Wall clock time and date at job start Sat Apr 11 2020 00:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47157 * 2 1 4 4 N 1.46503 * 109.46733 * 180.02562 * 3 2 1 5 5 C 1.36940 * 119.99352 * 274.38160 * 4 3 2 6 6 H 1.07995 * 120.00173 * 337.75704 * 5 4 3 7 7 C 1.38808 * 119.99687 * 157.76525 * 5 4 3 8 8 N 1.31621 * 120.00290 * 7.77658 * 7 5 4 9 9 Si 1.86801 * 120.00210 * 187.77446 * 7 5 4 10 10 H 1.48506 * 109.46735 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46939 * 119.99609 * 9 7 5 12 12 H 1.48496 * 109.47555 * 240.00073 * 9 7 5 13 13 C 1.46497 * 120.00142 * 94.38292 * 4 3 2 14 14 C 1.50702 * 109.47067 * 269.99587 * 13 4 3 15 15 O 1.21281 * 119.99906 * 0.02562 * 14 13 4 16 16 N 1.34780 * 119.99832 * 180.02562 * 14 13 4 17 17 C 1.46495 * 120.00003 * 0.02562 * 16 14 13 18 18 C 1.52998 * 109.46985 * 269.99935 * 17 16 14 19 19 C 1.46503 * 119.99820 * 180.02562 * 16 14 13 20 20 C 1.50700 * 109.47037 * 89.99915 * 19 16 14 21 21 C 1.38268 * 119.98492 * 270.25241 * 20 19 16 22 22 C 1.38230 * 120.04769 * 180.25653 * 21 20 19 23 23 C 1.38221 * 120.02439 * 359.49178 * 22 21 20 24 24 C 1.38437 * 119.97453 * 0.25348 * 23 22 21 25 25 F 1.35094 * 120.02453 * 179.97438 * 24 23 22 26 26 C 1.38172 * 119.98462 * 90.00211 * 20 19 16 27 27 H 1.08995 * 109.47247 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47020 * 300.00181 * 1 2 3 29 29 H 1.08993 * 109.47124 * 60.00184 * 1 2 3 30 30 H 1.09001 * 109.46631 * 239.99450 * 2 1 3 31 31 H 1.09004 * 109.46681 * 119.99819 * 2 1 3 32 32 H 1.08989 * 109.47232 * 59.99900 * 3 2 1 33 33 H 1.09002 * 109.46750 * 299.99811 * 3 2 1 34 34 H 0.96998 * 120.00039 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47015 * 149.99684 * 13 4 3 36 36 H 1.08996 * 109.46971 * 29.99875 * 13 4 3 37 37 H 1.09002 * 109.47416 * 29.99774 * 17 16 14 38 38 H 1.08998 * 109.47171 * 150.00230 * 17 16 14 39 39 H 1.09006 * 109.47069 * 179.97438 * 18 17 16 40 40 H 1.08996 * 109.47302 * 300.00314 * 18 17 16 41 41 H 1.09006 * 109.47055 * 60.00454 * 18 17 16 42 42 H 1.09006 * 109.47000 * 330.00110 * 19 16 14 43 43 H 1.08998 * 109.47007 * 210.00065 * 19 16 14 44 44 H 1.08000 * 119.97773 * 0.02562 * 21 20 19 45 45 H 1.08000 * 119.98746 * 179.76630 * 22 21 20 46 46 H 1.07993 * 120.01153 * 180.23597 * 23 22 21 47 47 H 1.08001 * 120.01657 * 0.02562 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1902 1.3516 1.1816 6 1 3.7108 1.6357 2.1067 7 6 5.5008 0.8945 1.1909 8 7 6.1360 0.6942 0.0556 9 14 6.3632 0.5637 2.8145 10 1 5.4386 0.8659 3.9367 11 1 6.7692 -0.8633 2.8776 12 1 7.5674 1.4261 2.9202 13 6 4.2371 1.5395 -1.2659 14 6 4.4880 0.1561 -1.8085 15 8 4.0938 -0.8152 -1.1986 16 7 5.1506 -0.0016 -2.9715 17 6 5.6273 1.1717 -3.7079 18 6 4.5441 1.6362 -4.6835 19 6 5.3940 -1.3464 -3.4993 20 6 4.2471 -1.7522 -4.3886 21 6 3.1540 -2.4065 -3.8512 22 6 2.1036 -2.7841 -4.6667 23 6 2.1403 -2.4985 -6.0186 24 6 3.2319 -1.8388 -6.5568 25 9 3.2691 -1.5597 -7.8780 26 6 4.2861 -1.4657 -5.7398 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.6768 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 7.0517 0.3744 0.0621 35 1 5.1896 2.0418 -1.0970 36 1 3.6478 2.1100 -1.9837 37 1 5.8525 1.9745 -3.0059 38 1 6.5284 0.9109 -4.2629 39 1 4.8986 2.5095 -5.2311 40 1 4.3188 0.8334 -5.3855 41 1 3.6429 1.8971 -4.1285 42 1 5.4796 -2.0513 -2.6722 43 1 6.3192 -1.3485 -4.0757 44 1 3.1224 -2.6261 -2.7943 45 1 1.2519 -3.2984 -4.2466 46 1 1.3179 -2.7902 -6.6548 47 1 5.1384 -0.9515 -6.1586 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104675990.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:48:57 Heat of formation + Delta-G solvation = -30.303157 kcal Electronic energy + Delta-G solvation = -29066.109501 eV Core-core repulsion = 25164.366565 eV Total energy + Delta-G solvation = -3901.742937 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -48.83341 -39.47038 -38.17991 -35.91764 -34.66317 -32.87041 -32.03465 -30.57544 -30.45985 -29.50172 -27.52291 -25.47007 -25.28109 -22.80514 -22.57650 -22.11126 -21.31141 -20.01594 -18.40751 -17.23097 -16.71990 -16.32088 -16.04740 -15.67611 -15.49861 -15.34494 -14.88416 -14.40406 -14.12905 -13.76105 -13.59197 -13.32767 -13.15678 -13.04587 -12.82865 -12.65651 -12.34932 -12.18641 -12.04649 -11.65623 -11.52329 -11.39949 -11.10813 -11.08267 -10.96338 -10.89426 -10.76889 -10.65562 -10.50499 -10.19031 -9.98264 -9.81976 -9.54163 -8.91814 -8.73150 -8.56849 -8.14148 -7.74426 -6.76335 -5.78813 -3.17294 1.26901 1.30821 3.39247 3.47861 3.48381 3.60125 4.14059 4.23075 4.34976 4.55962 4.82190 4.88946 5.16212 5.35675 5.40842 5.41039 5.44934 5.55240 5.57323 5.68095 5.78822 5.84185 5.88382 5.93573 6.06704 6.11932 6.17578 6.19287 6.22127 6.26336 6.29813 6.38837 6.47197 6.56094 6.58698 6.63037 6.66417 6.75590 6.89009 7.03134 7.16201 7.34382 7.41993 7.54535 7.76957 8.36138 8.57888 9.21714 9.73778 9.89770 10.31252 11.28162 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014341 B = 0.004515 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.915842 B = 6200.018308 C = 7012.557987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.152 3.848 4 N -0.580 5.580 5 C -0.237 4.237 6 H 0.073 0.927 7 C 0.007 3.993 8 N -0.910 5.910 9 Si 0.908 3.092 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.293 1.293 13 C 0.168 3.832 14 C 0.540 3.460 15 O -0.533 6.533 16 N -0.621 5.621 17 C 0.117 3.883 18 C -0.176 4.176 19 C 0.157 3.843 20 C -0.060 4.060 21 C -0.103 4.103 22 C -0.095 4.095 23 C -0.160 4.160 24 C 0.086 3.914 25 F -0.146 7.146 26 C -0.143 4.143 27 H 0.040 0.960 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.040 0.960 33 H 0.033 0.967 34 H 0.252 0.748 35 H 0.118 0.882 36 H 0.023 0.977 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.137 0.863 45 H 0.128 0.872 46 H 0.128 0.872 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.248 -1.835 -12.246 13.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C 0.025 3.975 4 N -0.299 5.299 5 C -0.366 4.366 6 H 0.091 0.909 7 C -0.189 4.189 8 N -0.557 5.557 9 Si 0.738 3.262 10 H -0.206 1.206 11 H -0.218 1.218 12 H -0.220 1.220 13 C 0.038 3.962 14 C 0.329 3.671 15 O -0.407 6.407 16 N -0.358 5.358 17 C -0.007 4.007 18 C -0.234 4.234 19 C 0.033 3.967 20 C -0.062 4.062 21 C -0.122 4.122 22 C -0.113 4.113 23 C -0.180 4.180 24 C 0.067 3.933 25 F -0.125 7.125 26 C -0.163 4.163 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.135 0.865 36 H 0.041 0.959 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.107 0.893 43 H 0.089 0.911 44 H 0.155 0.845 45 H 0.146 0.854 46 H 0.146 0.854 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.303 -2.339 -11.861 12.832 hybrid contribution 0.611 -0.432 0.411 0.854 sum -3.692 -2.771 -11.450 12.345 Atomic orbital electron populations 1.21785 0.98313 1.00133 1.00363 1.22146 0.92294 1.00435 1.03052 1.20905 0.84459 0.94012 0.98117 1.43822 0.99620 1.84080 1.02386 1.19274 0.95239 1.35898 0.86194 0.90905 1.24885 0.97837 0.99295 0.96858 1.69662 1.11432 1.50970 1.23664 0.86130 0.79001 0.77702 0.83319 1.20580 1.21796 1.22044 1.20794 0.98328 0.91333 0.85742 1.22061 0.74189 0.94238 0.76567 1.90453 1.51519 1.42052 1.56716 1.48214 1.60300 1.03702 1.23573 1.21319 0.95489 0.89250 0.94626 1.22382 1.00274 1.00905 0.99880 1.20119 0.93045 0.87446 0.96120 1.20401 0.97391 0.95475 0.92962 1.21384 0.92756 0.97106 1.00924 1.21028 0.98750 0.99094 0.92470 1.21061 0.98100 1.02245 0.96553 1.17662 0.96666 1.01374 0.77598 1.91465 1.96777 1.92053 1.32228 1.20987 0.98716 1.02804 0.93776 0.94035 0.93696 0.93878 0.91576 0.92337 0.94136 0.94836 0.93698 0.86493 0.95894 0.89914 0.92052 0.92495 0.92565 0.92539 0.89274 0.91135 0.84522 0.85374 0.85368 0.85136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.91 37.16 0.37 -2.02 16 2 C -0.14 -2.84 5.68 -26.73 -0.15 -2.99 16 3 C 0.15 3.19 5.72 -4.04 -0.02 3.17 16 4 N -0.58 -14.13 2.07 -174.61 -0.36 -14.49 16 5 C -0.24 -6.33 9.70 -15.06 -0.15 -6.48 16 6 H 0.07 1.93 7.84 -52.49 -0.41 1.52 16 7 C 0.01 0.20 5.41 -17.43 -0.09 0.11 16 8 N -0.91 -24.37 8.21 55.49 0.46 -23.92 16 9 Si 0.91 21.88 29.56 -169.99 -5.02 16.85 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 C 0.17 3.79 4.02 -5.19 -0.02 3.77 16 14 C 0.54 11.94 5.63 -10.98 -0.06 11.88 16 15 O -0.53 -13.47 12.97 5.56 0.07 -13.40 16 16 N -0.62 -11.19 2.46 -175.06 -0.43 -11.62 16 17 C 0.12 1.74 5.98 -4.05 -0.02 1.72 16 18 C -0.18 -2.32 10.24 37.16 0.38 -1.94 16 19 C 0.16 2.53 5.57 -5.19 -0.03 2.50 16 20 C -0.06 -0.90 5.39 -104.64 -0.56 -1.46 16 21 C -0.10 -1.56 9.70 -39.57 -0.38 -1.95 16 22 C -0.10 -1.23 10.04 -39.59 -0.40 -1.63 16 23 C -0.16 -1.99 10.03 -39.51 -0.40 -2.39 16 24 C 0.09 1.15 7.30 -39.42 -0.29 0.86 16 25 F -0.15 -1.97 17.27 2.25 0.04 -1.93 16 26 C -0.14 -1.92 7.52 -39.51 -0.30 -2.21 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 1.48 6.38 -51.93 -0.33 1.15 16 31 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.04 0.83 8.07 -51.94 -0.42 0.41 16 33 H 0.03 0.65 7.84 -51.93 -0.41 0.24 16 34 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 35 H 0.12 2.86 5.50 -51.93 -0.29 2.57 16 36 H 0.02 0.47 6.91 -51.93 -0.36 0.12 16 37 H 0.08 1.32 6.44 -51.93 -0.33 0.99 16 38 H 0.06 0.79 7.89 -51.93 -0.41 0.38 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.74 5.26 -51.93 -0.27 0.47 16 41 H 0.06 0.82 7.22 -51.93 -0.37 0.45 16 42 H 0.09 1.65 7.37 -51.93 -0.38 1.27 16 43 H 0.07 0.97 7.84 -51.93 -0.41 0.56 16 44 H 0.14 2.33 7.56 -52.49 -0.40 1.94 16 45 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 46 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 47 H 0.13 1.55 7.73 -52.49 -0.41 1.14 16 LS Contribution 376.66 15.07 5.68 5.68 Total: -1.00 -29.42 376.66 -8.99 -38.41 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -7.29 Total: 3.48 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -2.13 Total: 0.94 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -0.34 Total: -50.03 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.07 Total: -13.40 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.42 -8.99 -38.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104675990.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.111 kcal (2) G-P(sol) polarization free energy of solvation -29.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds