Wall clock time and date at job start Sat Apr 11 2020 00:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34232 * 116.99943 * 2 1 4 4 O 1.20821 * 119.99886 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99813 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.46976 * 52.74587 * 5 3 2 7 7 O 1.42899 * 109.46770 * 172.74281 * 5 3 2 8 8 C 1.42898 * 114.00428 * 273.15563 * 7 5 3 9 9 H 1.08998 * 109.46920 * 26.85000 * 8 7 5 10 10 C 1.50697 * 109.46970 * 266.85708 * 8 7 5 11 11 H 1.08000 * 120.00640 * 125.48454 * 10 8 7 12 12 C 1.37880 * 120.00169 * 305.48653 * 10 8 7 13 13 N 1.31518 * 119.99693 * 359.97438 * 12 10 8 14 14 Si 1.86796 * 120.00214 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47167 * 60.00040 * 14 12 10 16 16 H 1.48507 * 109.47352 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47217 * 299.99555 * 14 12 10 18 18 C 1.52995 * 109.47374 * 146.85477 * 8 7 5 19 19 N 1.46895 * 109.47254 * 194.90102 * 18 8 7 20 20 C 1.46892 * 109.47207 * 64.36873 * 19 18 8 21 21 C 1.46900 * 109.47073 * 184.37374 * 19 18 8 22 22 C 1.46907 * 109.47001 * 304.36748 * 19 18 8 23 23 C 1.50699 * 109.47151 * 292.74458 * 5 3 2 24 24 C 1.38227 * 120.00147 * 279.72922 * 23 5 3 25 25 C 1.38238 * 120.00122 * 179.79250 * 24 23 5 26 26 C 1.38235 * 119.99590 * 0.43460 * 25 24 23 27 27 C 1.38234 * 120.00137 * 359.81664 * 26 25 24 28 28 C 1.38228 * 120.00303 * 359.97438 * 27 26 25 29 29 H 1.09003 * 109.47417 * 60.00244 * 1 2 3 30 30 H 1.08999 * 109.47265 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47532 * 300.00345 * 1 2 3 32 32 H 0.96999 * 119.99584 * 179.97438 * 13 12 10 33 33 H 1.09001 * 109.46956 * 314.90449 * 18 8 7 34 34 H 1.09003 * 109.46858 * 74.89690 * 18 8 7 35 35 H 1.09008 * 109.47382 * 61.28915 * 20 19 18 36 36 H 1.09004 * 109.47532 * 181.28669 * 20 19 18 37 37 H 1.09001 * 109.47527 * 301.28926 * 20 19 18 38 38 H 1.08998 * 109.47717 * 59.99499 * 21 19 18 39 39 H 1.09004 * 109.47252 * 180.02562 * 21 19 18 40 40 H 1.09004 * 109.46755 * 299.99506 * 21 19 18 41 41 H 1.09005 * 109.46745 * 70.03146 * 22 19 18 42 42 H 1.09002 * 109.46627 * 190.02793 * 22 19 18 43 43 H 1.08991 * 109.46990 * 310.02792 * 22 19 18 44 44 H 1.08003 * 119.99722 * 359.97438 * 24 23 5 45 45 H 1.08000 * 120.00058 * 180.27478 * 25 24 23 46 46 H 1.08003 * 119.99399 * 179.83759 * 26 25 24 47 47 H 1.08001 * 119.99858 * 180.02562 * 27 26 25 48 48 H 1.07994 * 120.00305 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9620 0.6724 -0.8171 7 8 3.9721 2.6344 -0.1697 8 6 4.0774 3.0430 -1.5350 9 1 3.4047 2.4421 -2.1469 10 6 5.4947 2.8501 -2.0091 11 1 5.6932 2.2631 -2.8937 12 6 6.5383 3.4231 -1.3137 13 7 6.2967 4.1384 -0.2368 14 14 8.2952 3.1847 -1.9018 15 1 8.4361 3.7318 -3.2751 16 1 9.2241 3.8971 -0.9880 17 1 8.6222 1.7362 -1.9100 18 6 3.6953 4.5195 -1.6565 19 7 3.4561 4.8489 -3.0679 20 6 2.2961 4.0924 -3.5574 21 6 3.1921 6.2882 -3.1968 22 6 4.6413 4.4956 -3.8608 23 6 4.0962 0.7528 1.3112 24 6 4.0930 1.5641 2.4304 25 6 4.5751 1.0838 3.6336 26 6 5.0686 -0.2048 3.7155 27 6 5.0766 -1.0144 2.5950 28 6 4.5906 -0.5356 1.3929 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 7.0309 4.5412 0.2527 33 1 2.7895 4.7090 -1.0805 34 1 4.5065 5.1375 -1.2715 35 1 1.4119 4.3714 -2.9841 36 1 2.1324 4.3194 -4.6109 37 1 2.4828 3.0248 -3.4406 38 1 4.0528 6.8496 -2.8335 39 1 3.0141 6.5326 -4.2441 40 1 2.3127 6.5503 -2.6085 41 1 4.7343 3.4107 -3.9114 42 1 4.5377 4.8988 -4.8682 43 1 5.5308 4.9151 -3.3912 44 1 3.7111 2.5723 2.3653 45 1 4.5684 1.7162 4.5091 46 1 5.4477 -0.5791 4.6550 47 1 5.4619 -2.0213 2.6591 48 1 4.5972 -1.1679 0.5174 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223067476.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:11 Heat of formation + Delta-G solvation = 11.482092 kcal Electronic energy + Delta-G solvation = -29680.043596 eV Core-core repulsion = 25819.509986 eV Total energy + Delta-G solvation = -3860.533610 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.185 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -43.20072 -41.46094 -39.75137 -38.35524 -37.03729 -34.70212 -32.87180 -31.52408 -31.16512 -30.29581 -30.09935 -29.19843 -27.75589 -27.03322 -24.73886 -23.28111 -23.02090 -22.46600 -21.46350 -19.18860 -18.70449 -18.43508 -18.33701 -18.05835 -17.50228 -17.31970 -16.94079 -16.56410 -16.11058 -15.85254 -15.13731 -15.07681 -14.90762 -14.73552 -14.55881 -14.16853 -14.05001 -14.02971 -13.97633 -13.92691 -13.75041 -13.67013 -13.30576 -13.18622 -12.98162 -12.74783 -12.61245 -12.26678 -12.16143 -11.81316 -11.78028 -11.66191 -11.61111 -11.19789 -11.13572 -10.15626 -9.96397 -9.48405 -9.38988 -7.72935 -5.99706 0.40281 0.63774 0.84449 1.35821 1.81121 1.99234 2.15051 2.21723 2.35043 2.47281 2.47967 2.92087 3.07564 3.22575 3.30775 3.34796 3.48986 3.58929 3.77609 3.79938 3.81519 3.89472 3.93208 4.04301 4.09840 4.20647 4.22024 4.27788 4.29532 4.40757 4.43362 4.48531 4.55051 4.62601 4.64645 4.69628 4.90786 5.02298 5.16353 5.30330 5.45722 5.49783 5.83518 5.92937 5.93302 6.07588 6.18657 6.37372 6.54368 6.92849 7.14931 7.81944 9.27549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.355 6.355 3 C 0.439 3.561 4 O -0.503 6.503 5 C 0.154 3.846 6 H 0.103 0.897 7 O -0.310 6.310 8 C 0.200 3.800 9 H 0.025 0.975 10 C -0.600 4.600 11 H 0.074 0.926 12 C 0.095 3.905 13 N -0.835 5.835 14 Si 0.887 3.113 15 H -0.272 1.272 16 H -0.279 1.279 17 H -0.268 1.268 18 C -0.001 4.001 19 N -0.256 5.256 20 C -0.045 4.045 21 C -0.036 4.036 22 C -0.031 4.031 23 C -0.081 4.081 24 C -0.076 4.076 25 C -0.126 4.126 26 C -0.113 4.113 27 C -0.126 4.126 28 C -0.095 4.095 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.279 0.721 33 H 0.101 0.899 34 H 0.149 0.851 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.139 0.861 42 H 0.087 0.913 43 H 0.124 0.876 44 H 0.127 0.873 45 H 0.122 0.878 46 H 0.121 0.879 47 H 0.123 0.877 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.060 3.933 -9.244 13.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.272 6.272 3 C 0.281 3.719 4 O -0.390 6.390 5 C 0.093 3.907 6 H 0.121 0.879 7 O -0.226 6.226 8 C 0.144 3.856 9 H 0.042 0.958 10 C -0.635 4.635 11 H 0.092 0.908 12 C -0.118 4.118 13 N -0.466 5.466 14 Si 0.713 3.287 15 H -0.197 1.197 16 H -0.204 1.204 17 H -0.192 1.192 18 C -0.121 4.121 19 N 0.085 4.915 20 C -0.187 4.187 21 C -0.178 4.178 22 C -0.172 4.172 23 C -0.081 4.081 24 C -0.094 4.094 25 C -0.145 4.145 26 C -0.131 4.131 27 C -0.144 4.144 28 C -0.113 4.113 29 H 0.078 0.922 30 H 0.120 0.880 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.166 0.834 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.157 0.843 42 H 0.106 0.894 43 H 0.142 0.858 44 H 0.145 0.855 45 H 0.140 0.860 46 H 0.139 0.861 47 H 0.141 0.859 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.169 4.491 -8.899 13.544 hybrid contribution 0.747 -0.213 -0.240 0.813 sum -8.422 4.278 -9.139 13.143 Atomic orbital electron populations 1.23261 0.76589 1.03802 1.02305 1.86569 1.23216 1.33647 1.83766 1.25172 0.93217 0.81514 0.72006 1.90593 1.66925 1.36425 1.45027 1.20125 0.84102 0.88649 0.97811 0.87917 1.88288 1.85171 1.22235 1.26927 1.19941 0.96286 0.87391 0.82023 0.95767 1.21386 0.90241 1.37570 1.14353 0.90785 1.24957 0.99693 0.93360 0.93761 1.69793 1.33979 1.28587 1.14280 0.86685 0.83095 0.79992 0.78928 1.19668 1.20384 1.19242 1.24030 1.06555 1.05898 0.75651 1.45728 1.14938 1.13688 1.17146 1.24046 0.89196 1.01494 1.03983 1.23978 1.07593 0.78982 1.07278 1.24480 0.87866 1.09343 0.95481 1.19153 1.01560 0.94449 0.92926 1.21003 0.97290 0.99368 0.91701 1.21156 0.99513 0.95961 0.97822 1.21209 0.98983 0.94329 0.98566 1.21065 1.00559 0.99995 0.92788 1.20937 0.97486 0.94643 0.98212 0.92172 0.88022 0.91901 0.91095 0.88083 0.83365 0.87009 0.87095 0.86468 0.86443 0.87077 0.87056 0.84319 0.89402 0.85774 0.85462 0.86034 0.86124 0.85873 0.85793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 10.56 101.05 1.07 1.07 16 2 O -0.36 -1.02 10.57 -39.26 -0.41 -1.44 16 3 C 0.44 1.69 7.07 36.01 0.25 1.94 16 4 O -0.50 -2.50 16.25 -25.44 -0.41 -2.91 16 5 C 0.15 0.66 2.64 -29.04 -0.08 0.58 16 6 H 0.10 0.34 7.71 -51.93 -0.40 -0.06 16 7 O -0.31 -1.62 7.57 -55.08 -0.42 -2.03 16 8 C 0.20 0.30 1.73 -27.89 -0.05 0.25 16 9 H 0.02 -0.01 5.34 -51.93 -0.28 -0.29 16 10 C -0.60 -2.36 5.58 -34.44 -0.19 -2.55 16 11 H 0.07 0.26 6.89 -52.49 -0.36 -0.10 16 12 C 0.09 0.64 4.85 -17.82 -0.09 0.55 16 13 N -0.83 -6.94 11.09 55.43 0.61 -6.32 16 14 Si 0.89 6.34 29.54 -169.99 -5.02 1.32 16 15 H -0.27 -1.68 7.11 56.52 0.40 -1.28 16 16 H -0.28 -2.52 7.11 56.52 0.40 -2.12 16 17 H -0.27 -2.38 7.11 56.52 0.40 -1.98 16 18 C 0.00 0.00 3.85 -3.83 -0.01 -0.01 16 19 N -0.26 2.10 0.05 -395.62 -0.02 2.08 16 20 C -0.05 0.44 7.78 60.06 0.47 0.91 16 21 C -0.04 0.40 7.99 60.06 0.48 0.88 16 22 C -0.03 0.22 6.71 60.07 0.40 0.63 16 23 C -0.08 -0.43 4.96 -104.62 -0.52 -0.95 16 24 C -0.08 -0.44 9.35 -39.59 -0.37 -0.81 16 25 C -0.13 -0.57 10.05 -39.58 -0.40 -0.97 16 26 C -0.11 -0.42 10.05 -39.58 -0.40 -0.82 16 27 C -0.13 -0.45 10.05 -39.59 -0.40 -0.84 16 28 C -0.09 -0.39 9.67 -39.58 -0.38 -0.77 16 29 H 0.06 -0.06 8.13 -51.93 -0.42 -0.48 16 30 H 0.10 -0.23 8.14 -51.93 -0.42 -0.65 16 31 H 0.06 0.03 8.13 -51.93 -0.42 -0.39 16 32 H 0.28 2.58 8.31 -40.82 -0.34 2.24 16 33 H 0.10 -0.24 8.11 -51.93 -0.42 -0.66 16 34 H 0.15 0.02 6.28 -51.93 -0.33 -0.31 16 35 H 0.11 -1.11 8.13 -51.92 -0.42 -1.53 16 36 H 0.11 -1.37 8.14 -51.93 -0.42 -1.79 16 37 H 0.12 -0.95 5.90 -51.93 -0.31 -1.26 16 38 H 0.12 -1.21 8.12 -51.93 -0.42 -1.63 16 39 H 0.11 -1.45 8.07 -51.93 -0.42 -1.87 16 40 H 0.11 -1.27 8.14 -51.93 -0.42 -1.70 16 41 H 0.14 -0.75 5.20 -51.93 -0.27 -1.02 16 42 H 0.09 -0.90 7.99 -51.93 -0.41 -1.32 16 43 H 0.12 -0.57 7.22 -51.93 -0.37 -0.95 16 44 H 0.13 0.81 7.77 -52.48 -0.41 0.40 16 45 H 0.12 0.34 8.06 -52.49 -0.42 -0.09 16 46 H 0.12 0.19 8.06 -52.48 -0.42 -0.23 16 47 H 0.12 0.17 8.06 -52.49 -0.42 -0.26 16 48 H 0.12 0.27 8.04 -52.49 -0.42 -0.15 16 LS Contribution 383.20 15.07 5.77 5.77 Total: 0.00 -16.05 383.20 -7.87 -23.91 By element: Atomic # 1 Polarization: -11.71 SS G_CDS: -7.76 Total: -19.47 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -0.21 Total: -0.92 kcal Atomic # 7 Polarization: -4.84 SS G_CDS: 0.60 Total: -4.24 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -1.25 Total: -6.38 kcal Atomic # 14 Polarization: 6.34 SS G_CDS: -5.02 Total: 1.32 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -16.05 -7.87 -23.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223067476.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.396 kcal (2) G-P(sol) polarization free energy of solvation -16.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds