Wall clock time and date at job start Sat Apr 11 2020 00:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47507 * 2 1 4 4 C 1.50705 * 109.47339 * 120.00111 * 2 1 3 5 5 H 1.08000 * 119.99813 * 119.99763 * 4 2 1 6 6 C 1.37882 * 119.99959 * 300.00076 * 4 2 1 7 7 N 1.31509 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 119.99928 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47275 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47362 * 120.00171 * 8 6 4 11 11 H 1.48506 * 109.47206 * 240.00269 * 8 6 4 12 12 N 1.46898 * 109.47350 * 239.99910 * 2 1 3 13 13 C 1.46898 * 111.00214 * 306.05079 * 12 2 1 14 14 C 1.46904 * 110.99726 * 69.99919 * 12 2 1 15 15 C 1.50697 * 109.47073 * 170.00117 * 14 12 2 16 16 O 1.21281 * 120.00192 * 359.97438 * 15 14 12 17 17 N 1.34776 * 119.99871 * 180.02562 * 15 14 12 18 18 C 1.46510 * 120.00273 * 0.02562 * 17 15 14 19 19 C 1.46508 * 120.00161 * 180.02562 * 17 15 14 20 20 H 1.09000 * 109.46733 * 20.77065 * 19 17 15 21 21 C 1.52992 * 109.47221 * 140.77340 * 19 17 15 22 22 C 1.50703 * 109.46757 * 260.77477 * 19 17 15 23 23 C 1.38250 * 119.97673 * 335.59665 * 22 19 17 24 24 C 1.38195 * 120.02468 * 179.73059 * 23 22 19 25 25 C 1.38464 * 119.97328 * 0.52401 * 24 23 22 26 26 F 1.35096 * 120.02488 * 179.73039 * 25 24 23 27 27 C 1.38456 * 119.94909 * 359.74683 * 25 24 23 28 28 C 1.38195 * 119.97309 * 0.02562 * 27 25 24 29 29 H 1.09003 * 109.47243 * 299.99731 * 1 2 3 30 30 H 1.08998 * 109.47006 * 59.99819 * 1 2 3 31 31 H 1.08996 * 109.47045 * 180.02562 * 1 2 3 32 32 H 0.96998 * 120.00355 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.47186 * 183.95423 * 13 12 2 34 34 H 1.09004 * 109.46541 * 303.94703 * 13 12 2 35 35 H 1.08998 * 109.47146 * 63.94573 * 13 12 2 36 36 H 1.09004 * 109.47213 * 50.00414 * 14 12 2 37 37 H 1.09001 * 109.47097 * 290.00444 * 14 12 2 38 38 H 1.09007 * 109.46725 * 264.44291 * 18 17 15 39 39 H 1.08997 * 109.47424 * 144.44127 * 18 17 15 40 40 H 1.09002 * 109.46603 * 24.44044 * 18 17 15 41 41 H 1.09000 * 109.47491 * 60.00190 * 21 19 17 42 42 H 1.09002 * 109.47036 * 180.02562 * 21 19 17 43 43 H 1.08995 * 109.47204 * 299.99934 * 21 19 17 44 44 H 1.08003 * 119.98332 * 359.97438 * 23 22 19 45 45 H 1.08002 * 120.01185 * 180.25080 * 24 23 22 46 46 H 1.08000 * 120.01501 * 179.97438 * 27 25 24 47 47 H 1.08009 * 119.98374 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4828 7 7 0.9436 0.8301 2.6035 8 14 2.3214 -1.1204 4.0079 9 1 3.1455 -2.2878 3.6037 10 1 3.1466 -0.1875 4.8165 11 1 1.1661 -1.5869 4.8161 12 7 2.0197 -0.6925 -1.1994 13 6 1.4343 -2.0354 -1.3079 14 6 1.7529 0.0973 -2.4090 15 6 2.4774 -0.5162 -3.5794 16 8 3.1501 -1.5129 -3.4213 17 7 2.3785 0.0433 -4.8015 18 6 1.5672 1.2483 -4.9921 19 6 3.0824 -0.5534 -5.9395 20 1 3.3137 -1.5952 -5.7178 21 6 2.1942 -0.4815 -7.1831 22 6 4.3615 0.2026 -6.1913 23 6 4.4791 1.5175 -5.7806 24 6 5.6537 2.2099 -6.0060 25 6 6.7090 1.5897 -6.6532 26 9 7.8557 2.2674 -6.8790 27 6 6.5880 0.2746 -7.0691 28 6 5.4142 -0.4173 -6.8383 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 0.7089 1.1613 3.4844 33 1 1.8664 -2.5520 -2.1649 34 1 1.6466 -2.5987 -0.3991 35 1 0.3556 -1.9520 -1.4399 36 1 2.1025 1.1190 -2.2603 37 1 0.6813 0.1054 -2.6087 38 1 0.5723 0.9657 -5.3365 39 1 2.0399 1.8908 -5.7350 40 1 1.4858 1.7847 -4.0467 41 1 1.9629 0.5603 -7.4048 42 1 2.7177 -0.9259 -8.0296 43 1 1.2691 -1.0283 -7.0009 44 1 3.6542 2.0023 -5.2798 45 1 5.7467 3.2358 -5.6815 46 1 7.4104 -0.2100 -7.5744 47 1 5.3196 -1.4430 -7.1630 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161867070.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:58 Heat of formation + Delta-G solvation = -30.860752 kcal Electronic energy + Delta-G solvation = -27707.043821 eV Core-core repulsion = 23805.276706 eV Total energy + Delta-G solvation = -3901.767116 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.04833 -40.44464 -38.94649 -36.89242 -35.78635 -32.86400 -32.39993 -31.27566 -29.38462 -28.92421 -27.34148 -27.15614 -25.21228 -24.32187 -23.28221 -23.20246 -21.24347 -19.57073 -18.74790 -17.90795 -17.18530 -16.56201 -16.44907 -16.00182 -15.74789 -15.51152 -15.16417 -14.79332 -14.50169 -14.07673 -13.88186 -13.74099 -13.61233 -13.32456 -13.20889 -12.85124 -12.73539 -12.63033 -12.51184 -12.32442 -12.23975 -11.73754 -11.57803 -11.31057 -11.11576 -11.01430 -10.90083 -10.77049 -10.69278 -10.43525 -10.06224 -9.96542 -9.32503 -9.28179 -8.87269 -8.75377 -8.65737 -8.37584 -7.12584 -6.00305 -4.02703 0.92970 1.03570 2.91524 2.95466 3.32349 3.38767 3.40189 3.46604 4.07627 4.42199 4.44084 4.52594 4.66554 4.73736 4.90744 4.96668 5.04622 5.08474 5.17758 5.20491 5.28071 5.32506 5.36838 5.53081 5.65212 5.69908 5.75326 5.79146 5.83974 5.89313 5.92463 6.05137 6.21658 6.35445 6.43343 6.59118 6.67659 6.68543 6.80600 6.98573 7.08464 7.34713 7.48458 7.70105 7.86620 8.10966 8.37113 8.47537 8.60733 9.04302 9.62275 11.07193 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016151 B = 0.002928 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.201254 B = 9560.888970 C =10328.689827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.211 3.789 3 H 0.038 0.962 4 C -0.495 4.495 5 H 0.064 0.936 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.518 5.518 13 C 0.032 3.968 14 C 0.040 3.960 15 C 0.518 3.482 16 O -0.513 6.513 17 N -0.622 5.622 18 C 0.069 3.931 19 C 0.180 3.820 20 H 0.107 0.893 21 C -0.154 4.154 22 C -0.098 4.098 23 C -0.086 4.086 24 C -0.151 4.151 25 C 0.091 3.909 26 F -0.143 7.143 27 C -0.152 4.152 28 C -0.082 4.082 29 H 0.089 0.911 30 H 0.005 0.995 31 H 0.033 0.967 32 H 0.259 0.741 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.010 0.990 36 H 0.094 0.906 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.138 0.862 45 H 0.135 0.865 46 H 0.134 0.866 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.500 2.334 -22.685 22.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.105 3.895 3 H 0.056 0.944 4 C -0.533 4.533 5 H 0.083 0.917 6 C -0.144 4.144 7 N -0.537 5.537 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.241 5.241 13 C -0.117 4.117 14 C -0.092 4.092 15 C 0.306 3.694 16 O -0.386 6.386 17 N -0.359 5.359 18 C -0.074 4.074 19 C 0.076 3.924 20 H 0.125 0.875 21 C -0.211 4.211 22 C -0.100 4.100 23 C -0.104 4.104 24 C -0.170 4.170 25 C 0.072 3.928 26 F -0.121 7.121 27 C -0.171 4.171 28 C -0.101 4.101 29 H 0.108 0.892 30 H 0.024 0.976 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.028 0.972 36 H 0.112 0.888 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.155 0.845 45 H 0.152 0.848 46 H 0.152 0.848 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.339 1.862 -22.378 22.703 hybrid contribution -0.405 0.060 0.766 0.869 sum 2.934 1.922 -21.612 21.895 Atomic orbital electron populations 1.22422 1.00773 0.99575 1.00412 1.19372 0.89751 0.94434 0.85948 0.94401 1.21150 1.30255 1.12477 0.89442 0.91743 1.24916 0.95269 0.95169 0.98998 1.69884 1.37336 1.23174 1.23279 0.86452 0.78523 0.79749 0.82792 1.19663 1.21072 1.21213 1.62099 1.59113 1.02353 1.00577 1.22354 0.95254 0.91543 1.02524 1.21961 0.97603 0.98841 0.90776 1.21111 0.81064 0.84039 0.83152 1.90641 1.39559 1.25031 1.83400 1.48014 1.50429 1.29194 1.08230 1.21954 0.95136 0.87144 1.03147 1.19797 0.88345 0.97968 0.86248 0.87545 1.22089 0.99850 1.02821 0.96370 1.20362 0.96360 0.94695 0.98552 1.21128 0.97370 0.93874 0.97988 1.21172 0.93142 1.01402 1.01250 1.17745 0.82874 0.91133 1.01040 1.91491 1.47864 1.79941 1.92851 1.21092 0.99557 0.93195 1.03214 1.20809 0.91721 0.99894 0.97669 0.89215 0.97634 0.94836 0.93107 0.92072 0.90922 0.97169 0.88780 0.92887 0.92371 0.91022 0.90185 0.91863 0.91174 0.91525 0.84453 0.84757 0.84784 0.84940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 8.22 37.15 0.31 -3.75 16 2 C 0.21 5.26 2.31 -68.87 -0.16 5.10 16 3 H 0.04 1.02 7.93 -51.93 -0.41 0.61 16 4 C -0.49 -13.70 7.91 -34.44 -0.27 -13.97 16 5 H 0.06 1.83 7.12 -52.49 -0.37 1.46 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 7 N -0.90 -25.32 11.32 55.43 0.63 -24.69 16 8 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 N -0.52 -11.48 4.44 -237.73 -1.06 -12.54 16 13 C 0.03 0.67 8.34 60.06 0.50 1.17 16 14 C 0.04 0.70 3.49 -4.98 -0.02 0.68 16 15 C 0.52 8.50 7.40 -10.99 -0.08 8.42 16 16 O -0.51 -10.32 13.76 5.56 0.08 -10.24 16 17 N -0.62 -7.38 2.30 -175.25 -0.40 -7.78 16 18 C 0.07 0.58 7.83 59.85 0.47 1.05 16 19 C 0.18 1.89 2.78 -69.08 -0.19 1.70 16 20 H 0.11 1.31 7.15 -51.93 -0.37 0.94 16 21 C -0.15 -1.13 8.79 37.15 0.33 -0.81 16 22 C -0.10 -1.04 5.06 -104.61 -0.53 -1.57 16 23 C -0.09 -0.90 8.87 -39.59 -0.35 -1.25 16 24 C -0.15 -1.60 10.03 -39.51 -0.40 -1.99 16 25 C 0.09 1.02 7.30 -39.42 -0.29 0.73 16 26 F -0.14 -1.68 17.27 2.25 0.04 -1.65 16 27 C -0.15 -1.51 10.03 -39.52 -0.40 -1.91 16 28 C -0.08 -0.80 9.72 -39.60 -0.38 -1.19 16 29 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 30 H 0.00 0.10 6.91 -51.93 -0.36 -0.26 16 31 H 0.03 0.77 6.42 -51.93 -0.33 0.44 16 32 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.06 1.26 5.88 -51.93 -0.31 0.95 16 34 H 0.07 1.64 6.76 -51.93 -0.35 1.29 16 35 H 0.01 0.20 6.46 -51.93 -0.34 -0.13 16 36 H 0.09 1.55 7.21 -51.93 -0.37 1.17 16 37 H 0.05 0.86 7.02 -51.93 -0.36 0.50 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.47 5.59 -51.93 -0.29 0.18 16 40 H 0.08 0.68 6.24 -51.93 -0.32 0.35 16 41 H 0.06 0.41 6.99 -51.93 -0.36 0.05 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.14 1.30 4.71 -52.48 -0.25 1.05 16 45 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 46 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 47 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 LS Contribution 368.72 15.07 5.56 5.56 Total: -1.00 -31.97 368.72 -8.53 -40.50 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -6.79 Total: 0.39 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -1.56 Total: -6.12 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: -0.83 Total: -45.01 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.97 -8.53 -40.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161867070.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.640 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds