Wall clock time and date at job start Sat Apr 11 2020 00:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45207 * 109.47056 * 2 1 4 4 C 1.34702 * 117.00181 * 179.97438 * 3 2 1 5 5 O 1.21475 * 120.00427 * 359.97438 * 4 3 2 6 6 C 1.47745 * 119.99930 * 179.97438 * 4 3 2 7 7 C 1.39655 * 120.12108 * 0.27717 * 6 4 3 8 8 C 1.37954 * 119.95514 * 180.27590 * 7 6 4 9 9 C 1.38294 * 120.21203 * 359.44446 * 8 7 6 10 10 C 1.38814 * 120.25260 * 0.28137 * 9 8 7 11 11 O 1.35905 * 119.98321 * 180.02562 * 10 9 8 12 12 C 1.42904 * 117.00341 * 5.61871 * 11 10 9 13 13 H 1.09006 * 109.46601 * 32.25506 * 12 11 10 14 14 C 1.50700 * 109.47024 * 272.25862 * 12 11 10 15 15 H 1.07994 * 120.00231 * 119.99460 * 14 12 11 16 16 C 1.37878 * 119.99643 * 299.99153 * 14 12 11 17 17 N 1.31518 * 120.00181 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99916 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47149 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47116 * 120.00381 * 18 16 14 21 21 H 1.48501 * 109.47173 * 240.00300 * 18 16 14 22 22 C 1.52996 * 109.47328 * 152.25277 * 12 11 10 23 23 N 1.46903 * 109.47529 * 294.94981 * 22 12 11 24 24 C 1.46905 * 109.46877 * 63.66983 * 23 22 12 25 25 C 1.46894 * 109.47504 * 183.67130 * 23 22 12 26 26 C 1.46904 * 109.46935 * 303.67405 * 23 22 12 27 27 C 1.38483 * 120.03481 * 359.97438 * 10 9 8 28 28 H 1.09002 * 109.46513 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47553 * 300.00509 * 1 2 3 30 30 H 1.08997 * 109.47204 * 60.00994 * 1 2 3 31 31 H 1.08997 * 109.47966 * 239.99836 * 2 1 3 32 32 H 1.09001 * 109.47490 * 119.99404 * 2 1 3 33 33 H 1.07995 * 120.02429 * 359.97438 * 7 6 4 34 34 H 1.08000 * 119.89288 * 179.72778 * 8 7 6 35 35 H 1.08001 * 119.87051 * 180.29686 * 9 8 7 36 36 H 0.96998 * 119.99753 * 179.97438 * 17 16 14 37 37 H 1.08998 * 109.47050 * 54.95271 * 22 12 11 38 38 H 1.09007 * 109.46836 * 174.95067 * 22 12 11 39 39 H 1.08994 * 109.47005 * 51.04872 * 24 23 22 40 40 H 1.09000 * 109.47058 * 171.05590 * 24 23 22 41 41 H 1.09001 * 109.46693 * 291.05385 * 24 23 22 42 42 H 1.08997 * 109.47004 * 59.99970 * 25 23 22 43 43 H 1.08997 * 109.47162 * 180.02562 * 25 23 22 44 44 H 1.09006 * 109.47164 * 300.00095 * 25 23 22 45 45 H 1.09000 * 109.47100 * 59.99551 * 26 23 22 46 46 H 1.08997 * 109.46986 * 179.97438 * 26 23 22 47 47 H 1.08997 * 109.47025 * 299.99695 * 26 23 22 48 48 H 1.07994 * 120.10620 * 179.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3494 1.5456 0.0005 5 8 4.0895 0.5823 0.0015 6 6 3.9140 2.9109 0.0000 7 6 3.0656 4.0202 0.0048 8 6 3.5964 5.2934 -0.0015 9 6 4.9673 5.4759 -0.0009 10 6 5.8187 4.3795 0.0001 11 8 7.1650 4.5651 0.0012 12 6 7.6347 5.9090 0.1259 13 1 6.9401 6.4809 0.7413 14 6 7.7291 6.5370 -1.2408 15 1 7.1516 7.4202 -1.4703 16 6 8.5528 5.9838 -2.1982 17 7 9.2558 4.9080 -1.9188 18 14 8.6704 6.7626 -3.8920 19 1 7.7871 7.9549 -3.9511 20 1 10.0737 7.1734 -4.1516 21 1 8.2444 5.7789 -4.9197 22 6 9.0163 5.9076 0.7831 23 7 8.9033 5.4072 2.1597 24 6 8.4520 4.0094 2.1371 25 6 10.2133 5.4882 2.8193 26 6 7.9313 6.2237 2.8992 27 6 5.2970 3.0967 0.0010 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 1.9946 3.8813 0.0085 34 1 2.9394 6.1506 -0.0022 35 1 5.3770 6.4752 -0.0010 36 1 9.8350 4.5187 -2.5925 37 1 9.6877 5.2627 0.2161 38 1 9.4131 6.9228 0.7969 39 1 9.0831 3.4348 1.4593 40 1 8.5198 3.5895 3.1406 41 1 7.4181 3.9670 1.7945 42 1 10.5481 6.5254 2.8360 43 1 10.1295 5.1166 3.8405 44 1 10.9345 4.8824 2.2705 45 1 6.9593 6.1636 2.4097 46 1 7.8472 5.8522 3.9204 47 1 8.2662 7.2608 2.9159 48 1 5.9583 2.2429 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226060778.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:46 Heat of formation + Delta-G solvation = 9.771479 kcal Electronic energy + Delta-G solvation = -28623.555030 eV Core-core repulsion = 24762.947242 eV Total energy + Delta-G solvation = -3860.607788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.185 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.40944 -41.41060 -40.37955 -38.11902 -37.31059 -34.79359 -32.81402 -32.18422 -31.69350 -30.57304 -30.32928 -30.12584 -27.91892 -25.79035 -25.10610 -23.87737 -23.15768 -22.83851 -21.41970 -19.65937 -19.05487 -18.60240 -18.31286 -18.12092 -17.64004 -17.38894 -16.90797 -16.65396 -16.25180 -16.08041 -15.53483 -15.05136 -15.00414 -14.91353 -14.71105 -14.34443 -14.29336 -14.16499 -14.04392 -13.94541 -13.76399 -13.66543 -13.48404 -13.44051 -12.96150 -12.87505 -12.58340 -12.53667 -12.46162 -12.21337 -12.02226 -11.71821 -11.40476 -11.37301 -11.16022 -10.86162 -10.23012 -9.90427 -8.87767 -7.83363 -6.05965 -0.12797 0.27928 0.63514 1.69777 1.75748 2.06624 2.22662 2.23046 2.25184 2.30267 2.33884 2.67647 2.95376 2.99937 3.11082 3.17363 3.37504 3.46904 3.60735 3.64582 3.68928 3.73163 3.76506 3.79798 4.02745 4.04277 4.07397 4.08694 4.13817 4.20705 4.31915 4.36448 4.39013 4.43954 4.62397 4.64595 4.88004 4.88714 4.99068 5.08636 5.10460 5.43926 5.49481 5.58349 5.61443 5.86294 6.02293 6.18631 6.76386 6.91522 7.14447 7.79914 9.19220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.353 6.353 4 C 0.511 3.489 5 O -0.505 6.505 6 C -0.091 4.091 7 C -0.111 4.111 8 C -0.095 4.095 9 C -0.169 4.169 10 C 0.140 3.860 11 O -0.302 6.302 12 C 0.191 3.809 13 H 0.049 0.951 14 C -0.566 4.566 15 H 0.080 0.920 16 C 0.092 3.908 17 N -0.859 5.859 18 Si 0.903 3.097 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.274 1.274 22 C -0.003 4.003 23 N -0.272 5.272 24 C -0.043 4.043 25 C -0.040 4.040 26 C -0.047 4.047 27 C -0.104 4.104 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.140 0.860 36 H 0.279 0.721 37 H 0.160 0.840 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.099 0.901 41 H 0.131 0.869 42 H 0.113 0.887 43 H 0.109 0.891 44 H 0.117 0.883 45 H 0.117 0.883 46 H 0.110 0.890 47 H 0.116 0.884 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.180 2.427 16.168 16.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.270 6.270 4 C 0.356 3.644 5 O -0.394 6.394 6 C -0.092 4.092 7 C -0.129 4.129 8 C -0.113 4.113 9 C -0.188 4.188 10 C 0.094 3.906 11 O -0.216 6.216 12 C 0.137 3.863 13 H 0.066 0.934 14 C -0.603 4.603 15 H 0.098 0.902 16 C -0.118 4.118 17 N -0.492 5.492 18 Si 0.729 3.271 19 H -0.190 1.190 20 H -0.200 1.200 21 H -0.199 1.199 22 C -0.121 4.121 23 N 0.069 4.931 24 C -0.184 4.184 25 C -0.182 4.182 26 C -0.189 4.189 27 C -0.123 4.123 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.152 0.848 34 H 0.148 0.852 35 H 0.157 0.843 36 H 0.090 0.910 37 H 0.177 0.823 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.118 0.882 41 H 0.149 0.851 42 H 0.132 0.868 43 H 0.128 0.872 44 H 0.135 0.865 45 H 0.136 0.864 46 H 0.129 0.871 47 H 0.134 0.866 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.689 1.834 16.082 16.274 hybrid contribution 0.095 0.299 -1.192 1.233 sum 1.785 2.133 14.890 15.147 Atomic orbital electron populations 1.21819 0.92321 1.03228 1.03667 1.23082 0.95514 0.79691 1.02822 1.86539 1.23651 1.32692 1.84122 1.21175 0.80665 0.89860 0.72743 1.90845 1.60416 1.42514 1.45631 1.18744 0.93115 0.89894 1.07463 1.21284 1.00083 0.91543 1.00034 1.20976 0.94756 0.96986 0.98551 1.21659 0.93857 0.99419 1.03832 1.18659 0.84347 0.92579 0.95047 1.86333 1.16541 1.32732 1.85970 1.20384 0.88088 0.80044 0.97748 0.93397 1.21244 1.29342 1.14541 0.95150 0.90216 1.25038 0.93187 0.93556 1.00033 1.69611 1.24941 1.18512 1.36179 0.86281 0.78885 0.79930 0.81994 1.18972 1.19998 1.19874 1.24897 1.06461 1.05138 0.75596 1.46390 1.13892 1.15591 1.17230 1.24358 1.08366 0.79204 1.06470 1.24002 0.84408 1.08310 1.01504 1.24064 0.96158 0.98900 0.99773 1.20431 0.93257 0.96094 1.02541 0.90014 0.91384 0.91315 0.91000 0.91077 0.84765 0.85213 0.84277 0.91041 0.82256 0.85887 0.85968 0.88240 0.85076 0.86840 0.87206 0.86469 0.86448 0.87110 0.86584 0.84248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.14 10.29 37.16 0.38 0.52 16 2 C 0.06 0.08 6.20 37.16 0.23 0.31 16 3 O -0.35 -1.16 9.47 -40.50 -0.38 -1.55 16 4 C 0.51 2.41 7.90 34.62 0.27 2.68 16 5 O -0.51 -3.59 16.14 -19.25 -0.31 -3.90 16 6 C -0.09 -0.31 5.87 -105.00 -0.62 -0.93 16 7 C -0.11 -0.20 9.61 -39.16 -0.38 -0.58 16 8 C -0.09 -0.08 10.03 -39.66 -0.40 -0.48 16 9 C -0.17 -0.24 8.77 -39.35 -0.35 -0.58 16 10 C 0.14 0.33 5.90 -39.28 -0.23 0.10 16 11 O -0.30 -0.55 6.15 -19.44 -0.12 -0.67 16 12 C 0.19 0.03 1.35 -27.88 -0.04 -0.01 16 13 H 0.05 -0.12 3.93 -51.93 -0.20 -0.32 16 14 C -0.57 -3.40 8.26 -34.44 -0.28 -3.68 16 15 H 0.08 0.56 7.81 -52.49 -0.41 0.15 16 16 C 0.09 0.77 5.24 -17.82 -0.09 0.67 16 17 N -0.86 -7.17 10.93 55.43 0.61 -6.56 16 18 Si 0.90 7.88 29.54 -169.99 -5.02 2.86 16 19 H -0.27 -2.43 7.11 56.52 0.40 -2.03 16 20 H -0.27 -2.51 7.11 56.52 0.40 -2.11 16 21 H -0.27 -2.87 7.11 56.52 0.40 -2.47 16 22 C 0.00 0.01 3.55 -3.82 -0.01 0.00 16 23 N -0.27 2.68 0.05 -395.62 -0.02 2.66 16 24 C -0.04 0.36 7.13 60.07 0.43 0.79 16 25 C -0.04 0.50 8.00 60.06 0.48 0.98 16 26 C -0.05 0.54 7.56 60.07 0.45 0.99 16 27 C -0.10 -0.35 9.53 -39.01 -0.37 -0.72 16 28 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 29 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 30 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 31 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 32 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 33 H 0.13 0.08 7.61 -52.49 -0.40 -0.32 16 34 H 0.13 -0.17 8.06 -52.49 -0.42 -0.59 16 35 H 0.14 0.08 5.72 -52.49 -0.30 -0.22 16 36 H 0.28 2.54 8.31 -40.82 -0.34 2.20 16 37 H 0.16 -0.19 6.08 -51.93 -0.32 -0.50 16 38 H 0.12 -0.67 8.11 -51.93 -0.42 -1.09 16 39 H 0.12 -0.81 7.96 -51.93 -0.41 -1.22 16 40 H 0.10 -1.12 8.01 -51.93 -0.42 -1.53 16 41 H 0.13 -0.77 4.92 -51.93 -0.26 -1.03 16 42 H 0.11 -1.50 8.12 -51.93 -0.42 -1.92 16 43 H 0.11 -1.56 8.08 -51.93 -0.42 -1.98 16 44 H 0.12 -1.37 8.14 -51.93 -0.42 -1.79 16 45 H 0.12 -1.13 5.91 -51.93 -0.31 -1.44 16 46 H 0.11 -1.49 8.14 -51.93 -0.42 -1.92 16 47 H 0.12 -1.45 8.14 -51.93 -0.42 -1.87 16 48 H 0.14 0.53 7.65 -52.49 -0.40 0.13 16 LS Contribution 380.20 15.07 5.73 5.73 Total: 0.00 -17.78 380.20 -7.66 -25.44 By element: Atomic # 1 Polarization: -16.47 SS G_CDS: -7.62 Total: -24.10 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -0.52 Total: 0.08 kcal Atomic # 7 Polarization: -4.48 SS G_CDS: 0.59 Total: -3.90 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -0.81 Total: -6.11 kcal Atomic # 14 Polarization: 7.88 SS G_CDS: -5.02 Total: 2.86 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -17.78 -7.66 -25.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226060778.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.216 kcal (2) G-P(sol) polarization free energy of solvation -17.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds