Wall clock time and date at job start Sat Apr 11 2020 00:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47396 * 2 1 4 4 C 1.46496 * 120.00415 * 270.00356 * 3 2 1 5 5 C 1.50704 * 109.47269 * 269.99927 * 4 3 2 6 6 H 1.08002 * 119.99371 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00054 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99787 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00022 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47506 * 90.00169 * 9 7 5 11 11 H 1.48504 * 109.47078 * 209.99890 * 9 7 5 12 12 H 1.48494 * 109.47310 * 329.99903 * 9 7 5 13 13 C 1.34783 * 119.99882 * 89.99873 * 3 2 1 14 14 O 1.21277 * 120.00367 * 180.02562 * 13 3 2 15 15 C 1.50707 * 119.99715 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.46656 * 179.97438 * 15 13 3 17 17 C 1.46906 * 110.99573 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.46958 * 299.99941 * 17 16 15 19 19 C 1.52994 * 109.46987 * 59.99934 * 17 16 15 20 20 C 1.50699 * 109.46990 * 180.02562 * 17 16 15 21 21 C 1.38246 * 119.97538 * 359.72790 * 20 17 16 22 22 C 1.38193 * 120.02523 * 179.72847 * 21 20 17 23 23 C 1.38458 * 119.97553 * 0.56587 * 22 21 20 24 24 F 1.35102 * 120.02872 * 179.68743 * 23 22 21 25 25 C 1.38460 * 119.94702 * 359.70511 * 23 22 21 26 26 C 1.38198 * 119.97307 * 0.02562 * 25 23 22 27 27 H 1.08997 * 109.47178 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47084 * 299.99423 * 1 2 3 29 29 H 1.08994 * 109.47472 * 59.99793 * 1 2 3 30 30 H 1.09006 * 109.47093 * 240.00262 * 2 1 3 31 31 H 1.09005 * 109.47340 * 120.00709 * 2 1 3 32 32 H 1.09005 * 109.46930 * 29.99818 * 4 3 2 33 33 H 1.09001 * 109.47177 * 149.99496 * 4 3 2 34 34 H 0.97007 * 120.00196 * 179.97438 * 8 7 5 35 35 H 1.08990 * 109.47142 * 59.99633 * 15 13 3 36 36 H 1.09004 * 109.46726 * 299.99530 * 15 13 3 37 37 H 1.00896 * 111.00219 * 303.95295 * 16 15 13 38 38 H 1.08997 * 109.47598 * 60.00269 * 18 17 16 39 39 H 1.09002 * 109.46781 * 180.02562 * 18 17 16 40 40 H 1.09000 * 109.47321 * 300.00119 * 18 17 16 41 41 H 1.09002 * 109.47331 * 60.00115 * 19 17 16 42 42 H 1.09002 * 109.47018 * 179.97438 * 19 17 16 43 43 H 1.08999 * 109.47836 * 299.99828 * 19 17 16 44 44 H 1.08001 * 119.98316 * 359.97438 * 21 20 17 45 45 H 1.08006 * 120.01403 * 180.25484 * 22 21 20 46 46 H 1.08000 * 120.01196 * 179.97438 * 25 23 22 47 47 H 1.08004 * 119.98599 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 3.6858 1.8350 -1.7038 6 1 4.3428 1.2308 -1.0958 7 6 4.1491 2.3897 -2.8779 8 7 5.3910 2.1826 -3.2578 9 14 3.0123 3.4341 -3.9297 10 1 3.1146 4.8547 -3.5090 11 1 3.4058 3.3109 -5.3564 12 1 1.6129 2.9673 -3.7601 13 6 2.2430 2.0165 1.1673 14 8 2.6469 3.1600 1.1674 15 6 1.9923 1.3058 2.4724 16 7 2.3110 2.2056 3.5889 17 6 2.0774 1.5453 4.8803 18 6 0.6071 1.1354 4.9848 19 6 2.9623 0.3016 4.9845 20 6 2.4138 2.4971 5.9992 21 6 2.8698 3.7697 5.7099 22 6 3.1733 4.6452 6.7352 23 6 3.0316 4.2435 8.0526 24 9 3.3340 5.0964 9.0558 25 6 2.5802 2.9668 8.3412 26 6 2.2720 2.0948 7.3142 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5140 0.8899 32 1 1.5816 1.6878 -2.0283 33 1 2.0955 3.1410 -1.1382 34 1 5.7169 2.5725 -4.0841 35 1 2.6227 0.4186 2.5299 36 1 0.9444 1.0114 2.5302 37 1 3.2592 2.5437 3.5216 38 1 0.3633 0.4471 4.1756 39 1 0.4337 0.6458 5.9432 40 1 -0.0233 2.0214 4.9105 41 1 4.0098 0.5937 4.9100 42 1 2.7894 -0.1881 5.9428 43 1 2.7186 -0.3867 4.1752 44 1 2.9851 4.0811 4.6822 45 1 3.5256 5.6408 6.5089 46 1 2.4697 2.6522 9.3684 47 1 1.9203 1.0988 7.5391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103482738.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:48:50 Heat of formation + Delta-G solvation = -47.332177 kcal Electronic energy + Delta-G solvation = -27424.481290 eV Core-core repulsion = 23521.999919 eV Total energy + Delta-G solvation = -3902.481370 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -49.03418 -40.18851 -39.07940 -37.00705 -35.36381 -32.81010 -32.08745 -31.21668 -30.33879 -29.32065 -28.20204 -27.52875 -26.03415 -23.17002 -22.98961 -22.95683 -21.87958 -19.60050 -18.66049 -17.85240 -17.05303 -16.90424 -16.44080 -15.99658 -15.73594 -15.41980 -15.29015 -14.64380 -14.50955 -14.33553 -13.93635 -13.75009 -13.50968 -13.45034 -13.30291 -13.08031 -13.04385 -12.58274 -12.46076 -12.30307 -12.19077 -11.98899 -11.92156 -11.61271 -11.43778 -11.31720 -11.09776 -10.97682 -10.88191 -10.73654 -10.50105 -10.16012 -9.55184 -9.26339 -9.04814 -8.74259 -8.59685 -8.38214 -7.72082 -6.09769 -4.08441 0.96354 1.08229 3.28724 3.34657 3.35256 3.36964 3.41058 3.58100 4.08919 4.18965 4.38677 4.39181 4.58889 4.71181 4.83410 4.87817 5.03941 5.12135 5.17864 5.24340 5.25077 5.29423 5.40700 5.42789 5.49649 5.53930 5.58564 5.63199 5.73255 5.76077 5.85919 5.91006 5.94819 5.98671 6.07103 6.12816 6.15682 6.32325 6.37732 6.67548 6.72752 6.89846 7.00282 7.31319 7.35897 7.60774 8.26205 8.46168 8.91952 9.00138 9.50917 11.03641 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017121 B = 0.002859 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.035870 B = 9790.883445 C =10779.263327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.594 5.594 4 C 0.217 3.783 5 C -0.528 4.528 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.507 3.493 14 O -0.528 6.528 15 C 0.037 3.963 16 N -0.662 5.662 17 C 0.151 3.849 18 C -0.138 4.138 19 C -0.182 4.182 20 C -0.079 4.079 21 C -0.072 4.072 22 C -0.152 4.152 23 C 0.090 3.910 24 F -0.144 7.144 25 C -0.157 4.157 26 C -0.086 4.086 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.029 0.971 33 H 0.036 0.964 34 H 0.264 0.736 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.354 0.646 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.149 0.851 45 H 0.135 0.865 46 H 0.132 0.868 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.917 -5.297 20.564 23.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.327 5.327 4 C 0.097 3.903 5 C -0.566 4.566 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.293 3.707 14 O -0.404 6.404 15 C -0.095 4.095 16 N -0.295 5.295 17 C 0.060 3.940 18 C -0.195 4.195 19 C -0.241 4.241 20 C -0.079 4.079 21 C -0.090 4.090 22 C -0.171 4.171 23 C 0.071 3.929 24 F -0.123 7.123 25 C -0.176 4.176 26 C -0.105 4.105 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.117 0.883 37 H 0.175 0.825 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.167 0.833 45 H 0.153 0.847 46 H 0.150 0.850 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.162 -4.286 20.407 23.196 hybrid contribution 0.413 -0.002 -0.461 0.619 sum -9.749 -4.289 19.946 22.611 Atomic orbital electron populations 1.22237 0.96760 1.01535 1.02315 1.21432 0.93409 0.83951 1.02987 1.47922 1.64447 1.13316 1.07000 1.19629 0.97207 0.93416 0.80092 1.21324 0.95360 1.32865 1.07084 0.90875 1.24855 0.94990 0.95804 0.97372 1.69897 1.15175 1.45045 1.23566 0.86846 0.81462 0.81631 0.79722 1.19890 1.21116 1.19073 1.20210 0.78573 0.87046 0.84874 1.90669 1.44999 1.17822 1.86957 1.21991 1.02681 0.94805 0.90041 1.60389 1.32636 1.37051 0.99421 1.19740 0.95958 0.90695 0.87653 1.21918 0.94026 1.01886 1.01672 1.22605 1.00396 0.98365 1.02694 1.19782 0.99526 0.94972 0.93647 1.21149 0.95357 0.92275 1.00212 1.21234 1.03355 1.01596 0.90924 1.17776 1.01716 0.88564 0.84884 1.91487 1.90995 1.69943 1.59858 1.21041 1.03213 0.92745 1.00565 1.20769 0.98972 0.99403 0.91345 0.92021 0.92929 0.92187 0.89760 0.91608 0.95338 0.94587 0.92572 0.92265 0.88304 0.82522 0.91977 0.92098 0.91404 0.92128 0.91739 0.91601 0.83342 0.84722 0.84995 0.85217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 10.24 37.16 0.38 -1.64 16 2 C 0.11 1.56 5.93 -4.05 -0.02 1.54 16 3 N -0.59 -11.73 2.46 -175.05 -0.43 -12.16 16 4 C 0.22 5.23 4.23 -5.19 -0.02 5.20 16 5 C -0.53 -14.97 9.94 -34.44 -0.34 -15.31 16 6 H 0.07 2.27 8.06 -52.49 -0.42 1.85 16 7 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.90 -27.57 13.96 55.43 0.77 -26.79 16 9 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 10 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 13 C 0.51 9.84 7.71 -10.98 -0.08 9.75 16 14 O -0.53 -12.56 15.78 5.56 0.09 -12.47 16 15 C 0.04 0.50 3.93 -4.97 -0.02 0.48 16 16 N -0.66 -8.56 4.73 -102.39 -0.48 -9.05 16 17 C 0.15 1.49 0.79 -132.75 -0.11 1.39 16 18 C -0.14 -1.19 8.05 37.16 0.30 -0.89 16 19 C -0.18 -1.60 8.04 37.15 0.30 -1.30 16 20 C -0.08 -0.80 4.77 -104.62 -0.50 -1.30 16 21 C -0.07 -0.81 9.14 -39.59 -0.36 -1.17 16 22 C -0.15 -1.65 10.03 -39.52 -0.40 -2.05 16 23 C 0.09 0.97 7.30 -39.42 -0.29 0.68 16 24 F -0.14 -1.66 17.27 2.25 0.04 -1.62 16 25 C -0.16 -1.44 10.03 -39.51 -0.40 -1.84 16 26 C -0.09 -0.75 8.71 -39.60 -0.34 -1.10 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.59 7.22 -51.93 -0.38 0.21 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 31 H 0.07 0.80 6.44 -51.93 -0.33 0.46 16 32 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 33 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.06 0.73 5.56 -51.93 -0.29 0.44 16 36 H 0.10 1.15 5.35 -51.93 -0.28 0.88 16 37 H 0.35 4.99 7.24 -39.29 -0.28 4.71 16 38 H 0.06 0.50 6.40 -51.93 -0.33 0.17 16 39 H 0.06 0.42 7.39 -51.93 -0.38 0.04 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.46 7.39 -51.93 -0.38 0.08 16 43 H 0.07 0.57 6.40 -51.93 -0.33 0.23 16 44 H 0.15 1.81 6.39 -52.49 -0.34 1.48 16 45 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 46 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 47 H 0.13 0.84 7.10 -52.48 -0.37 0.47 16 LS Contribution 376.72 15.07 5.68 5.68 Total: -1.00 -33.41 376.72 -7.98 -41.39 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.97 Total: 3.76 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -2.00 Total: -5.57 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -0.14 Total: -48.00 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.09 Total: -12.47 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.41 -7.98 -41.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103482738.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.942 kcal (2) G-P(sol) polarization free energy of solvation -33.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds