Wall clock time and date at job start Sat Apr 11 2020 00:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.47105 * 2 1 4 4 C 1.46502 * 120.00199 * 269.99444 * 3 2 1 5 5 C 1.50700 * 109.47211 * 270.00602 * 4 3 2 6 6 C 1.38264 * 119.98353 * 269.72209 * 5 4 3 7 7 C 1.38221 * 120.05029 * 179.72948 * 6 5 4 8 8 C 1.38216 * 120.02563 * 0.54553 * 7 6 5 9 9 C 1.38438 * 119.97430 * 359.72562 * 8 7 6 10 10 F 1.35097 * 120.02939 * 180.02562 * 9 8 7 11 11 C 1.38172 * 119.98958 * 89.99761 * 5 4 3 12 12 C 1.34779 * 119.99982 * 89.99929 * 3 2 1 13 13 O 1.21282 * 119.99744 * 180.02562 * 12 3 2 14 14 C 1.50696 * 119.99954 * 359.97438 * 12 3 2 15 15 N 1.46901 * 109.47338 * 180.02562 * 14 12 3 16 16 C 1.46904 * 110.99837 * 66.04234 * 15 14 12 17 17 C 1.46897 * 111.00395 * 189.99861 * 15 14 12 18 18 H 1.08997 * 109.47139 * 300.00200 * 17 15 14 19 19 C 1.53000 * 109.46761 * 59.99587 * 17 15 14 20 20 C 1.50693 * 109.47362 * 179.97438 * 17 15 14 21 21 H 1.08009 * 120.00046 * 354.31814 * 20 17 15 22 22 C 1.37878 * 120.00277 * 174.31901 * 20 17 15 23 23 N 1.31517 * 120.00046 * 155.04484 * 22 20 17 24 24 Si 1.86803 * 119.99888 * 335.32679 * 22 20 17 25 25 H 1.48494 * 109.46874 * 179.72321 * 24 22 20 26 26 H 1.48497 * 109.46669 * 299.72117 * 24 22 20 27 27 H 1.48501 * 109.46925 * 59.72371 * 24 22 20 28 28 H 1.08992 * 109.46875 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46978 * 300.00487 * 1 2 3 30 30 H 1.09009 * 109.46480 * 60.00283 * 1 2 3 31 31 H 1.09000 * 109.47431 * 239.99536 * 2 1 3 32 32 H 1.08996 * 109.46568 * 120.00080 * 2 1 3 33 33 H 1.09002 * 109.46340 * 30.00445 * 4 3 2 34 34 H 1.08998 * 109.47341 * 149.99730 * 4 3 2 35 35 H 1.08009 * 119.97585 * 359.97438 * 6 5 4 36 36 H 1.08003 * 119.98611 * 180.27866 * 7 6 5 37 37 H 1.08001 * 120.01637 * 179.75018 * 8 7 6 38 38 H 1.08005 * 120.01115 * 359.97438 * 11 5 4 39 39 H 1.08996 * 109.47402 * 59.99855 * 14 12 3 40 40 H 1.09007 * 109.47005 * 299.99906 * 14 12 3 41 41 H 1.09002 * 109.46603 * 183.95579 * 16 15 14 42 42 H 1.08996 * 109.47049 * 303.95494 * 16 15 14 43 43 H 1.08994 * 109.47094 * 63.95767 * 16 15 14 44 44 H 1.09002 * 109.46962 * 171.91728 * 19 17 15 45 45 H 1.08998 * 109.47417 * 291.91531 * 19 17 15 46 46 H 1.09001 * 109.47132 * 51.91876 * 19 17 15 47 47 H 0.97000 * 120.00009 * 355.22761 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2627 2.0718 -1.2687 5 6 3.6860 1.8349 -1.7037 6 6 4.6834 2.7073 -1.3091 7 6 5.9902 2.4882 -1.7026 8 6 6.2995 1.4029 -2.5005 9 6 5.3007 0.5318 -2.9009 10 9 5.6018 -0.5297 -3.6804 11 6 3.9927 0.7492 -2.5014 12 6 2.2430 2.0166 1.1672 13 8 2.6468 3.1602 1.1672 14 6 1.9913 1.3064 2.4723 15 7 2.3090 2.2065 3.5889 16 6 1.3824 3.3459 3.6266 17 6 2.3048 1.4820 4.8668 18 1 1.3186 1.0497 5.0361 19 6 3.3503 0.3658 4.8236 20 6 2.6346 2.4357 5.9860 21 1 2.9178 3.4537 5.7623 22 6 2.5750 2.0087 7.2956 23 7 3.2946 2.6111 8.2171 24 14 1.4783 0.5696 7.7598 25 1 1.5975 0.3061 9.2164 26 1 0.0677 0.8957 7.4296 27 1 1.8979 -0.6369 7.0026 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5818 1.6877 -2.0283 34 1 2.0957 3.1410 -1.1385 35 1 4.4419 3.5584 -0.6895 36 1 6.7692 3.1678 -1.3900 37 1 7.3199 1.2341 -2.8113 38 1 3.2127 0.0702 -2.8129 39 1 2.6210 0.4186 2.5303 40 1 0.9431 1.0126 2.5298 41 1 1.6826 4.0321 4.4185 42 1 1.4053 3.8646 2.6682 43 1 0.3721 2.9862 3.8211 44 1 3.4491 -0.0779 5.8143 45 1 3.0366 -0.3986 4.1127 46 1 4.3101 0.7788 4.5131 47 1 3.9187 3.3096 7.9653 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161796098.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:52 Heat of formation + Delta-G solvation = -40.786901 kcal Electronic energy + Delta-G solvation = -27859.384801 eV Core-core repulsion = 23957.187255 eV Total energy + Delta-G solvation = -3902.197546 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -49.09298 -40.27118 -38.96357 -36.84399 -35.85890 -32.91775 -32.47069 -30.82370 -30.14838 -29.95972 -28.44268 -26.20557 -24.35107 -23.81252 -23.25828 -22.85554 -21.79751 -19.55598 -18.81034 -17.55694 -17.46846 -17.00862 -16.39401 -16.35315 -16.25988 -15.74774 -15.49648 -14.79896 -14.21150 -14.11474 -13.97780 -13.91962 -13.69165 -13.58658 -13.30258 -12.87710 -12.67576 -12.47337 -12.42433 -12.22906 -11.86555 -11.83794 -11.72837 -11.48888 -11.45043 -11.32437 -11.10548 -10.88076 -10.52946 -10.35964 -10.13382 -9.85124 -9.50434 -9.16330 -8.90599 -8.86170 -8.74323 -8.18611 -7.32107 -6.46377 -4.00617 0.90039 0.99561 2.84309 2.90528 3.37741 3.42066 3.50443 3.59898 3.99865 4.42371 4.47222 4.50638 4.65111 4.71180 4.82173 4.89416 5.02116 5.04300 5.08544 5.20279 5.22263 5.23907 5.45648 5.52083 5.56129 5.62678 5.67152 5.69049 5.85306 5.88633 5.98408 6.15250 6.17652 6.30138 6.31213 6.41515 6.46623 6.56637 6.67969 6.69517 6.88933 6.98499 7.30100 7.36329 7.75516 8.02610 8.31114 8.42715 8.47771 9.02360 9.63245 10.92311 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016871 B = 0.003127 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.238182 B = 8951.853897 C = 9354.865315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.104 3.896 3 N -0.618 5.618 4 C 0.156 3.844 5 C -0.076 4.076 6 C -0.102 4.102 7 C -0.092 4.092 8 C -0.153 4.153 9 C 0.090 3.910 10 F -0.143 7.143 11 C -0.143 4.143 12 C 0.520 3.480 13 O -0.512 6.512 14 C 0.032 3.968 15 N -0.511 5.511 16 C 0.037 3.963 17 C 0.192 3.808 18 H -0.011 1.011 19 C -0.141 4.141 20 C -0.597 4.597 21 H 0.067 0.933 22 C 0.038 3.962 23 N -0.897 5.897 24 Si 1.034 2.966 25 H -0.284 1.284 26 H -0.286 1.286 27 H -0.279 1.279 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.138 0.862 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.099 0.901 40 H 0.051 0.949 41 H 0.077 0.923 42 H 0.062 0.938 43 H 0.005 0.995 44 H 0.054 0.946 45 H 0.018 0.982 46 H 0.053 0.947 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.940 -6.025 -23.644 24.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 N -0.353 5.353 4 C 0.033 3.967 5 C -0.078 4.078 6 C -0.120 4.120 7 C -0.110 4.110 8 C -0.172 4.172 9 C 0.071 3.929 10 F -0.122 7.122 11 C -0.162 4.162 12 C 0.308 3.692 13 O -0.386 6.386 14 C -0.100 4.100 15 N -0.236 5.236 16 C -0.111 4.111 17 C 0.085 3.915 18 H 0.006 0.994 19 C -0.199 4.199 20 C -0.635 4.635 21 H 0.085 0.915 22 C -0.169 4.169 23 N -0.530 5.530 24 Si 0.862 3.138 25 H -0.210 1.210 26 H -0.212 1.212 27 H -0.205 1.205 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.156 0.844 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.117 0.883 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.023 0.977 44 H 0.073 0.927 45 H 0.036 0.964 46 H 0.072 0.928 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.778 -6.129 -22.397 23.288 hybrid contribution -0.155 0.129 -1.366 1.381 sum -1.933 -6.000 -23.763 24.585 Atomic orbital electron populations 1.22226 0.95780 1.02376 1.02663 1.21569 0.94428 0.82483 1.03404 1.48126 1.67418 1.14529 1.05261 1.20268 0.91097 0.99648 0.85638 1.20142 0.97046 0.94290 0.96298 1.21377 0.92253 0.99932 0.98460 1.21088 0.96971 0.96672 0.96249 1.21176 0.99185 0.95884 1.00918 1.17660 0.93999 0.86412 0.94842 1.91490 1.93965 1.54263 1.72459 1.20988 0.95040 0.99327 1.00894 1.20979 0.76398 0.86819 0.84981 1.90627 1.43569 1.17655 1.86756 1.22109 1.00157 0.97333 0.90389 1.61787 1.50794 1.08393 1.02578 1.22315 0.92050 0.94460 1.02259 1.19600 0.92617 0.92657 0.86614 0.99368 1.22194 1.00881 0.97083 0.99727 1.21882 1.51990 0.98875 0.90735 0.91527 1.25609 0.97010 1.01474 0.92779 1.70833 1.20948 1.24367 1.36817 0.84177 0.76806 0.76522 0.76304 1.21012 1.21219 1.20526 0.91400 0.92089 0.92378 0.90545 0.90003 0.89756 0.88620 0.84408 0.84883 0.84920 0.85049 0.88280 0.93163 0.90410 0.91891 0.97664 0.92680 0.96356 0.92819 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 10.24 37.16 0.38 -0.96 16 2 C 0.10 0.92 5.93 -4.04 -0.02 0.89 16 3 N -0.62 -7.15 2.46 -175.06 -0.43 -7.58 16 4 C 0.16 1.56 5.53 -5.19 -0.03 1.53 16 5 C -0.08 -0.81 5.46 -104.64 -0.57 -1.38 16 6 C -0.10 -1.18 9.70 -39.58 -0.38 -1.56 16 7 C -0.09 -0.94 10.04 -39.60 -0.40 -1.34 16 8 C -0.15 -1.52 10.03 -39.52 -0.40 -1.92 16 9 C 0.09 0.96 7.30 -39.42 -0.29 0.67 16 10 F -0.14 -1.59 17.27 2.25 0.04 -1.55 16 11 C -0.14 -1.40 9.68 -39.52 -0.38 -1.79 16 12 C 0.52 8.20 7.37 -10.99 -0.08 8.12 16 13 O -0.51 -9.65 13.46 5.56 0.07 -9.58 16 14 C 0.03 0.54 3.81 -4.98 -0.02 0.52 16 15 N -0.51 -11.10 4.36 -237.74 -1.04 -12.14 16 16 C 0.04 0.79 8.89 60.07 0.53 1.32 16 17 C 0.19 4.59 1.66 -68.87 -0.11 4.48 16 18 H -0.01 -0.26 6.70 -51.93 -0.35 -0.61 16 19 C -0.14 -3.10 8.47 37.16 0.31 -2.79 16 20 C -0.60 -16.75 7.98 -34.44 -0.27 -17.02 16 21 H 0.07 2.05 6.88 -52.48 -0.36 1.69 16 22 C 0.04 1.08 5.15 -17.82 -0.09 0.99 16 23 N -0.90 -27.31 13.70 55.43 0.76 -26.55 16 24 Si 1.03 24.79 26.49 -169.99 -4.50 20.29 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.28 -6.19 6.30 56.52 0.36 -5.83 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.57 7.22 -51.93 -0.37 0.20 16 30 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 31 H 0.08 0.53 8.07 -51.93 -0.42 0.12 16 32 H 0.08 0.75 6.44 -51.93 -0.33 0.41 16 33 H 0.08 0.61 8.02 -51.93 -0.42 0.20 16 34 H 0.10 1.06 7.36 -51.93 -0.38 0.68 16 35 H 0.14 1.76 7.61 -52.48 -0.40 1.36 16 36 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 37 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 39 H 0.10 1.59 5.26 -51.93 -0.27 1.32 16 40 H 0.05 0.78 7.16 -51.93 -0.37 0.41 16 41 H 0.08 1.82 6.34 -51.93 -0.33 1.49 16 42 H 0.06 1.27 5.82 -51.93 -0.30 0.97 16 43 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 44 H 0.05 1.26 5.67 -51.93 -0.29 0.97 16 45 H 0.02 0.33 6.64 -51.93 -0.34 -0.02 16 46 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.27 8.27 8.73 -40.82 -0.36 7.91 16 LS Contribution 376.15 15.07 5.67 5.67 Total: -1.00 -32.30 376.15 -8.36 -40.66 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -7.11 Total: 1.02 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -1.82 Total: -10.24 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: -0.71 Total: -46.27 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.07 Total: -9.58 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 24.79 SS G_CDS: -4.50 Total: 20.29 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.30 -8.36 -40.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161796098.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.123 kcal (2) G-P(sol) polarization free energy of solvation -32.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds