Wall clock time and date at job start Sat Apr 11 2020 00:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47157 * 2 1 4 4 N 1.46503 * 109.46733 * 180.02562 * 3 2 1 5 5 C 1.36940 * 119.99352 * 274.38160 * 4 3 2 6 6 H 1.07995 * 120.00173 * 337.75704 * 5 4 3 7 7 C 1.38808 * 119.99687 * 157.76525 * 5 4 3 8 8 N 1.31621 * 120.00290 * 7.77658 * 7 5 4 9 9 Si 1.86801 * 120.00210 * 187.77446 * 7 5 4 10 10 H 1.48506 * 109.46735 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46939 * 119.99609 * 9 7 5 12 12 H 1.48496 * 109.47555 * 240.00073 * 9 7 5 13 13 C 1.46497 * 120.00142 * 94.38292 * 4 3 2 14 14 C 1.50702 * 109.47067 * 269.99587 * 13 4 3 15 15 O 1.21281 * 119.99906 * 0.02562 * 14 13 4 16 16 N 1.34780 * 119.99832 * 180.02562 * 14 13 4 17 17 C 1.46495 * 120.00003 * 0.02562 * 16 14 13 18 18 C 1.52998 * 109.46985 * 269.99935 * 17 16 14 19 19 C 1.46503 * 119.99820 * 180.02562 * 16 14 13 20 20 C 1.50700 * 109.47037 * 89.99915 * 19 16 14 21 21 C 1.38268 * 119.98492 * 270.25241 * 20 19 16 22 22 C 1.38230 * 120.04769 * 180.25653 * 21 20 19 23 23 C 1.38221 * 120.02439 * 359.49178 * 22 21 20 24 24 C 1.38437 * 119.97453 * 0.25348 * 23 22 21 25 25 F 1.35094 * 120.02453 * 179.97438 * 24 23 22 26 26 C 1.38172 * 119.98462 * 90.00211 * 20 19 16 27 27 H 1.08995 * 109.47247 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47020 * 300.00181 * 1 2 3 29 29 H 1.08993 * 109.47124 * 60.00184 * 1 2 3 30 30 H 1.09001 * 109.46631 * 239.99450 * 2 1 3 31 31 H 1.09004 * 109.46681 * 119.99819 * 2 1 3 32 32 H 1.08989 * 109.47232 * 59.99900 * 3 2 1 33 33 H 1.09002 * 109.46750 * 299.99811 * 3 2 1 34 34 H 0.96998 * 120.00039 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47015 * 149.99684 * 13 4 3 36 36 H 1.08996 * 109.46971 * 29.99875 * 13 4 3 37 37 H 1.09002 * 109.47416 * 29.99774 * 17 16 14 38 38 H 1.08998 * 109.47171 * 150.00230 * 17 16 14 39 39 H 1.09006 * 109.47069 * 179.97438 * 18 17 16 40 40 H 1.08996 * 109.47302 * 300.00314 * 18 17 16 41 41 H 1.09006 * 109.47055 * 60.00454 * 18 17 16 42 42 H 1.09006 * 109.47000 * 330.00110 * 19 16 14 43 43 H 1.08998 * 109.47007 * 210.00065 * 19 16 14 44 44 H 1.08000 * 119.97773 * 0.02562 * 21 20 19 45 45 H 1.08000 * 119.98746 * 179.76630 * 22 21 20 46 46 H 1.07993 * 120.01153 * 180.23597 * 23 22 21 47 47 H 1.08001 * 120.01657 * 0.02562 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1902 1.3516 1.1816 6 1 3.7108 1.6357 2.1067 7 6 5.5008 0.8945 1.1909 8 7 6.1360 0.6942 0.0556 9 14 6.3632 0.5637 2.8145 10 1 5.4386 0.8659 3.9367 11 1 6.7692 -0.8633 2.8776 12 1 7.5674 1.4261 2.9202 13 6 4.2371 1.5395 -1.2659 14 6 4.4880 0.1561 -1.8085 15 8 4.0938 -0.8152 -1.1986 16 7 5.1506 -0.0016 -2.9715 17 6 5.6273 1.1717 -3.7079 18 6 4.5441 1.6362 -4.6835 19 6 5.3940 -1.3464 -3.4993 20 6 4.2471 -1.7522 -4.3886 21 6 3.1540 -2.4065 -3.8512 22 6 2.1036 -2.7841 -4.6667 23 6 2.1403 -2.4985 -6.0186 24 6 3.2319 -1.8388 -6.5568 25 9 3.2691 -1.5597 -7.8780 26 6 4.2861 -1.4657 -5.7398 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.6768 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 7.0517 0.3744 0.0621 35 1 5.1896 2.0418 -1.0970 36 1 3.6478 2.1100 -1.9837 37 1 5.8525 1.9745 -3.0059 38 1 6.5284 0.9109 -4.2629 39 1 4.8986 2.5095 -5.2311 40 1 4.3188 0.8334 -5.3855 41 1 3.6429 1.8971 -4.1285 42 1 5.4796 -2.0513 -2.6722 43 1 6.3192 -1.3485 -4.0757 44 1 3.1224 -2.6261 -2.7943 45 1 1.2519 -3.2984 -4.2466 46 1 1.3179 -2.7902 -6.6548 47 1 5.1384 -0.9515 -6.1586 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104675990.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:48:55 Heat of formation + Delta-G solvation = -43.743224 kcal Electronic energy + Delta-G solvation = -29066.692307 eV Core-core repulsion = 25164.366565 eV Total energy + Delta-G solvation = -3902.325742 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 2.87 seconds Orbital eigenvalues (eV) -49.86777 -40.80775 -39.57699 -37.57308 -36.26506 -34.60652 -33.24076 -32.30202 -31.65397 -30.71183 -29.15947 -27.24740 -26.66247 -24.18287 -23.65594 -23.63146 -22.56253 -21.70208 -19.99986 -18.59042 -18.32228 -17.63907 -17.13348 -17.08571 -16.96062 -16.63117 -16.44797 -15.92810 -15.66388 -15.38121 -14.82428 -14.70065 -14.52343 -14.38109 -14.28920 -14.03150 -13.72845 -13.54390 -13.28099 -13.15902 -12.93427 -12.84976 -12.77075 -12.61187 -12.50365 -12.35602 -12.19650 -12.07307 -11.98490 -11.84430 -11.75910 -11.63639 -11.23132 -10.68697 -10.15009 -9.83489 -9.62564 -9.21006 -8.66443 -7.81655 -5.20027 0.18646 0.25161 1.43627 1.48617 1.54847 2.40114 2.46925 2.64821 2.90002 3.25904 3.39831 3.74027 3.77778 3.82079 4.09897 4.21383 4.26381 4.31091 4.32930 4.42453 4.47306 4.48889 4.66908 4.70332 4.76634 4.80307 4.81779 4.92290 4.94603 4.96991 5.02573 5.11202 5.13753 5.14431 5.23725 5.30159 5.38947 5.42607 5.49331 5.52857 5.63941 5.66049 5.78791 5.95907 6.10811 6.40684 6.97054 7.24289 7.87400 8.15574 8.34411 9.21704 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014341 B = 0.004515 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.915842 B = 6200.018308 C = 7012.557987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.149 3.851 4 N -0.597 5.597 5 C -0.249 4.249 6 H 0.068 0.932 7 C -0.036 4.036 8 N -0.916 5.916 9 Si 0.959 3.041 10 H -0.274 1.274 11 H -0.306 1.306 12 H -0.288 1.288 13 C 0.171 3.829 14 C 0.541 3.459 15 O -0.573 6.573 16 N -0.620 5.620 17 C 0.112 3.888 18 C -0.165 4.165 19 C 0.160 3.840 20 C -0.069 4.069 21 C -0.122 4.122 22 C -0.093 4.093 23 C -0.152 4.152 24 C 0.081 3.919 25 F -0.145 7.145 26 C -0.137 4.137 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.042 0.958 31 H 0.022 0.978 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.244 0.756 35 H 0.097 0.903 36 H 0.043 0.957 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.038 0.962 42 H 0.055 0.945 43 H 0.098 0.902 44 H 0.107 0.893 45 H 0.149 0.851 46 H 0.156 0.844 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.204 -1.379 -14.392 15.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.023 3.977 4 N -0.317 5.317 5 C -0.378 4.378 6 H 0.085 0.915 7 C -0.231 4.231 8 N -0.563 5.563 9 Si 0.789 3.211 10 H -0.199 1.199 11 H -0.234 1.234 12 H -0.215 1.215 13 C 0.042 3.958 14 C 0.330 3.670 15 O -0.451 6.451 16 N -0.355 5.355 17 C -0.011 4.011 18 C -0.223 4.223 19 C 0.036 3.964 20 C -0.071 4.071 21 C -0.141 4.141 22 C -0.111 4.111 23 C -0.171 4.171 24 C 0.062 3.938 25 F -0.123 7.123 26 C -0.156 4.156 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.041 0.959 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.114 0.886 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.078 0.922 41 H 0.057 0.943 42 H 0.074 0.926 43 H 0.117 0.883 44 H 0.125 0.875 45 H 0.167 0.833 46 H 0.174 0.826 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.258 -1.857 -14.051 15.117 hybrid contribution 0.888 -0.574 1.000 1.455 sum -4.370 -2.431 -13.051 13.976 Atomic orbital electron populations 1.21676 0.94599 1.01358 1.01856 1.21935 0.95422 0.99217 1.00110 1.21037 0.82877 0.94542 0.99203 1.44012 1.00986 1.84409 1.02289 1.19424 0.95570 1.35812 0.87031 0.91463 1.25455 0.98629 0.99857 0.99147 1.69826 1.10896 1.51239 1.24388 0.85326 0.78303 0.76396 0.81058 1.19916 1.23416 1.21481 1.20698 0.97533 0.91923 0.85688 1.21818 0.74343 0.93378 0.77442 1.90437 1.53321 1.42952 1.58365 1.48106 1.59020 1.05527 1.22826 1.21530 0.97249 0.87699 0.94610 1.22273 0.98779 1.02036 0.99243 1.20122 0.95107 0.85623 0.95527 1.20170 0.96839 0.96578 0.93487 1.21287 0.94248 0.98596 0.99925 1.21206 0.98542 0.98675 0.92629 1.21348 0.98474 1.00906 0.96374 1.17771 0.96902 1.01435 0.77659 1.91475 1.96779 1.92040 1.32044 1.21043 0.99402 1.02363 0.92812 0.93007 0.92389 0.92105 0.93928 0.95881 0.93673 0.92851 0.94609 0.88561 0.93924 0.91328 0.89350 0.89761 0.92228 0.94276 0.92646 0.88342 0.87506 0.83328 0.82640 0.83322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.20 9.91 71.98 0.71 -3.49 16 2 C -0.13 -5.25 5.68 30.60 0.17 -5.08 16 3 C 0.15 6.27 5.72 86.38 0.49 6.77 16 4 N -0.60 -29.68 2.07 -706.36 -1.46 -31.14 16 5 C -0.25 -13.60 9.70 84.03 0.81 -12.78 16 6 H 0.07 3.66 7.84 -2.91 -0.02 3.63 16 7 C -0.04 -1.99 5.41 84.86 0.46 -1.53 16 8 N -0.92 -50.44 8.21 21.65 0.18 -50.26 16 9 Si 0.96 46.02 29.56 68.60 2.03 48.05 16 10 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.31 -15.37 7.11 99.48 0.71 -14.67 16 12 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 13 C 0.17 7.87 4.02 85.63 0.34 8.22 16 14 C 0.54 24.56 5.63 87.66 0.49 25.06 16 15 O -0.57 -30.35 12.97 -3.03 -0.04 -30.39 16 16 N -0.62 -22.41 2.46 -826.15 -2.03 -24.44 16 17 C 0.11 3.19 5.98 86.38 0.52 3.70 16 18 C -0.17 -3.98 10.24 71.98 0.74 -3.24 16 19 C 0.16 5.19 5.57 85.63 0.48 5.67 16 20 C -0.07 -2.01 5.39 -19.87 -0.11 -2.12 16 21 C -0.12 -3.74 9.70 22.27 0.22 -3.52 16 22 C -0.09 -2.26 10.04 22.26 0.22 -2.03 16 23 C -0.15 -3.35 10.03 22.31 0.22 -3.13 16 24 C 0.08 1.95 7.30 22.38 0.16 2.11 16 25 F -0.14 -3.43 17.27 44.97 0.78 -2.66 16 26 C -0.14 -3.35 7.52 22.31 0.17 -3.19 16 27 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.04 1.95 6.38 -2.39 -0.02 1.94 16 31 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.04 1.83 8.07 -2.39 -0.02 1.81 16 33 H 0.05 2.01 7.84 -2.39 -0.02 1.99 16 34 H 0.24 13.44 8.31 -92.71 -0.77 12.67 16 35 H 0.10 4.83 5.50 -2.39 -0.01 4.82 16 36 H 0.04 1.75 6.91 -2.39 -0.02 1.74 16 37 H 0.07 2.17 6.44 -2.39 -0.02 2.15 16 38 H 0.09 2.05 7.89 -2.39 -0.02 2.03 16 39 H 0.08 1.58 8.14 -2.38 -0.02 1.57 16 40 H 0.06 1.40 5.26 -2.39 -0.01 1.39 16 41 H 0.04 1.07 7.22 -2.38 -0.02 1.06 16 42 H 0.06 2.17 7.37 -2.38 -0.02 2.16 16 43 H 0.10 2.58 7.84 -2.39 -0.02 2.56 16 44 H 0.11 3.92 7.56 -2.91 -0.02 3.90 16 45 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 46 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 47 H 0.15 3.04 7.73 -2.91 -0.02 3.02 16 Total: -1.00 -65.76 376.66 6.52 -59.24 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.96 Total: 20.17 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: 6.11 Total: 11.42 kcal Atomic # 7 Polarization: -102.53 SS G_CDS: -3.31 Total: -105.84 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -0.04 Total: -30.39 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.78 Total: -2.66 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -65.76 6.52 -59.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104675990.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.501 kcal (2) G-P(sol) polarization free energy of solvation -65.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.87 seconds