Wall clock time and date at job start Sat Apr 11 2020 00:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46502 * 109.47278 * 2 1 4 4 C 1.36931 * 120.00323 * 274.00708 * 3 2 1 5 5 H 1.08003 * 120.00200 * 322.86966 * 4 3 2 6 6 C 1.38814 * 120.00129 * 142.87146 * 4 3 2 7 7 N 1.31624 * 119.99995 * 159.08808 * 6 4 3 8 8 Si 1.86801 * 120.00057 * 339.09168 * 6 4 3 9 9 H 1.48498 * 109.46971 * 95.17809 * 8 6 4 10 10 H 1.48499 * 109.47078 * 215.17658 * 8 6 4 11 11 H 1.48501 * 109.46815 * 335.17835 * 8 6 4 12 12 C 1.46501 * 119.99614 * 94.00158 * 3 2 1 13 13 C 1.50696 * 109.47262 * 90.00416 * 12 3 2 14 14 O 1.21282 * 119.99681 * 359.97438 * 13 12 3 15 15 N 1.34775 * 120.00363 * 180.02562 * 13 12 3 16 16 C 1.46498 * 119.99663 * 359.97438 * 15 13 12 17 17 C 1.52998 * 109.47081 * 86.88907 * 16 15 13 18 18 C 1.46502 * 119.99880 * 179.72483 * 15 13 12 19 19 H 1.08999 * 109.47095 * 307.44687 * 18 15 13 20 20 C 1.53003 * 109.46765 * 187.44809 * 18 15 13 21 21 C 1.50698 * 109.47426 * 67.45149 * 18 15 13 22 22 C 1.38243 * 119.97187 * 45.76113 * 21 18 15 23 23 C 1.38206 * 120.02198 * 179.72673 * 22 21 18 24 24 C 1.38461 * 119.97199 * 0.53012 * 23 22 21 25 25 F 1.35094 * 120.02261 * 179.72555 * 24 23 22 26 26 C 1.38461 * 119.94862 * 359.74510 * 24 23 22 27 27 C 1.38197 * 119.97444 * 359.97438 * 26 24 23 28 28 H 1.08994 * 109.46656 * 299.99523 * 1 2 3 29 29 H 1.09001 * 109.47134 * 59.99467 * 1 2 3 30 30 H 1.09002 * 109.46815 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46895 * 240.00901 * 2 1 3 32 32 H 1.08989 * 109.47468 * 120.00561 * 2 1 3 33 33 H 0.97000 * 119.99957 * 179.97438 * 7 6 4 34 34 H 1.09006 * 109.47335 * 330.00087 * 12 3 2 35 35 H 1.09000 * 109.47010 * 210.00355 * 12 3 2 36 36 H 1.09001 * 109.46896 * 206.88247 * 16 15 13 37 37 H 1.08991 * 109.47441 * 326.88523 * 16 15 13 38 38 H 1.09001 * 109.46717 * 299.99450 * 17 16 15 39 39 H 1.08993 * 109.47780 * 59.99336 * 17 16 15 40 40 H 1.08997 * 109.47035 * 180.02562 * 17 16 15 41 41 H 1.09001 * 109.47200 * 179.97438 * 20 18 15 42 42 H 1.08993 * 109.47289 * 300.00222 * 20 18 15 43 43 H 1.09007 * 109.47054 * 59.99869 * 20 18 15 44 44 H 1.07998 * 119.99185 * 359.97438 * 22 21 18 45 45 H 1.07994 * 120.01386 * 180.25068 * 23 22 21 46 46 H 1.07999 * 120.01215 * 179.97438 * 26 24 23 47 47 H 1.08004 * 119.98468 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1686 2.0544 -1.1829 5 1 2.5189 1.5320 -2.0609 6 6 1.8705 3.4083 -1.2537 7 7 2.3801 4.1448 -2.2183 8 14 0.7463 4.1851 0.0199 9 1 1.5658 4.7880 1.1016 10 1 -0.0769 5.2400 -0.6240 11 1 -0.1438 3.1445 0.5947 12 6 2.3461 2.0422 1.2657 13 6 3.7947 1.7965 1.6005 14 8 4.4853 1.1340 0.8554 15 7 4.3225 2.3120 2.7283 16 6 3.4882 3.1118 3.6285 17 6 2.7677 2.1873 4.6120 18 6 5.7293 2.0680 3.0568 19 1 5.9299 0.9972 3.0228 20 6 6.0243 2.5979 4.4615 21 6 6.6084 2.7758 2.0581 22 6 6.3373 4.0845 1.7048 23 6 7.1462 4.7364 0.7934 24 6 8.2219 4.0746 0.2258 25 9 9.0100 4.7091 -0.6695 26 6 8.4889 2.7620 0.5762 27 6 7.6821 2.1140 1.4922 28 1 -0.3632 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8902 32 1 1.8934 -0.5139 0.8898 33 1 2.1715 5.0908 -2.2680 34 1 1.7164 1.6400 2.0594 35 1 2.1717 3.1141 1.1716 36 1 4.1162 3.8110 4.1807 37 1 2.7528 3.6662 3.0457 38 1 2.1397 1.4882 4.0598 39 1 3.5030 1.6328 5.1949 40 1 2.1465 2.7823 5.2814 41 1 7.0708 2.4160 4.7061 42 1 5.8236 3.6686 4.4955 43 1 5.3884 2.0860 5.1839 44 1 5.4956 4.5991 2.1442 45 1 6.9368 5.7601 0.5205 46 1 9.3274 2.2446 0.1338 47 1 7.8900 1.0900 1.7654 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121052643.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:11 Heat of formation + Delta-G solvation = -19.412275 kcal Electronic energy + Delta-G solvation = -29035.543944 eV Core-core repulsion = 25134.273271 eV Total energy + Delta-G solvation = -3901.270673 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -48.66661 -40.07827 -38.40930 -36.34547 -35.39001 -32.80729 -31.87900 -30.93178 -30.08775 -29.65496 -28.86225 -26.71420 -24.10946 -23.80402 -22.82218 -22.66792 -21.30959 -20.12163 -18.71541 -17.47512 -16.89444 -16.83683 -16.40305 -15.86734 -15.47642 -15.34941 -15.10535 -14.41568 -14.30524 -13.80365 -13.77097 -13.36670 -13.33989 -13.21390 -13.13905 -12.92464 -12.64918 -12.51231 -12.39736 -12.27192 -11.94679 -11.77897 -11.68498 -11.40848 -11.38010 -11.10107 -10.94278 -10.77001 -10.73026 -10.60535 -10.09907 -9.99546 -9.59456 -9.10473 -8.87152 -8.54011 -8.40749 -8.19372 -6.85738 -5.96936 -3.37935 1.33833 1.47045 3.15707 3.29857 3.36753 3.41726 3.50678 3.84240 4.46808 4.48412 4.76906 4.82720 4.91680 4.98314 5.01895 5.08585 5.19312 5.24427 5.33396 5.40468 5.44889 5.49897 5.56846 5.59918 5.78871 5.83501 5.87055 5.94510 5.95159 6.01065 6.10053 6.12063 6.21277 6.25789 6.28954 6.32102 6.37694 6.44888 6.50861 6.67254 6.84280 6.97484 7.08405 7.10303 7.84506 8.06876 8.42900 8.88441 9.06578 9.70205 10.08542 11.18847 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011133 B = 0.005538 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.510463 B = 5054.859436 C = 6089.032327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.151 3.849 3 N -0.581 5.581 4 C -0.253 4.253 5 H 0.080 0.920 6 C 0.032 3.968 7 N -0.896 5.896 8 Si 0.867 3.133 9 H -0.287 1.287 10 H -0.299 1.299 11 H -0.264 1.264 12 C 0.121 3.879 13 C 0.489 3.511 14 O -0.507 6.507 15 N -0.624 5.624 16 C 0.097 3.903 17 C -0.172 4.172 18 C 0.187 3.813 19 H 0.082 0.918 20 C -0.155 4.155 21 C -0.093 4.093 22 C -0.070 4.070 23 C -0.150 4.150 24 C 0.094 3.906 25 F -0.144 7.144 26 C -0.154 4.154 27 C -0.072 4.072 28 H 0.040 0.960 29 H 0.058 0.942 30 H 0.040 0.960 31 H 0.052 0.948 32 H 0.037 0.963 33 H 0.262 0.738 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.125 0.875 45 H 0.132 0.868 46 H 0.131 0.869 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.177 -1.722 16.353 17.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.025 3.975 3 N -0.301 5.301 4 C -0.382 4.382 5 H 0.097 0.903 6 C -0.168 4.168 7 N -0.537 5.537 8 Si 0.698 3.302 9 H -0.216 1.216 10 H -0.227 1.227 11 H -0.189 1.189 12 C -0.010 4.010 13 C 0.276 3.724 14 O -0.379 6.379 15 N -0.362 5.362 16 C -0.027 4.027 17 C -0.230 4.230 18 C 0.083 3.917 19 H 0.100 0.900 20 C -0.212 4.212 21 C -0.094 4.094 22 C -0.088 4.088 23 C -0.168 4.168 24 C 0.075 3.925 25 F -0.123 7.123 26 C -0.173 4.173 27 C -0.091 4.091 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.143 0.857 45 H 0.150 0.850 46 H 0.149 0.851 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.549 -1.948 15.739 17.158 hybrid contribution -0.498 0.909 0.378 1.103 sum 6.051 -1.039 16.117 17.246 Atomic orbital electron populations 1.22316 0.99321 0.99294 1.01749 1.20814 0.91587 0.85709 0.99342 1.43798 1.72916 1.11578 1.01775 1.18787 1.38427 0.92536 0.88418 0.90265 1.25452 0.98209 0.96659 0.96491 1.69876 1.43290 1.06211 1.34356 0.87079 0.82773 0.78963 0.81394 1.21583 1.22655 1.18854 1.21418 0.90055 0.99102 0.90384 1.22893 0.92261 0.78375 0.78902 1.90619 1.62005 1.37884 1.47375 1.48625 1.09089 1.54654 1.23817 1.21593 0.94601 0.93862 0.92618 1.22292 1.00762 1.00505 0.99427 1.19713 0.80945 0.98869 0.92129 0.90043 1.22158 1.02341 1.01784 0.94945 1.20170 0.96039 0.94257 0.98941 1.20719 0.97689 0.94149 0.96265 1.21081 0.95292 1.01303 0.99169 1.17681 0.91717 0.91717 0.91385 1.91469 1.73017 1.82099 1.65732 1.21022 1.02235 0.93410 1.00642 1.20742 0.93935 0.99217 0.95181 0.94076 0.92280 0.94109 0.93011 0.94435 0.92794 0.91482 0.90473 0.90113 0.90608 0.92175 0.92277 0.91809 0.91302 0.91645 0.91370 0.85718 0.85032 0.85091 0.85400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 10.22 37.16 0.38 -2.68 16 2 C 0.15 3.13 6.39 -4.04 -0.03 3.10 16 3 N -0.58 -14.07 1.59 -174.60 -0.28 -14.34 16 4 C -0.25 -7.24 9.94 -15.06 -0.15 -7.39 16 5 H 0.08 2.52 8.06 -52.48 -0.42 2.09 16 6 C 0.03 0.92 5.33 -17.43 -0.09 0.83 16 7 N -0.90 -27.72 13.97 55.49 0.78 -26.94 16 8 Si 0.87 21.28 24.93 -169.99 -4.24 17.04 16 9 H -0.29 -6.57 6.68 56.52 0.38 -6.19 16 10 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 11 H -0.26 -6.19 7.11 56.52 0.40 -5.79 16 12 C 0.12 2.58 3.54 -5.20 -0.02 2.56 16 13 C 0.49 10.09 7.48 -10.99 -0.08 10.00 16 14 O -0.51 -12.39 15.86 5.56 0.09 -12.30 16 15 N -0.62 -9.74 2.06 -167.43 -0.35 -10.08 16 16 C 0.10 1.19 5.25 -4.04 -0.02 1.17 16 17 C -0.17 -1.74 10.08 37.16 0.37 -1.36 16 18 C 0.19 2.54 2.76 -69.08 -0.19 2.35 16 19 H 0.08 1.15 7.90 -51.93 -0.41 0.74 16 20 C -0.16 -1.46 8.00 37.16 0.30 -1.16 16 21 C -0.09 -1.42 4.03 -104.62 -0.42 -1.85 16 22 C -0.07 -1.12 9.23 -39.59 -0.37 -1.48 16 23 C -0.15 -2.44 10.03 -39.51 -0.40 -2.83 16 24 C 0.09 1.55 7.30 -39.42 -0.29 1.26 16 25 F -0.14 -2.40 17.27 2.25 0.04 -2.36 16 26 C -0.15 -2.32 10.03 -39.51 -0.40 -2.72 16 27 C -0.07 -1.07 9.66 -39.60 -0.38 -1.45 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 1.11 8.07 -51.92 -0.42 0.69 16 32 H 0.04 0.71 8.04 -51.94 -0.42 0.29 16 33 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 34 H 0.07 1.23 6.71 -51.93 -0.35 0.88 16 35 H 0.08 1.76 2.35 -51.93 -0.12 1.64 16 36 H 0.08 0.79 5.73 -51.93 -0.30 0.50 16 37 H 0.08 1.06 6.57 -51.93 -0.34 0.72 16 38 H 0.06 0.69 6.84 -51.93 -0.36 0.33 16 39 H 0.06 0.54 6.55 -51.93 -0.34 0.20 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.59 6.55 -51.93 -0.34 0.25 16 43 H 0.07 0.56 6.30 -51.92 -0.33 0.23 16 44 H 0.12 1.88 7.89 -52.49 -0.41 1.47 16 45 H 0.13 1.95 8.06 -52.49 -0.42 1.52 16 46 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 47 H 0.13 1.61 7.99 -52.48 -0.42 1.20 16 LS Contribution 376.54 15.07 5.67 5.67 Total: -1.00 -34.10 376.54 -7.16 -41.25 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -7.09 Total: 3.71 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -1.78 Total: -1.65 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: 0.15 Total: -51.37 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.09 Total: -12.30 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.24 Total: 17.04 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.10 -7.16 -41.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121052643.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.841 kcal (2) G-P(sol) polarization free energy of solvation -34.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds