Wall clock time and date at job start Sat Apr 11 2020 00:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47337 * 2 1 4 4 C 1.53000 * 109.46907 * 240.00201 * 2 1 3 5 5 N 1.46500 * 109.47450 * 59.99922 * 4 2 1 6 6 C 1.34774 * 120.00230 * 179.97438 * 5 4 2 7 7 O 1.21581 * 120.00012 * 0.02562 * 6 5 4 8 8 N 1.34783 * 120.00073 * 180.02562 * 6 5 4 9 9 C 1.46492 * 120.00103 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47110 * 180.02562 * 9 8 6 11 11 C 1.52994 * 109.47142 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47368 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99872 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00373 * 179.97438 * 12 11 10 15 15 N 1.31519 * 120.00211 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00200 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47233 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47458 * 120.00278 * 16 14 12 19 19 H 1.48500 * 109.47164 * 240.00552 * 16 14 12 20 20 C 1.50699 * 109.47089 * 120.00547 * 2 1 3 21 21 C 1.38219 * 120.00977 * 239.99414 * 20 2 1 22 22 C 1.38227 * 120.02402 * 179.74165 * 21 20 2 23 23 C 1.38262 * 120.05195 * 0.25898 * 22 21 20 24 24 C 1.38177 * 120.02487 * 359.97438 * 23 22 21 25 25 C 1.38438 * 120.01661 * 60.25185 * 20 2 1 26 26 F 1.35104 * 120.02404 * 359.97438 * 25 20 2 27 27 H 1.09001 * 109.46998 * 299.99917 * 1 2 3 28 28 H 1.09004 * 109.46878 * 59.99777 * 1 2 3 29 29 H 1.08997 * 109.47364 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47351 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47318 * 299.99953 * 3 2 1 32 32 H 1.09001 * 109.47009 * 60.00090 * 3 2 1 33 33 H 1.09001 * 109.47645 * 180.02562 * 4 2 1 34 34 H 1.09007 * 109.47538 * 299.99803 * 4 2 1 35 35 H 0.97004 * 119.99600 * 0.02562 * 5 4 2 36 36 H 0.96998 * 119.99621 * 359.97438 * 8 6 5 37 37 H 1.09003 * 109.46904 * 299.99278 * 9 8 6 38 38 H 1.08989 * 109.47421 * 59.99658 * 9 8 6 39 39 H 1.09000 * 109.46715 * 299.99613 * 10 9 8 40 40 H 1.08999 * 109.47710 * 59.99423 * 10 9 8 41 41 H 1.09000 * 109.46996 * 299.99437 * 11 10 9 42 42 H 1.09002 * 109.47600 * 59.99586 * 11 10 9 43 43 H 0.96994 * 120.00334 * 179.97438 * 15 14 12 44 44 H 1.08002 * 119.99072 * 0.02773 * 21 20 2 45 45 H 1.07998 * 119.97011 * 180.23492 * 22 21 20 46 46 H 1.08004 * 119.99089 * 179.97438 * 23 22 21 47 47 H 1.07999 * 120.01221 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.5516 -0.0306 -2.4455 6 6 1.8776 -0.4908 -3.6696 7 8 2.5766 -1.4793 -3.7812 8 7 1.4287 0.1449 -4.7700 9 6 1.7826 -0.3555 -6.1006 10 6 1.1504 0.5407 -7.1673 11 6 1.5194 0.0177 -8.5569 12 6 0.8963 0.9001 -9.6077 13 1 0.2972 1.7493 -9.3137 14 6 1.0916 0.6239 -10.9443 15 7 1.8215 -0.4099 -11.3024 16 14 0.3198 1.7181 -12.2467 17 1 -0.4474 2.8058 -11.5882 18 1 1.3873 2.3086 -13.0934 19 1 -0.5939 0.9103 -13.0939 20 6 2.0323 -0.7105 1.2304 21 6 2.8271 -0.0391 2.1403 22 6 3.2836 -0.6890 3.2717 23 6 2.9503 -2.0127 3.4918 24 6 2.1599 -2.6873 2.5811 25 6 1.7024 -2.0374 1.4470 26 9 0.9295 -2.6961 0.5559 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 3.1300 -0.7217 -1.2492 34 1 1.6767 -1.7490 -1.2494 35 1 0.9943 0.7583 -2.3564 36 1 0.8708 0.9334 -4.6810 37 1 2.8665 -0.3472 -6.2155 38 1 1.4128 -1.3743 -6.2158 39 1 0.0665 0.5328 -7.0526 40 1 1.5205 1.5595 -7.0520 41 1 2.6033 0.0252 -8.6719 42 1 1.1489 -1.0009 -8.6721 43 1 1.9586 -0.6044 -12.2426 44 1 3.0877 0.9950 1.9697 45 1 3.9014 -0.1624 3.9840 46 1 3.3079 -2.5196 4.3759 47 1 1.8994 -3.7211 2.7534 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170881264.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:07 Heat of formation + Delta-G solvation = -72.190419 kcal Electronic energy + Delta-G solvation = -26429.711597 eV Core-core repulsion = 22526.152292 eV Total energy + Delta-G solvation = -3903.559305 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -49.26237 -40.34817 -39.48784 -37.24785 -35.31225 -33.63548 -33.15921 -31.18851 -30.96220 -30.04966 -27.83731 -27.28618 -25.97915 -23.63040 -22.78433 -22.75801 -20.80677 -20.35760 -19.88103 -18.34374 -17.76255 -16.88031 -16.47878 -16.12680 -16.04484 -15.72784 -15.54477 -14.78425 -14.64030 -14.59944 -14.42831 -14.34928 -13.80366 -13.71323 -13.60421 -13.52897 -12.77287 -12.62749 -12.38737 -12.26875 -12.22035 -11.96217 -11.77797 -11.64339 -11.40386 -11.26861 -10.96189 -10.90005 -10.69508 -10.54804 -10.06119 -9.83217 -9.43481 -9.38816 -9.12860 -9.09000 -9.03306 -8.53871 -8.35588 -5.99986 -4.02954 0.72842 0.78402 2.84947 3.17375 3.31042 3.38450 3.41976 3.44272 3.87158 4.03573 4.21139 4.42767 4.43830 4.47206 4.51441 4.59431 4.73718 4.83358 4.94122 5.19942 5.32917 5.35135 5.35744 5.41158 5.50043 5.56720 5.61545 5.65070 5.71464 5.75461 5.85418 5.85768 5.86426 5.97882 6.01365 6.22514 6.44709 6.50146 6.57862 6.66229 6.84961 7.05971 7.11995 7.66570 7.79499 7.99285 8.20567 8.40219 8.81930 9.04048 9.61090 11.11341 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.034139 B = 0.001828 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.974725 B =15313.628559 C =15581.972100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.034 4.034 3 C -0.145 4.145 4 C 0.148 3.852 5 N -0.748 5.748 6 C 0.700 3.300 7 O -0.592 6.592 8 N -0.742 5.742 9 C 0.135 3.865 10 C -0.120 4.120 11 C 0.023 3.977 12 C -0.521 4.521 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.103 4.103 21 C -0.089 4.089 22 C -0.130 4.130 23 C -0.094 4.094 24 C -0.153 4.153 25 C 0.106 3.894 26 F -0.132 7.132 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.393 0.607 36 H 0.393 0.607 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.260 0.740 44 H 0.138 0.862 45 H 0.129 0.871 46 H 0.131 0.869 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.241 2.087 34.230 34.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.034 4.034 3 C -0.202 4.202 4 C 0.023 3.977 5 N -0.406 5.406 6 C 0.399 3.601 7 O -0.470 6.470 8 N -0.396 5.396 9 C 0.012 3.988 10 C -0.158 4.158 11 C -0.015 4.015 12 C -0.559 4.559 13 H 0.074 0.926 14 C -0.146 4.146 15 N -0.532 5.532 16 Si 0.721 3.279 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.105 4.105 21 C -0.107 4.107 22 C -0.148 4.148 23 C -0.113 4.113 24 C -0.172 4.172 25 C 0.087 3.913 26 F -0.110 7.110 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.228 0.772 36 H 0.226 0.774 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.070 0.930 44 H 0.155 0.845 45 H 0.147 0.853 46 H 0.149 0.851 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.455 1.027 33.900 33.919 hybrid contribution -1.020 1.083 -0.842 1.709 sum -0.565 2.109 33.058 33.130 Atomic orbital electron populations 1.21958 0.92787 1.03363 1.02212 1.19684 0.96649 0.95669 0.91423 1.21981 1.01697 0.94062 1.02436 1.21216 0.98958 0.96118 0.81373 1.45100 1.57534 1.33509 1.04416 1.15999 0.80589 0.83105 0.80369 1.90921 1.42695 1.27488 1.85921 1.45370 1.56024 1.32604 1.05647 1.21498 1.00124 0.98411 0.78767 1.21885 0.99480 0.98123 0.96309 1.19037 0.97189 0.96688 0.88553 1.21245 1.31523 1.12182 0.90988 0.92607 1.25039 0.95345 0.95362 0.98805 1.69978 1.39138 1.27522 1.16611 0.86526 0.79075 0.80587 0.81725 1.19788 1.21025 1.21015 1.19740 1.00403 0.92576 0.97742 1.21115 0.95866 1.00559 0.93190 1.21232 1.00716 0.94980 0.97892 1.21039 0.96820 0.94604 0.98788 1.21186 1.00670 1.01252 0.94112 1.17587 0.94346 0.90450 0.88937 1.91495 1.72355 1.80666 1.66496 0.92115 0.91790 0.91401 0.91695 0.91773 0.91759 0.91614 0.90805 0.77235 0.77419 0.92000 0.91987 0.92793 0.92795 0.96231 0.96221 0.92997 0.84463 0.85300 0.85083 0.84684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.09 37.16 0.30 -0.79 16 2 C -0.03 -0.27 0.51 -155.66 -0.08 -0.34 16 3 C -0.14 -0.87 6.96 37.15 0.26 -0.61 16 4 C 0.15 1.65 4.35 -4.04 -0.02 1.63 16 5 N -0.75 -8.56 4.96 -65.22 -0.32 -8.89 16 6 C 0.70 11.22 8.57 -86.91 -0.74 10.47 16 7 O -0.59 -12.26 16.34 5.29 0.09 -12.17 16 8 N -0.74 -11.15 5.56 -65.23 -0.36 -11.51 16 9 C 0.14 2.49 5.67 -4.04 -0.02 2.46 16 10 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 11 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 12 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 13 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 16 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 C -0.10 -0.83 4.76 -104.56 -0.50 -1.33 16 21 C -0.09 -0.57 8.97 -39.59 -0.36 -0.93 16 22 C -0.13 -0.72 10.04 -39.58 -0.40 -1.12 16 23 C -0.09 -0.55 10.04 -39.59 -0.40 -0.94 16 24 C -0.15 -1.13 10.03 -39.52 -0.40 -1.53 16 25 C 0.11 0.97 6.79 -39.42 -0.27 0.70 16 26 F -0.13 -1.43 13.38 2.25 0.03 -1.40 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.43 6.86 -51.93 -0.36 0.08 16 29 H 0.07 0.60 6.33 -51.93 -0.33 0.27 16 30 H 0.06 0.40 7.51 -51.93 -0.39 0.01 16 31 H 0.06 0.37 6.86 -51.93 -0.36 0.01 16 32 H 0.06 0.30 7.51 -51.93 -0.39 -0.09 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.97 6.29 -51.92 -0.33 0.65 16 35 H 0.39 3.32 6.18 -40.82 -0.25 3.06 16 36 H 0.39 4.65 8.49 -40.82 -0.35 4.31 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.14 0.64 5.90 -52.49 -0.31 0.33 16 45 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 46 H 0.13 0.45 8.06 -52.48 -0.42 0.03 16 47 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 381.28 15.07 5.75 5.75 Total: -1.00 -34.43 381.28 -9.66 -44.09 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -7.25 Total: 1.72 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -3.31 Total: -7.89 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.05 Total: -46.71 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.09 Total: -12.17 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.03 Total: -1.40 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.43 -9.66 -44.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170881264.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.098 kcal (2) G-P(sol) polarization free energy of solvation -34.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds