Wall clock time and date at job start Sat Apr 11 2020 00:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35936 * 116.99854 * 2 1 4 4 C 1.38729 * 120.03656 * 0.19302 * 3 2 1 5 5 C 1.38124 * 119.97347 * 180.26697 * 4 3 2 6 6 C 1.38472 * 120.03273 * 359.77608 * 5 4 3 7 7 F 1.35097 * 119.97619 * 179.97438 * 6 5 4 8 8 C 1.38437 * 120.05829 * 359.97438 * 6 5 4 9 9 C 1.38175 * 120.03088 * 0.02562 * 8 6 5 10 10 C 1.50701 * 120.01629 * 179.97438 * 9 8 6 11 11 N 1.46896 * 109.47034 * 259.99518 * 10 9 8 12 12 C 1.46948 * 111.00183 * 190.00084 * 11 10 9 13 13 C 1.53049 * 109.36764 * 183.19149 * 12 11 10 14 14 N 1.46961 * 109.36177 * 301.59566 * 13 12 11 15 15 C 1.46896 * 111.00124 * 183.18463 * 14 13 12 16 16 C 1.52996 * 109.47256 * 170.00033 * 15 14 13 17 17 C 1.50702 * 109.47159 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 15 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48501 * 109.47188 * 90.00793 * 21 19 17 23 23 H 1.48501 * 109.47085 * 210.00372 * 21 19 17 24 24 H 1.48498 * 109.47634 * 330.00608 * 21 19 17 25 25 C 1.46956 * 110.87704 * 59.32220 * 14 13 12 26 26 C 1.46963 * 111.00029 * 313.80264 * 11 10 9 27 27 H 1.08996 * 109.47699 * 59.99935 * 1 2 3 28 28 H 1.08997 * 109.47511 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47208 * 299.99716 * 1 2 3 30 30 H 1.08010 * 120.00939 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.98298 * 179.74360 * 5 4 3 32 32 H 1.08004 * 119.98599 * 179.97438 * 8 6 5 33 33 H 1.09004 * 109.47047 * 139.99423 * 10 9 8 34 34 H 1.09003 * 109.47035 * 19.99617 * 10 9 8 35 35 H 1.08999 * 109.48998 * 63.22220 * 12 11 10 36 36 H 1.09000 * 109.50650 * 303.16557 * 12 11 10 37 37 H 1.09001 * 109.49268 * 181.63226 * 13 12 11 38 38 H 1.09000 * 109.49067 * 61.56179 * 13 12 11 39 39 H 1.09004 * 109.46774 * 50.00232 * 15 14 13 40 40 H 1.09000 * 109.47723 * 290.00621 * 15 14 13 41 41 H 1.09004 * 109.47066 * 60.00378 * 16 15 14 42 42 H 1.08994 * 109.47405 * 300.00209 * 16 15 14 43 43 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.49195 * 60.64478 * 25 14 13 45 45 H 1.09002 * 109.48564 * 180.71036 * 25 14 13 46 46 H 1.09000 * 109.48524 * 296.77653 * 26 11 10 47 47 H 1.09001 * 109.48867 * 56.84120 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2913 2.3751 0.0040 5 6 1.9196 3.6052 -0.0015 6 6 3.3025 3.6770 -0.0065 7 9 3.9159 4.8806 -0.0125 8 6 4.0571 2.5163 -0.0053 9 6 3.4311 1.2845 0.0003 10 6 4.2529 0.0213 0.0010 11 7 4.3135 -0.5242 -1.3616 12 6 4.9004 -1.8714 -1.3640 13 6 5.0190 -2.3708 -2.8059 14 7 3.6885 -2.3780 -3.4300 15 6 3.7491 -2.9233 -4.7926 16 6 2.3290 -3.1477 -5.3158 17 6 2.3912 -3.7078 -6.7135 18 1 3.3480 -3.8863 -7.1817 19 6 1.2267 -3.9982 -7.3923 20 7 0.0617 -3.7813 -6.8220 21 14 1.3040 -4.6996 -9.1218 22 1 1.3407 -6.1826 -9.0534 23 1 0.1049 -4.2689 -9.8847 24 1 2.5276 -4.2050 -9.8025 25 6 3.1016 -1.0307 -3.4276 26 6 2.9830 -0.5313 -1.9858 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 0.2126 2.3195 0.0076 31 1 1.3321 4.5114 -0.0026 32 1 5.1356 2.5737 -0.0096 33 1 3.7934 -0.7107 0.6653 34 1 5.2617 0.2443 0.3483 35 1 4.2611 -2.5475 -0.7964 36 1 5.8900 -1.8381 -0.9082 37 1 5.4272 -3.3814 -2.8083 38 1 5.6800 -1.7098 -3.3665 39 1 4.2861 -3.8719 -4.7807 40 1 4.2690 -2.2197 -5.4428 41 1 1.7920 -2.1992 -5.3277 42 1 1.8092 -3.8514 -4.6657 43 1 -0.7576 -3.9853 -7.2997 44 1 3.7409 -0.3545 -3.9952 45 1 2.1120 -1.0644 -3.8833 46 1 2.3220 -1.1923 -1.4251 47 1 2.5748 0.4794 -1.9833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171199498.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:18 Heat of formation + Delta-G solvation = -41.213078 kcal Electronic energy + Delta-G solvation = -27791.097696 eV Core-core repulsion = 23888.881669 eV Total energy + Delta-G solvation = -3902.216026 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.98290 -40.81351 -38.73037 -37.48680 -35.63276 -33.14161 -32.01117 -30.62225 -30.02444 -29.63571 -27.64021 -26.95293 -24.76066 -23.50538 -23.27594 -22.39872 -21.42657 -20.25764 -19.34480 -18.27230 -17.32350 -17.10518 -16.69383 -16.23125 -15.60434 -15.41149 -15.10502 -14.94019 -14.61258 -14.56453 -14.46021 -14.30492 -13.85778 -13.74213 -13.33129 -13.13093 -12.76384 -12.59543 -12.55189 -12.11702 -12.05144 -11.77601 -11.61504 -11.29988 -11.18830 -11.02891 -10.91145 -10.78340 -10.68042 -10.48773 -10.31376 -9.78846 -9.36256 -9.28131 -9.09255 -8.43783 -8.31082 -8.01135 -7.63225 -5.98211 -4.00020 0.86802 0.97828 3.03565 3.24191 3.33034 3.39058 3.42581 4.03467 4.16737 4.34724 4.41709 4.44249 4.60894 4.78270 4.82304 4.99603 5.04990 5.13678 5.22990 5.29260 5.37777 5.39541 5.43111 5.45223 5.59647 5.67170 5.70169 5.79969 5.87052 5.88014 5.90701 6.05930 6.11340 6.21351 6.28911 6.43423 6.46734 6.48391 6.58758 7.01181 7.06327 7.11700 7.19980 7.57180 7.63822 7.83959 7.93446 8.11157 8.46286 9.07187 9.63337 11.13203 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016041 B = 0.002845 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.081170 B = 9838.918504 C =10358.225223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.304 6.304 3 C 0.130 3.870 4 C -0.183 4.183 5 C -0.113 4.113 6 C 0.056 3.944 7 F -0.143 7.143 8 C -0.097 4.097 9 C -0.086 4.086 10 C 0.103 3.897 11 N -0.534 5.534 12 C 0.061 3.939 13 C 0.057 3.943 14 N -0.539 5.539 15 C 0.063 3.937 16 C 0.029 3.971 17 C -0.521 4.521 18 H 0.054 0.946 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.057 3.943 26 C 0.058 3.942 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.054 0.946 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.142 0.858 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.034 0.966 39 H 0.060 0.940 40 H 0.019 0.981 41 H 0.016 0.984 42 H 0.023 0.977 43 H 0.260 0.740 44 H 0.031 0.969 45 H 0.087 0.913 46 H 0.059 0.941 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.376 12.562 18.898 23.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.217 6.217 3 C 0.084 3.916 4 C -0.202 4.202 5 C -0.132 4.132 6 C 0.037 3.963 7 F -0.121 7.121 8 C -0.117 4.117 9 C -0.087 4.087 10 C -0.025 4.025 11 N -0.259 5.259 12 C -0.067 4.067 13 C -0.072 4.072 14 N -0.264 5.264 15 C -0.063 4.063 16 C -0.008 4.008 17 C -0.559 4.559 18 H 0.072 0.928 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.071 4.071 26 C -0.069 4.069 27 H 0.079 0.921 28 H 0.123 0.877 29 H 0.072 0.928 30 H 0.156 0.844 31 H 0.154 0.846 32 H 0.160 0.840 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.061 0.939 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.052 0.948 39 H 0.078 0.922 40 H 0.037 0.963 41 H 0.034 0.966 42 H 0.042 0.958 43 H 0.069 0.931 44 H 0.049 0.951 45 H 0.105 0.895 46 H 0.078 0.922 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.295 12.373 18.858 22.960 hybrid contribution -0.248 0.064 -1.059 1.090 sum 4.047 12.437 17.799 22.087 Atomic orbital electron populations 1.23136 0.78101 1.04675 1.01311 1.86302 1.21626 1.25748 1.87989 1.18853 0.91804 0.84868 0.96101 1.21071 1.00533 0.91229 1.07342 1.20907 0.92700 0.98709 1.00898 1.17513 0.90821 0.80584 1.07381 1.91485 1.83314 1.42952 1.94396 1.20845 1.00754 0.89854 1.00224 1.18986 0.90442 0.95304 1.03972 1.20892 0.98588 0.92181 0.90791 1.62362 1.23762 1.22808 1.17010 1.22139 0.98987 0.88315 0.97271 1.22099 0.91252 1.00026 0.93836 1.62264 1.20516 1.21786 1.21827 1.22312 1.01532 0.97358 0.85126 1.19076 0.89585 0.97140 0.95003 1.21213 0.92365 1.42417 0.99950 0.92823 1.24989 0.95503 0.95801 0.98032 1.69975 0.97198 1.48599 1.37542 0.86602 0.77488 0.79328 0.84620 1.20670 1.21254 1.19923 1.22188 1.00765 0.88919 0.95255 1.22431 0.89036 1.00526 0.94913 0.92146 0.87730 0.92765 0.84352 0.84594 0.83990 0.93191 0.89953 0.93942 0.90930 0.90728 0.94775 0.92190 0.96252 0.96578 0.95833 0.93072 0.95097 0.89518 0.92249 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.18 16 2 O -0.30 -3.41 6.66 -19.54 -0.13 -3.54 16 3 C 0.13 1.43 4.84 -39.23 -0.19 1.24 16 4 C -0.18 -1.73 9.04 -39.44 -0.36 -2.08 16 5 C -0.11 -1.07 10.02 -39.54 -0.40 -1.47 16 6 C 0.06 0.60 7.30 -39.42 -0.29 0.32 16 7 F -0.14 -1.62 17.27 2.25 0.04 -1.58 16 8 C -0.10 -1.02 9.64 -39.53 -0.38 -1.41 16 9 C -0.09 -0.96 4.58 -104.48 -0.48 -1.44 16 10 C 0.10 1.16 5.26 -4.98 -0.03 1.13 16 11 N -0.53 -7.30 4.85 -235.91 -1.14 -8.45 16 12 C 0.06 0.81 5.58 -3.77 -0.02 0.79 16 13 C 0.06 0.88 5.61 -3.77 -0.02 0.86 16 14 N -0.54 -10.20 4.71 -234.47 -1.10 -11.31 16 15 C 0.06 1.38 4.90 -3.83 -0.02 1.36 16 16 C 0.03 0.77 4.91 -27.88 -0.14 0.64 16 17 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 21 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 25 C 0.06 1.04 5.41 -3.77 -0.02 1.01 16 26 C 0.06 0.89 3.99 -3.76 -0.02 0.87 16 27 H 0.06 0.47 7.67 -51.93 -0.40 0.08 16 28 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.34 7.65 -51.93 -0.40 -0.06 16 30 H 0.14 1.00 6.30 -52.48 -0.33 0.67 16 31 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.14 1.28 8.04 -52.48 -0.42 0.86 16 33 H 0.05 0.58 7.80 -51.93 -0.40 0.17 16 34 H 0.08 0.78 8.00 -51.93 -0.42 0.37 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 1.09 8.07 -51.93 -0.42 0.67 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 1.28 8.03 -51.93 -0.42 0.86 16 40 H 0.02 0.42 8.12 -51.93 -0.42 0.00 16 41 H 0.02 0.44 6.49 -51.93 -0.34 0.11 16 42 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.09 1.73 6.34 -51.93 -0.33 1.40 16 46 H 0.06 0.96 6.38 -51.93 -0.33 0.63 16 47 H 0.07 1.04 5.38 -51.93 -0.28 0.76 16 LS Contribution 370.30 15.07 5.58 5.58 Total: -1.00 -31.51 370.30 -10.22 -41.73 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -7.40 Total: -2.39 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -1.77 Total: -10.63 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -1.51 Total: -45.92 kcal Atomic # 8 Polarization: -3.41 SS G_CDS: -0.13 Total: -3.54 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.51 -10.22 -41.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171199498.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.515 kcal (2) G-P(sol) polarization free energy of solvation -31.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds