Wall clock time and date at job start Sat Apr 11 2020 00:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86805 * 119.99894 * 2 1 4 4 H 1.48498 * 109.47136 * 240.00438 * 3 2 1 5 5 H 1.48500 * 109.46928 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47052 * 120.00094 * 3 2 1 7 7 C 1.39919 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99619 * 184.72190 * 7 2 1 9 9 C 1.41289 * 120.00090 * 4.43873 * 7 2 1 10 10 C 1.40649 * 120.22821 * 324.96419 * 9 7 2 11 11 C 1.38143 * 119.70601 * 179.81223 * 10 9 7 12 12 N 1.40012 * 119.90702 * 180.20902 * 11 10 9 13 13 C 1.34776 * 119.99858 * 35.44521 * 12 11 10 14 14 O 1.21284 * 120.00139 * 355.68610 * 13 12 11 15 15 C 1.50700 * 119.99441 * 175.68417 * 13 12 11 16 16 C 1.53004 * 109.46749 * 180.02562 * 15 13 12 17 17 C 1.53006 * 109.47093 * 180.02562 * 16 15 13 18 18 C 1.52994 * 109.47021 * 180.02562 * 17 16 15 19 19 C 1.52997 * 109.47211 * 179.97438 * 18 17 16 20 20 C 1.53002 * 109.47651 * 179.97438 * 19 18 17 21 21 C 1.52992 * 109.47328 * 179.97438 * 20 19 18 22 22 N 1.46907 * 109.47172 * 179.97438 * 21 20 19 23 23 C 1.39370 * 120.17973 * 0.44627 * 11 10 9 24 24 C 1.38366 * 120.47173 * 359.78121 * 23 11 10 25 25 C 1.38010 * 120.28327 * 0.02562 * 24 23 11 26 26 F 1.35095 * 120.08960 * 179.97438 * 25 24 23 27 27 H 0.97003 * 120.00218 * 0.02562 * 1 2 3 28 28 H 1.07994 * 120.14473 * 359.97438 * 10 9 7 29 29 H 0.96998 * 119.99417 * 215.44590 * 12 11 10 30 30 H 1.08999 * 109.47411 * 299.99941 * 15 13 12 31 31 H 1.09000 * 109.47438 * 60.00238 * 15 13 12 32 32 H 1.08999 * 109.47078 * 300.00099 * 16 15 13 33 33 H 1.09003 * 109.47499 * 60.00008 * 16 15 13 34 34 H 1.08999 * 109.47174 * 299.99960 * 17 16 15 35 35 H 1.08997 * 109.46627 * 59.99869 * 17 16 15 36 36 H 1.08999 * 109.47108 * 299.99992 * 18 17 16 37 37 H 1.09003 * 109.47542 * 59.99945 * 18 17 16 38 38 H 1.08999 * 109.47081 * 300.00012 * 19 18 17 39 39 H 1.09000 * 109.47234 * 59.99982 * 19 18 17 40 40 H 1.09007 * 109.46735 * 299.99864 * 20 19 18 41 41 H 1.09000 * 109.46807 * 59.99732 * 20 19 18 42 42 H 1.08999 * 109.47249 * 299.99929 * 21 20 19 43 43 H 1.09000 * 109.47388 * 60.00097 * 21 20 19 44 44 H 1.00902 * 110.99675 * 56.04291 * 22 21 20 45 45 H 1.00895 * 111.00052 * 179.97438 * 22 21 20 46 46 H 1.08005 * 119.76241 * 179.76432 * 23 11 10 47 47 H 1.07991 * 119.85309 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0962 1.6965 -1.2125 5 1 1.2775 2.7465 0.0006 6 1 3.0963 1.6965 1.2124 7 6 2.0082 -1.2117 -0.0005 8 1 3.0854 -1.2132 0.0765 9 6 1.3050 -2.4335 -0.0958 10 6 0.0453 -2.5748 0.5138 11 6 -0.6345 -3.7729 0.4105 12 7 -1.8907 -3.9169 1.0120 13 6 -2.7430 -2.8735 1.0502 14 8 -2.3933 -1.7892 0.6344 15 6 -4.1306 -3.0544 1.6096 16 6 -4.8869 -1.7264 1.5365 17 6 -6.2956 -1.9097 2.1051 18 6 -7.0521 -0.5820 2.0314 19 6 -8.4608 -0.7654 2.5993 20 6 -9.2173 0.5625 2.5262 21 6 -10.6262 0.3788 3.0936 22 7 -11.3522 1.6540 3.0239 23 6 -0.0713 -4.8404 -0.2864 24 6 1.1695 -4.7110 -0.8849 25 6 1.8639 -3.5215 -0.7972 26 9 3.0753 -3.3996 -1.3826 27 1 -0.4850 0.8401 -0.0004 28 1 -0.3896 -1.7495 1.0578 29 1 -2.1474 -4.7675 1.4011 30 1 -4.6619 -3.8072 1.0274 31 1 -4.0643 -3.3784 2.6483 32 1 -4.3558 -0.9732 2.1185 33 1 -4.9533 -1.4027 0.4978 34 1 -6.8269 -2.6630 1.5235 35 1 -6.2287 -2.2332 3.1438 36 1 -6.5209 0.1716 2.6127 37 1 -7.1188 -0.2589 0.9924 38 1 -8.9918 -1.5189 2.0176 39 1 -8.3945 -1.0886 3.6382 40 1 -8.6861 1.3157 3.1083 41 1 -9.2836 0.8861 1.4875 42 1 -11.1571 -0.3742 2.5112 43 1 -10.5603 0.0550 4.1323 44 1 -11.3710 2.0083 2.0793 45 1 -12.2866 1.5587 3.3927 46 1 -0.6070 -5.7753 -0.3597 47 1 1.5968 -5.5447 -1.4221 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219518560.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:56 Heat of formation + Delta-G solvation = -118.073264 kcal Electronic energy + Delta-G solvation = -26019.035152 eV Core-core repulsion = 22113.486218 eV Total energy + Delta-G solvation = -3905.548934 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -49.16931 -41.08145 -38.87472 -37.78347 -36.13218 -35.88588 -34.85061 -33.52642 -31.62162 -30.70010 -29.31062 -27.29927 -26.49640 -23.90839 -23.28204 -22.41003 -21.91178 -21.63126 -20.89061 -19.50705 -17.92533 -17.86615 -17.59203 -17.18300 -16.86906 -16.64635 -16.28757 -16.06543 -15.95216 -15.60967 -15.13861 -15.10226 -14.65551 -14.41790 -14.23748 -13.94123 -13.69964 -13.61961 -13.41588 -13.31013 -13.03539 -12.89482 -12.79578 -12.65205 -12.39438 -12.23454 -12.13701 -12.01409 -11.76839 -11.53566 -11.52016 -11.39201 -11.30290 -11.10843 -10.71656 -10.38433 -9.63167 -9.35299 -8.71276 -8.36949 -6.43112 0.70365 0.95320 1.33405 1.43660 1.47221 1.93031 2.20411 2.38894 2.77537 3.49599 3.54582 3.88486 3.93246 4.01058 4.06204 4.14645 4.17522 4.34770 4.36482 4.42414 4.54022 4.66107 4.66471 4.72544 4.79096 4.84576 4.97189 5.01195 5.03258 5.07278 5.10628 5.14124 5.23696 5.26011 5.30319 5.30823 5.44936 5.52875 5.58411 5.65777 5.83869 5.85479 6.13359 6.22440 6.29131 6.56799 6.58955 6.79626 6.89131 6.93274 7.57321 8.38744 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014235 B = 0.002307 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.473597 B =12132.191699 C =13939.203439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.024 3.976 3 Si 0.984 3.016 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.500 4.500 8 H 0.067 0.933 9 C 0.055 3.945 10 C -0.157 4.157 11 C 0.134 3.866 12 N -0.663 5.663 13 C 0.478 3.522 14 O -0.537 6.537 15 C -0.121 4.121 16 C -0.103 4.103 17 C -0.107 4.107 18 C -0.122 4.122 19 C -0.110 4.110 20 C -0.119 4.119 21 C 0.061 3.939 22 N -0.866 5.866 23 C -0.216 4.216 24 C -0.113 4.113 25 C -0.065 4.065 26 F -0.171 7.171 27 H 0.281 0.719 28 H 0.135 0.865 29 H 0.421 0.579 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.043 0.957 33 H 0.045 0.955 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.345 0.655 45 H 0.349 0.651 46 H 0.148 0.852 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.145 -5.248 6.719 22.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.191 4.191 3 Si 0.804 3.196 4 H -0.189 1.189 5 H -0.191 1.191 6 H -0.182 1.182 7 C -0.530 4.530 8 H 0.085 0.915 9 C 0.051 3.949 10 C -0.178 4.178 11 C 0.040 3.960 12 N -0.310 5.310 13 C 0.266 3.734 14 O -0.412 6.412 15 C -0.160 4.160 16 C -0.141 4.141 17 C -0.144 4.144 18 C -0.159 4.159 19 C -0.148 4.148 20 C -0.157 4.157 21 C -0.070 4.070 22 N -0.397 5.397 23 C -0.237 4.237 24 C -0.132 4.132 25 C -0.086 4.086 26 F -0.150 7.150 27 H 0.092 0.908 28 H 0.152 0.848 29 H 0.259 0.741 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.052 0.948 43 H 0.089 0.911 44 H 0.157 0.843 45 H 0.163 0.837 46 H 0.165 0.835 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -20.586 -4.029 6.916 22.087 hybrid contribution 0.325 0.157 -0.886 0.957 sum -20.261 -3.872 6.030 21.491 Atomic orbital electron populations 1.69988 1.07757 1.29701 1.34924 1.26779 0.95960 1.04148 0.92234 0.85235 0.78563 0.75875 0.79896 1.18932 1.19136 1.18171 1.19511 0.94518 0.91293 1.47704 0.91454 1.17950 0.93818 0.92223 0.90860 1.21575 0.95338 0.97646 1.03270 1.17868 0.86015 0.95152 0.96988 1.43404 1.13494 1.15785 1.58341 1.21962 0.88609 0.83888 0.78934 1.90944 1.77851 1.26383 1.46037 1.21686 0.89363 1.00836 1.04138 1.21297 0.96015 0.95855 1.00912 1.21531 0.93294 0.97719 1.01905 1.21578 0.95884 0.97696 1.00770 1.21487 0.94620 0.96986 1.01696 1.21572 0.95348 0.97997 1.00749 1.21804 0.93995 0.90228 1.00925 1.58727 1.22850 1.29638 1.28504 1.20437 0.97449 0.99523 1.06250 1.20671 0.95693 0.95338 1.01497 1.18391 0.84945 0.98588 1.06661 1.91227 1.43530 1.96971 1.83310 0.90805 0.84759 0.74108 0.86110 0.86291 0.93775 0.93600 0.90398 0.90558 0.93114 0.92896 0.91136 0.91277 0.92610 0.92511 0.94798 0.91112 0.84265 0.83747 0.83466 0.84460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -45.91 10.55 21.82 0.23 -45.68 16 2 C 0.02 1.34 5.42 85.25 0.46 1.80 16 3 Si 0.98 42.45 29.56 68.60 2.03 44.48 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.50 -29.58 8.69 23.43 0.20 -29.37 16 8 H 0.07 3.93 7.84 -2.91 -0.02 3.91 16 9 C 0.06 3.19 5.55 -21.26 -0.12 3.08 16 10 C -0.16 -8.56 7.30 22.84 0.17 -8.39 16 11 C 0.13 5.92 6.29 38.08 0.24 6.16 16 12 N -0.66 -22.13 5.34 -303.61 -1.62 -23.75 16 13 C 0.48 16.80 7.67 87.66 0.67 17.47 16 14 O -0.54 -25.75 13.37 -3.04 -0.04 -25.79 16 15 C -0.12 -2.59 5.70 29.85 0.17 -2.42 16 16 C -0.10 -2.47 4.50 30.60 0.14 -2.33 16 17 C -0.11 -1.73 5.21 30.59 0.16 -1.57 16 18 C -0.12 -2.10 5.21 30.59 0.16 -1.94 16 19 C -0.11 -1.46 5.21 30.59 0.16 -1.30 16 20 C -0.12 -1.71 5.47 30.59 0.17 -1.54 16 21 C 0.06 0.75 6.79 86.30 0.59 1.34 16 22 N -0.87 -10.63 9.62 -186.72 -1.80 -12.43 16 23 C -0.22 -8.54 9.97 22.57 0.22 -8.31 16 24 C -0.11 -4.93 10.00 22.25 0.22 -4.70 16 25 C -0.07 -3.48 7.31 22.89 0.17 -3.31 16 26 F -0.17 -9.13 16.82 44.97 0.76 -8.37 16 27 H 0.28 15.18 8.30 -92.71 -0.77 14.41 16 28 H 0.13 7.99 4.35 -2.91 -0.01 7.98 16 29 H 0.42 9.55 8.82 -92.71 -0.82 8.73 16 30 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.04 1.29 8.10 -2.39 -0.02 1.27 16 33 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 41 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.34 3.62 8.99 -89.69 -0.81 2.81 16 45 H 0.35 3.06 9.08 -89.70 -0.81 2.24 16 46 H 0.15 4.41 8.06 -2.91 -0.02 4.38 16 47 H 0.14 4.99 8.06 -2.92 -0.02 4.97 16 Total: -1.00 -75.21 390.27 1.90 -73.31 By element: Atomic # 1 Polarization: 35.00 SS G_CDS: -1.44 Total: 33.56 kcal Atomic # 6 Polarization: -39.12 SS G_CDS: 3.78 Total: -35.34 kcal Atomic # 7 Polarization: -78.67 SS G_CDS: -3.19 Total: -81.85 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.04 Total: -25.79 kcal Atomic # 9 Polarization: -9.13 SS G_CDS: 0.76 Total: -8.37 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -75.21 1.90 -73.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219518560.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.763 kcal (2) G-P(sol) polarization free energy of solvation -75.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds