Wall clock time and date at job start Sat Apr 11 2020 00:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34232 * 116.99943 * 2 1 4 4 O 1.20821 * 119.99886 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99813 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.46976 * 52.74587 * 5 3 2 7 7 O 1.42899 * 109.46770 * 172.74281 * 5 3 2 8 8 C 1.42898 * 114.00428 * 273.15563 * 7 5 3 9 9 H 1.08998 * 109.46920 * 26.85000 * 8 7 5 10 10 C 1.50697 * 109.46970 * 266.85708 * 8 7 5 11 11 H 1.08000 * 120.00640 * 125.48454 * 10 8 7 12 12 C 1.37880 * 120.00169 * 305.48653 * 10 8 7 13 13 N 1.31518 * 119.99693 * 359.97438 * 12 10 8 14 14 Si 1.86796 * 120.00214 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47167 * 60.00040 * 14 12 10 16 16 H 1.48507 * 109.47352 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47217 * 299.99555 * 14 12 10 18 18 C 1.52995 * 109.47374 * 146.85477 * 8 7 5 19 19 N 1.46895 * 109.47254 * 194.90102 * 18 8 7 20 20 C 1.46892 * 109.47207 * 64.36873 * 19 18 8 21 21 C 1.46900 * 109.47073 * 184.37374 * 19 18 8 22 22 C 1.46907 * 109.47001 * 304.36748 * 19 18 8 23 23 C 1.50699 * 109.47151 * 292.74458 * 5 3 2 24 24 C 1.38227 * 120.00147 * 279.72922 * 23 5 3 25 25 C 1.38238 * 120.00122 * 179.79250 * 24 23 5 26 26 C 1.38235 * 119.99590 * 0.43460 * 25 24 23 27 27 C 1.38234 * 120.00137 * 359.81664 * 26 25 24 28 28 C 1.38228 * 120.00303 * 359.97438 * 27 26 25 29 29 H 1.09003 * 109.47417 * 60.00244 * 1 2 3 30 30 H 1.08999 * 109.47265 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47532 * 300.00345 * 1 2 3 32 32 H 0.96999 * 119.99584 * 179.97438 * 13 12 10 33 33 H 1.09001 * 109.46956 * 314.90449 * 18 8 7 34 34 H 1.09003 * 109.46858 * 74.89690 * 18 8 7 35 35 H 1.09008 * 109.47382 * 61.28915 * 20 19 18 36 36 H 1.09004 * 109.47532 * 181.28669 * 20 19 18 37 37 H 1.09001 * 109.47527 * 301.28926 * 20 19 18 38 38 H 1.08998 * 109.47717 * 59.99499 * 21 19 18 39 39 H 1.09004 * 109.47252 * 180.02562 * 21 19 18 40 40 H 1.09004 * 109.46755 * 299.99506 * 21 19 18 41 41 H 1.09005 * 109.46745 * 70.03146 * 22 19 18 42 42 H 1.09002 * 109.46627 * 190.02793 * 22 19 18 43 43 H 1.08991 * 109.46990 * 310.02792 * 22 19 18 44 44 H 1.08003 * 119.99722 * 359.97438 * 24 23 5 45 45 H 1.08000 * 120.00058 * 180.27478 * 25 24 23 46 46 H 1.08003 * 119.99399 * 179.83759 * 26 25 24 47 47 H 1.08001 * 119.99858 * 180.02562 * 27 26 25 48 48 H 1.07994 * 120.00305 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9620 0.6724 -0.8171 7 8 3.9721 2.6344 -0.1697 8 6 4.0774 3.0430 -1.5350 9 1 3.4047 2.4421 -2.1469 10 6 5.4947 2.8501 -2.0091 11 1 5.6932 2.2631 -2.8937 12 6 6.5383 3.4231 -1.3137 13 7 6.2967 4.1384 -0.2368 14 14 8.2952 3.1847 -1.9018 15 1 8.4361 3.7318 -3.2751 16 1 9.2241 3.8971 -0.9880 17 1 8.6222 1.7362 -1.9100 18 6 3.6953 4.5195 -1.6565 19 7 3.4561 4.8489 -3.0679 20 6 2.2961 4.0924 -3.5574 21 6 3.1921 6.2882 -3.1968 22 6 4.6413 4.4956 -3.8608 23 6 4.0962 0.7528 1.3112 24 6 4.0930 1.5641 2.4304 25 6 4.5751 1.0838 3.6336 26 6 5.0686 -0.2048 3.7155 27 6 5.0766 -1.0144 2.5950 28 6 4.5906 -0.5356 1.3929 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 7.0309 4.5412 0.2527 33 1 2.7895 4.7090 -1.0805 34 1 4.5065 5.1375 -1.2715 35 1 1.4119 4.3714 -2.9841 36 1 2.1324 4.3194 -4.6109 37 1 2.4828 3.0248 -3.4406 38 1 4.0528 6.8496 -2.8335 39 1 3.0141 6.5326 -4.2441 40 1 2.3127 6.5503 -2.6085 41 1 4.7343 3.4107 -3.9114 42 1 4.5377 4.8988 -4.8682 43 1 5.5308 4.9151 -3.3912 44 1 3.7111 2.5723 2.3653 45 1 4.5684 1.7162 4.5091 46 1 5.4477 -0.5791 4.6550 47 1 5.4619 -2.0213 2.6591 48 1 4.5972 -1.1679 0.5174 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223067476.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:09 Heat of formation + Delta-G solvation = 11.138769 kcal Electronic energy + Delta-G solvation = -29680.058484 eV Core-core repulsion = 25819.509986 eV Total energy + Delta-G solvation = -3860.548498 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.185 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.68267 -41.69487 -40.02971 -38.57005 -37.28508 -35.05256 -33.17346 -31.81074 -31.15551 -29.62097 -29.55352 -29.31153 -27.66247 -27.22569 -24.58546 -23.51063 -23.23510 -22.43123 -21.72030 -19.27235 -18.87966 -18.25056 -18.02790 -17.86175 -17.68454 -17.20223 -17.14979 -16.67126 -16.43778 -16.08645 -15.33068 -15.26381 -15.02032 -14.51610 -14.33112 -14.24113 -14.06541 -13.92044 -13.59356 -13.43391 -13.34004 -13.30541 -13.18701 -13.13467 -13.06014 -12.86934 -12.76053 -12.67751 -12.39721 -12.33018 -12.07056 -11.90029 -11.81082 -11.52699 -11.33022 -10.67936 -10.26203 -9.80840 -9.70417 -8.25440 -6.43838 0.31755 0.51573 0.99650 1.08425 1.36144 1.48187 1.57207 1.65181 2.33000 2.63514 2.93395 3.00847 3.12176 3.17599 3.47030 3.68826 3.83299 3.92046 3.99925 4.14212 4.17387 4.22906 4.26550 4.28330 4.30255 4.30709 4.32599 4.41167 4.47712 4.53173 4.62770 4.67433 4.68966 4.72945 4.73683 4.76785 4.79108 5.02015 5.15017 5.16996 5.21399 5.28704 5.53901 5.59560 5.61532 5.64505 5.83754 6.08148 6.25912 6.62361 6.83001 7.35001 8.73196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.445 3.555 4 O -0.517 6.517 5 C 0.153 3.847 6 H 0.109 0.891 7 O -0.334 6.334 8 C 0.189 3.811 9 H 0.047 0.953 10 C -0.570 4.570 11 H 0.081 0.919 12 C 0.076 3.924 13 N -0.859 5.859 14 Si 0.906 3.094 15 H -0.252 1.252 16 H -0.311 1.311 17 H -0.292 1.292 18 C 0.017 3.983 19 N -0.245 5.245 20 C -0.048 4.048 21 C -0.040 4.040 22 C -0.033 4.033 23 C -0.096 4.096 24 C -0.097 4.097 25 C -0.137 4.137 26 C -0.119 4.119 27 C -0.129 4.129 28 C -0.105 4.105 29 H 0.071 0.929 30 H 0.127 0.873 31 H 0.055 0.945 32 H 0.262 0.738 33 H 0.101 0.899 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.149 0.851 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.146 0.854 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.132 0.868 43 H 0.096 0.904 44 H 0.110 0.890 45 H 0.133 0.867 46 H 0.143 0.857 47 H 0.148 0.852 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.881 3.458 -11.262 16.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.288 3.712 4 O -0.406 6.406 5 C 0.092 3.908 6 H 0.127 0.873 7 O -0.251 6.251 8 C 0.132 3.868 9 H 0.065 0.935 10 C -0.607 4.607 11 H 0.099 0.901 12 C -0.132 4.132 13 N -0.494 5.494 14 Si 0.735 3.265 15 H -0.176 1.176 16 H -0.238 1.238 17 H -0.219 1.219 18 C -0.105 4.105 19 N 0.096 4.904 20 C -0.189 4.189 21 C -0.180 4.180 22 C -0.174 4.174 23 C -0.096 4.096 24 C -0.116 4.116 25 C -0.155 4.155 26 C -0.137 4.137 27 C -0.147 4.147 28 C -0.123 4.123 29 H 0.090 0.910 30 H 0.145 0.855 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.119 0.881 34 H 0.140 0.860 35 H 0.135 0.865 36 H 0.167 0.833 37 H 0.118 0.882 38 H 0.126 0.874 39 H 0.164 0.836 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.150 0.850 43 H 0.114 0.886 44 H 0.129 0.871 45 H 0.151 0.849 46 H 0.161 0.839 47 H 0.165 0.835 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.001 4.013 -10.962 16.040 hybrid contribution 1.274 -0.149 0.333 1.325 sum -9.727 3.865 -10.629 14.917 Atomic orbital electron populations 1.23535 0.74913 1.05577 1.02536 1.86549 1.24879 1.32943 1.83424 1.24994 0.92970 0.81607 0.71592 1.90574 1.67190 1.36946 1.45878 1.20139 0.84576 0.88502 0.97546 0.87328 1.88281 1.85471 1.22637 1.28716 1.20179 0.95313 0.90254 0.81005 0.93534 1.21654 0.91133 1.34733 1.13183 0.90150 1.25113 0.99717 0.94223 0.94105 1.69902 1.32656 1.31114 1.15704 0.86468 0.83231 0.77649 0.79117 1.17638 1.23816 1.21887 1.23459 1.05438 1.02259 0.79368 1.45569 1.15420 1.15571 1.13837 1.24212 0.88213 1.00192 1.06303 1.24187 1.07498 0.76670 1.09686 1.24373 0.87350 1.08209 0.97422 1.19396 1.01925 0.95054 0.93227 1.21007 0.98707 0.99013 0.92828 1.21379 0.99524 0.96819 0.97815 1.21520 0.98568 0.93913 0.99724 1.21431 0.99789 1.01052 0.92424 1.21231 0.97301 0.94454 0.99297 0.91027 0.85519 0.92627 0.92806 0.88102 0.86043 0.86543 0.83289 0.88156 0.87421 0.83583 0.86274 0.86130 0.84976 0.88558 0.87146 0.84950 0.83928 0.83473 0.84036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.18 16 2 O -0.36 -2.05 10.57 -51.44 -0.54 -2.60 16 3 C 0.45 3.74 7.07 71.24 0.50 4.24 16 4 O -0.52 -5.54 16.25 28.38 0.46 -5.08 16 5 C 0.15 1.50 2.64 29.10 0.08 1.58 16 6 H 0.11 0.80 7.71 -2.39 -0.02 0.78 16 7 O -0.33 -4.10 7.57 -130.00 -0.98 -5.08 16 8 C 0.19 0.75 1.73 29.85 0.05 0.80 16 9 H 0.05 -0.03 5.34 -2.39 -0.01 -0.05 16 10 C -0.57 -5.13 5.58 25.60 0.14 -4.98 16 11 H 0.08 0.59 6.89 -2.91 -0.02 0.57 16 12 C 0.08 1.20 4.85 84.65 0.41 1.61 16 13 N -0.86 -17.04 11.09 21.45 0.24 -16.80 16 14 Si 0.91 14.98 29.54 68.60 2.03 17.01 16 15 H -0.25 -3.23 7.11 99.48 0.71 -2.53 16 16 H -0.31 -6.76 7.11 99.48 0.71 -6.05 16 17 H -0.29 -5.92 7.11 99.48 0.71 -5.21 16 18 C 0.02 -0.07 3.85 86.30 0.33 0.26 16 19 N -0.25 4.25 0.05 ******* -0.07 4.18 16 20 C -0.05 1.03 7.78 127.69 0.99 2.02 16 21 C -0.04 0.93 7.99 127.69 1.02 1.95 16 22 C -0.03 0.50 6.71 127.69 0.86 1.35 16 23 C -0.10 -1.16 4.96 -19.87 -0.10 -1.26 16 24 C -0.10 -1.36 9.35 22.27 0.21 -1.15 16 25 C -0.14 -1.45 10.05 22.27 0.22 -1.23 16 26 C -0.12 -0.91 10.05 22.27 0.22 -0.68 16 27 C -0.13 -0.89 10.05 22.27 0.22 -0.67 16 28 C -0.10 -0.92 9.67 22.27 0.22 -0.70 16 29 H 0.07 -0.21 8.13 -2.39 -0.02 -0.23 16 30 H 0.13 -0.76 8.14 -2.39 -0.02 -0.78 16 31 H 0.05 0.06 8.13 -2.39 -0.02 0.04 16 32 H 0.26 5.92 8.31 -92.71 -0.77 5.15 16 33 H 0.10 -0.38 8.11 -2.39 -0.02 -0.40 16 34 H 0.12 0.29 6.28 -2.39 -0.01 0.28 16 35 H 0.12 -2.52 8.13 -2.38 -0.02 -2.54 16 36 H 0.15 -4.26 8.14 -2.39 -0.02 -4.28 16 37 H 0.10 -1.74 5.90 -2.39 -0.01 -1.76 16 38 H 0.11 -2.22 8.12 -2.39 -0.02 -2.24 16 39 H 0.15 -4.35 8.07 -2.38 -0.02 -4.37 16 40 H 0.12 -2.90 8.14 -2.38 -0.02 -2.92 16 41 H 0.12 -1.37 5.20 -2.38 -0.01 -1.39 16 42 H 0.13 -3.12 7.99 -2.39 -0.02 -3.14 16 43 H 0.10 -0.82 7.22 -2.39 -0.02 -0.84 16 44 H 0.11 1.81 7.77 -2.91 -0.02 1.78 16 45 H 0.13 0.93 8.06 -2.91 -0.02 0.91 16 46 H 0.14 0.36 8.06 -2.91 -0.02 0.33 16 47 H 0.15 0.21 8.06 -2.91 -0.02 0.19 16 48 H 0.14 0.59 8.04 -2.91 -0.02 0.56 16 Total: 0.00 -40.82 383.20 8.64 -32.18 By element: Atomic # 1 Polarization: -29.05 SS G_CDS: 0.93 Total: -28.12 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 6.58 Total: 4.31 kcal Atomic # 7 Polarization: -12.79 SS G_CDS: 0.17 Total: -12.62 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -1.07 Total: -12.76 kcal Atomic # 14 Polarization: 14.98 SS G_CDS: 2.03 Total: 17.01 kcal Total: -40.82 8.64 -32.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223067476.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.317 kcal (2) G-P(sol) polarization free energy of solvation -40.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds