1.22 16 19 C -0.12 -0.89 5.21 -26.73 -0.14 -1.03 16 20 C -0.12 -0.92 5.47 -26.73 -0.15 -1.06 16 21 C 0.06 0.41 6.79 -3.82 -0.03 0.38 16 22 N -0.85 -5.69 9.62 -10.37 -0.10 -5.79 16 23 C -0.24 -5.06 9.97 -39.11 -0.39 -5.45 16 24 C -0.12 -2.65 10.00 -39.62 -0.40 -3.05 16 25 C -0.03 -0.88 7.31 -38.62 -0.28 -1.16 16 26 F -0.16 -4.26 16.82 2.25 0.04 -4.22 16 27 H 0.28 7.18 8.30 -40.82 -0.34 6.84 16 28 H 0.16 4.44 4.35 -52.49 -0.23 4.21 16 29 H 0.40 5.32 8.82 -40.82 -0.36 4.96 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 33 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.34 1.93 8.99 -39.29 -0.35 1.58 16 45 H 0.34 1.69 9.08 -39.29 -0.36 1.34 16 46 H 0.10 1.76 8.06 -52.48 -0.42 1.34 16 47 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 390.27 15.07 5.88 5.88 Total: -1.00 -31.75 390.27 -10.05 -41.80 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -7.60 Total: 10.23 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -3.85 Total: -19.20 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.43 Total: -38.25 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.07 Total: -11.06 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.04 Total: -4.22 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.03 Total: 14.82 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.75 -10.05 -41.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219518560.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.184 kcal (2) G-P(sol) polarization free energy of solvation -31.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds