Wall clock time and date at job start Sat Apr 11 2020 00:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46502 * 109.47278 * 2 1 4 4 C 1.36931 * 120.00323 * 274.00708 * 3 2 1 5 5 H 1.08003 * 120.00200 * 322.86966 * 4 3 2 6 6 C 1.38814 * 120.00129 * 142.87146 * 4 3 2 7 7 N 1.31624 * 119.99995 * 159.08808 * 6 4 3 8 8 Si 1.86801 * 120.00057 * 339.09168 * 6 4 3 9 9 H 1.48498 * 109.46971 * 95.17809 * 8 6 4 10 10 H 1.48499 * 109.47078 * 215.17658 * 8 6 4 11 11 H 1.48501 * 109.46815 * 335.17835 * 8 6 4 12 12 C 1.46501 * 119.99614 * 94.00158 * 3 2 1 13 13 C 1.50696 * 109.47262 * 90.00416 * 12 3 2 14 14 O 1.21282 * 119.99681 * 359.97438 * 13 12 3 15 15 N 1.34775 * 120.00363 * 180.02562 * 13 12 3 16 16 C 1.46498 * 119.99663 * 359.97438 * 15 13 12 17 17 C 1.52998 * 109.47081 * 86.88907 * 16 15 13 18 18 C 1.46502 * 119.99880 * 179.72483 * 15 13 12 19 19 H 1.08999 * 109.47095 * 307.44687 * 18 15 13 20 20 C 1.53003 * 109.46765 * 187.44809 * 18 15 13 21 21 C 1.50698 * 109.47426 * 67.45149 * 18 15 13 22 22 C 1.38243 * 119.97187 * 45.76113 * 21 18 15 23 23 C 1.38206 * 120.02198 * 179.72673 * 22 21 18 24 24 C 1.38461 * 119.97199 * 0.53012 * 23 22 21 25 25 F 1.35094 * 120.02261 * 179.72555 * 24 23 22 26 26 C 1.38461 * 119.94862 * 359.74510 * 24 23 22 27 27 C 1.38197 * 119.97444 * 359.97438 * 26 24 23 28 28 H 1.08994 * 109.46656 * 299.99523 * 1 2 3 29 29 H 1.09001 * 109.47134 * 59.99467 * 1 2 3 30 30 H 1.09002 * 109.46815 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46895 * 240.00901 * 2 1 3 32 32 H 1.08989 * 109.47468 * 120.00561 * 2 1 3 33 33 H 0.97000 * 119.99957 * 179.97438 * 7 6 4 34 34 H 1.09006 * 109.47335 * 330.00087 * 12 3 2 35 35 H 1.09000 * 109.47010 * 210.00355 * 12 3 2 36 36 H 1.09001 * 109.46896 * 206.88247 * 16 15 13 37 37 H 1.08991 * 109.47441 * 326.88523 * 16 15 13 38 38 H 1.09001 * 109.46717 * 299.99450 * 17 16 15 39 39 H 1.08993 * 109.47780 * 59.99336 * 17 16 15 40 40 H 1.08997 * 109.47035 * 180.02562 * 17 16 15 41 41 H 1.09001 * 109.47200 * 179.97438 * 20 18 15 42 42 H 1.08993 * 109.47289 * 300.00222 * 20 18 15 43 43 H 1.09007 * 109.47054 * 59.99869 * 20 18 15 44 44 H 1.07998 * 119.99185 * 359.97438 * 22 21 18 45 45 H 1.07994 * 120.01386 * 180.25068 * 23 22 21 46 46 H 1.07999 * 120.01215 * 179.97438 * 26 24 23 47 47 H 1.08004 * 119.98468 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1686 2.0544 -1.1829 5 1 2.5189 1.5320 -2.0609 6 6 1.8705 3.4083 -1.2537 7 7 2.3801 4.1448 -2.2183 8 14 0.7463 4.1851 0.0199 9 1 1.5658 4.7880 1.1016 10 1 -0.0769 5.2400 -0.6240 11 1 -0.1438 3.1445 0.5947 12 6 2.3461 2.0422 1.2657 13 6 3.7947 1.7965 1.6005 14 8 4.4853 1.1340 0.8554 15 7 4.3225 2.3120 2.7283 16 6 3.4882 3.1118 3.6285 17 6 2.7677 2.1873 4.6120 18 6 5.7293 2.0680 3.0568 19 1 5.9299 0.9972 3.0228 20 6 6.0243 2.5979 4.4615 21 6 6.6084 2.7758 2.0581 22 6 6.3373 4.0845 1.7048 23 6 7.1462 4.7364 0.7934 24 6 8.2219 4.0746 0.2258 25 9 9.0100 4.7091 -0.6695 26 6 8.4889 2.7620 0.5762 27 6 7.6821 2.1140 1.4922 28 1 -0.3632 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8902 32 1 1.8934 -0.5139 0.8898 33 1 2.1715 5.0908 -2.2680 34 1 1.7164 1.6400 2.0594 35 1 2.1717 3.1141 1.1716 36 1 4.1162 3.8110 4.1807 37 1 2.7528 3.6662 3.0457 38 1 2.1397 1.4882 4.0598 39 1 3.5030 1.6328 5.1949 40 1 2.1465 2.7823 5.2814 41 1 7.0708 2.4160 4.7061 42 1 5.8236 3.6686 4.4955 43 1 5.3884 2.0860 5.1839 44 1 5.4956 4.5991 2.1442 45 1 6.9368 5.7601 0.5205 46 1 9.3274 2.2446 0.1338 47 1 7.8900 1.0900 1.7654 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121052643.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:10 Heat of formation + Delta-G solvation = -39.293853 kcal Electronic energy + Delta-G solvation = -29036.406074 eV Core-core repulsion = 25134.273271 eV Total energy + Delta-G solvation = -3902.132802 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.95713 -41.38872 -39.77228 -37.84800 -37.01234 -34.01727 -33.87032 -32.13335 -31.61530 -30.87588 -29.96559 -28.44995 -25.73344 -25.05812 -24.03385 -23.79561 -22.69539 -21.77298 -20.10924 -18.79764 -18.67598 -18.26730 -17.75458 -17.24561 -16.94055 -16.65379 -16.58335 -15.96938 -15.74433 -15.27287 -14.97357 -14.88100 -14.71210 -14.58603 -14.50560 -14.18883 -14.04942 -13.82563 -13.53577 -13.40925 -13.24815 -13.18568 -13.08197 -12.76178 -12.61846 -12.46425 -12.38761 -12.09096 -12.04941 -11.89461 -11.69302 -11.62546 -11.55521 -10.83093 -10.55453 -10.08789 -9.70247 -9.44661 -8.80824 -8.18204 -5.58776 0.10592 0.25335 1.21582 1.40074 1.51319 1.87884 2.08102 2.39904 2.61818 3.04884 3.25698 3.35138 3.68491 3.70358 3.85103 3.90384 4.07181 4.20153 4.22951 4.28375 4.32864 4.36184 4.39087 4.46410 4.49695 4.61895 4.72453 4.76624 4.79802 4.87020 4.95380 4.99107 5.01921 5.06115 5.10359 5.11081 5.23347 5.24279 5.25743 5.47397 5.50556 5.54052 5.79892 5.89967 5.92132 6.16875 6.51411 6.93089 7.44197 7.62880 7.99171 9.02191 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011133 B = 0.005538 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.510463 B = 5054.859436 C = 6089.032327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.146 3.854 3 N -0.594 5.594 4 C -0.249 4.249 5 H 0.021 0.979 6 C -0.029 4.029 7 N -0.953 5.953 8 Si 0.941 3.059 9 H -0.259 1.259 10 H -0.308 1.308 11 H -0.241 1.241 12 C 0.117 3.883 13 C 0.487 3.513 14 O -0.559 6.559 15 N -0.612 5.612 16 C 0.085 3.915 17 C -0.166 4.166 18 C 0.185 3.815 19 H 0.077 0.923 20 C -0.146 4.146 21 C -0.099 4.099 22 C -0.084 4.084 23 C -0.165 4.165 24 C 0.071 3.929 25 F -0.150 7.150 26 C -0.157 4.157 27 C -0.081 4.081 28 H 0.052 0.948 29 H 0.033 0.967 30 H 0.075 0.925 31 H 0.029 0.971 32 H 0.060 0.940 33 H 0.262 0.738 34 H 0.105 0.895 35 H 0.066 0.934 36 H 0.111 0.889 37 H 0.062 0.938 38 H 0.046 0.954 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.132 0.868 45 H 0.138 0.862 46 H 0.152 0.848 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.123 -2.010 20.859 21.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.022 3.978 3 N -0.315 5.315 4 C -0.379 4.379 5 H 0.039 0.961 6 C -0.224 4.224 7 N -0.597 5.597 8 Si 0.768 3.232 9 H -0.185 1.185 10 H -0.237 1.237 11 H -0.164 1.164 12 C -0.012 4.012 13 C 0.274 3.726 14 O -0.436 6.436 15 N -0.348 5.348 16 C -0.037 4.037 17 C -0.224 4.224 18 C 0.082 3.918 19 H 0.095 0.905 20 C -0.203 4.203 21 C -0.100 4.100 22 C -0.103 4.103 23 C -0.184 4.184 24 C 0.051 3.949 25 F -0.129 7.129 26 C -0.175 4.175 27 C -0.099 4.099 28 H 0.071 0.929 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.123 0.877 35 H 0.084 0.916 36 H 0.129 0.871 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.150 0.850 45 H 0.155 0.845 46 H 0.169 0.831 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.493 -2.244 20.339 21.186 hybrid contribution -0.058 0.911 -1.036 1.381 sum 5.434 -1.333 19.303 20.098 Atomic orbital electron populations 1.22169 0.96889 1.01390 1.01009 1.20938 0.93457 0.84031 0.99414 1.43850 1.73898 1.12501 1.01291 1.18503 1.37701 0.92801 0.88931 0.96083 1.26173 0.99512 0.97088 0.99630 1.70051 1.45335 1.06570 1.37734 0.85900 0.80293 0.78063 0.78986 1.18514 1.23681 1.16378 1.21500 0.91526 0.98295 0.89917 1.22561 0.91853 0.78337 0.79882 1.90604 1.62884 1.40555 1.49512 1.48495 1.10314 1.53310 1.22650 1.21952 0.94699 0.94535 0.92500 1.22246 1.00996 1.00126 0.99013 1.19936 0.79136 0.98694 0.94066 0.90530 1.22143 1.03811 1.02251 0.92079 1.20491 0.96321 0.94090 0.99113 1.20887 0.98001 0.94736 0.96638 1.21298 0.95602 1.01920 0.99581 1.17946 0.92276 0.92579 0.92056 1.91445 1.73176 1.82296 1.66010 1.21329 1.02823 0.92958 1.00421 1.21082 0.93807 1.00156 0.94883 0.92862 0.94780 0.90642 0.95200 0.92163 0.92948 0.87706 0.91642 0.87063 0.91971 0.93495 0.90884 0.89266 0.89798 0.90821 0.89348 0.84978 0.84457 0.83055 0.83329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.35 10.22 71.98 0.74 -4.62 16 2 C 0.15 5.97 6.39 86.38 0.55 6.53 16 3 N -0.59 -28.83 1.59 -706.33 -1.12 -29.95 16 4 C -0.25 -14.91 9.94 84.04 0.84 -14.08 16 5 H 0.02 1.47 8.06 -2.91 -0.02 1.45 16 6 C -0.03 -1.70 5.33 84.86 0.45 -1.25 16 7 N -0.95 -61.68 13.97 21.65 0.30 -61.38 16 8 Si 0.94 43.93 24.93 68.60 1.71 45.64 16 9 H -0.26 -10.76 6.68 99.48 0.66 -10.09 16 10 H -0.31 -14.79 7.11 99.48 0.71 -14.09 16 11 H -0.24 -10.23 7.11 99.48 0.71 -9.52 16 12 C 0.12 4.77 3.54 85.63 0.30 5.07 16 13 C 0.49 19.52 7.48 87.66 0.66 20.17 16 14 O -0.56 -27.61 15.86 -3.04 -0.05 -27.66 16 15 N -0.61 -17.52 2.06 -802.02 -1.65 -19.17 16 16 C 0.08 1.74 5.25 86.38 0.45 2.19 16 17 C -0.17 -2.51 10.08 71.98 0.73 -1.79 16 18 C 0.18 4.56 2.76 44.25 0.12 4.68 16 19 H 0.08 2.00 7.90 -2.39 -0.02 1.98 16 20 C -0.15 -2.12 8.00 71.98 0.58 -1.54 16 21 C -0.10 -2.92 4.03 -19.86 -0.08 -3.00 16 22 C -0.08 -2.65 9.23 22.26 0.21 -2.45 16 23 C -0.17 -5.47 10.03 22.32 0.22 -5.25 16 24 C 0.07 2.36 7.30 22.38 0.16 2.53 16 25 F -0.15 -5.13 17.27 44.97 0.78 -4.35 16 26 C -0.16 -4.69 10.03 22.31 0.22 -4.46 16 27 C -0.08 -2.33 9.66 22.26 0.22 -2.12 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 2.06 8.14 -2.39 -0.02 2.05 16 31 H 0.03 1.32 8.07 -2.38 -0.02 1.30 16 32 H 0.06 2.17 8.04 -2.39 -0.02 2.15 16 33 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 34 H 0.11 3.44 6.71 -2.38 -0.02 3.42 16 35 H 0.07 2.84 2.35 -2.39 -0.01 2.83 16 36 H 0.11 1.63 5.73 -2.39 -0.01 1.62 16 37 H 0.06 1.49 6.57 -2.39 -0.02 1.47 16 38 H 0.05 0.85 6.84 -2.39 -0.02 0.83 16 39 H 0.07 0.92 6.55 -2.39 -0.02 0.91 16 40 H 0.09 0.95 8.14 -2.39 -0.02 0.94 16 41 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.07 0.98 6.55 -2.39 -0.02 0.96 16 43 H 0.09 0.97 6.30 -2.38 -0.02 0.95 16 44 H 0.13 3.82 7.89 -2.91 -0.02 3.80 16 45 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 46 H 0.15 3.75 8.06 -2.91 -0.02 3.72 16 47 H 0.15 3.55 7.99 -2.91 -0.02 3.53 16 Total: -1.00 -79.98 376.54 7.25 -72.73 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.92 Total: 23.53 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 6.36 Total: 0.61 kcal Atomic # 7 Polarization: -108.02 SS G_CDS: -2.47 Total: -110.50 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.05 Total: -27.66 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.78 Total: -4.35 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.71 Total: 45.64 kcal Total: -79.98 7.25 -72.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121052643.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.435 kcal (2) G-P(sol) polarization free energy of solvation -79.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds