Wall clock time and date at job start Sat Apr 11 2020 00:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 5 5 N 1.46505 * 109.47212 * 300.00138 * 4 2 1 6 6 C 1.34771 * 119.99622 * 179.97438 * 5 4 2 7 7 O 1.21584 * 120.00541 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99489 * 180.02562 * 6 5 4 9 9 C 1.46505 * 119.99511 * 180.02562 * 8 6 5 10 10 C 1.53007 * 109.46736 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.47013 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.46986 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00338 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00032 * 180.02562 * 12 11 10 15 15 N 1.31522 * 119.99683 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00349 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47376 * 89.99545 * 16 14 12 18 18 H 1.48504 * 109.47164 * 209.99990 * 16 14 12 19 19 H 1.48500 * 109.46711 * 329.99883 * 16 14 12 20 20 C 1.50697 * 109.47239 * 240.00432 * 2 1 3 21 21 C 1.38271 * 119.98398 * 239.72824 * 20 2 1 22 22 C 1.38225 * 120.04939 * 179.72524 * 21 20 2 23 23 C 1.38221 * 120.02381 * 0.54410 * 22 21 20 24 24 C 1.38440 * 119.97562 * 359.72822 * 23 22 21 25 25 F 1.35101 * 120.02738 * 180.02562 * 24 23 22 26 26 C 1.38178 * 119.98847 * 59.99615 * 20 2 1 27 27 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 32 32 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 33 33 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 35 35 H 0.96996 * 119.99606 * 0.02562 * 5 4 2 36 36 H 0.97003 * 120.00377 * 0.02562 * 8 6 5 37 37 H 1.08994 * 109.47121 * 299.99693 * 9 8 6 38 38 H 1.08994 * 109.47503 * 60.00345 * 9 8 6 39 39 H 1.08994 * 109.47144 * 299.99776 * 10 9 8 40 40 H 1.09004 * 109.46808 * 60.00030 * 10 9 8 41 41 H 1.09003 * 109.47122 * 300.00157 * 11 10 9 42 42 H 1.08994 * 109.47425 * 59.99911 * 11 10 9 43 43 H 0.97001 * 119.99498 * 180.02562 * 15 14 12 44 44 H 1.07994 * 119.97648 * 359.97199 * 21 20 2 45 45 H 1.07999 * 119.99063 * 180.26826 * 22 21 20 46 46 H 1.08001 * 120.01062 * 179.74490 * 23 22 21 47 47 H 1.07993 * 120.01307 * 359.97438 * 26 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.5517 -0.0306 2.4454 6 6 1.8769 -0.4914 3.6695 7 8 2.5759 -1.4800 3.7810 8 7 1.4272 0.1436 4.7699 9 6 1.7812 -0.3570 6.1005 10 6 1.1479 0.5385 7.1673 11 6 1.5170 0.0154 8.5569 12 6 0.8928 0.8971 9.6077 13 1 0.2925 1.7454 9.3138 14 6 1.0880 0.6207 10.9443 15 7 1.8187 -0.4126 11.3022 16 14 0.3149 1.7139 12.2468 17 1 -1.0332 1.1954 12.5918 18 1 1.1697 1.7174 13.4611 19 1 0.1936 3.0981 11.7228 20 6 2.0324 -0.7103 -1.2305 21 6 2.8320 -1.8312 -1.1033 22 6 3.2888 -2.4871 -2.2310 23 6 2.9560 -2.0164 -3.4873 24 6 2.1602 -0.8910 -3.6158 25 9 1.8339 -0.4303 -4.8432 26 6 1.6984 -0.2380 -2.4853 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 -0.7208 1.2495 34 1 1.6767 -1.7489 1.2492 35 1 0.9937 0.7578 2.3564 36 1 0.8692 0.9321 4.6810 37 1 1.4121 -1.3761 6.2153 38 1 2.8650 -0.3478 6.2157 39 1 1.5173 1.5575 7.0524 40 1 0.0640 0.5298 7.0523 41 1 1.1472 -1.0035 8.6716 42 1 2.6008 0.0237 8.6722 43 1 1.9557 -0.6072 12.2425 44 1 3.0965 -2.1968 -0.1222 45 1 3.9097 -3.3650 -2.1305 46 1 3.3165 -2.5267 -4.3683 47 1 1.0771 0.6398 -2.5844 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172433895.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:20 Heat of formation + Delta-G solvation = -76.058453 kcal Electronic energy + Delta-G solvation = -25962.435512 eV Core-core repulsion = 22058.708477 eV Total energy + Delta-G solvation = -3903.727035 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.27376 -40.61013 -39.53961 -37.12030 -35.34855 -33.66823 -33.18806 -31.29015 -30.92047 -30.21012 -27.72271 -27.35009 -26.05705 -23.73294 -22.97518 -22.64207 -20.87798 -20.41401 -19.88840 -18.41030 -17.38439 -16.92614 -16.52618 -16.35429 -15.99183 -15.75569 -15.74212 -14.80224 -14.80033 -14.68916 -14.44152 -14.16365 -13.95411 -13.80395 -13.68283 -13.50813 -13.08497 -12.41433 -12.38489 -12.28069 -12.27157 -12.17305 -11.80532 -11.70367 -11.47031 -11.21966 -11.01066 -10.90415 -10.72068 -10.59209 -10.12290 -9.85675 -9.44259 -9.39287 -9.21417 -9.12403 -9.08306 -8.59848 -8.37007 -6.01700 -4.04776 0.73098 0.77535 2.78028 3.14283 3.30618 3.37049 3.37357 3.39730 3.76733 4.04925 4.14511 4.39095 4.46106 4.49687 4.52230 4.58591 4.67190 4.76060 4.94638 5.17038 5.27224 5.29232 5.33587 5.34047 5.48548 5.52831 5.56338 5.63612 5.67181 5.70465 5.76262 5.82008 5.84381 5.90373 6.07452 6.18867 6.41213 6.46412 6.53204 6.62813 6.80210 7.02607 7.06303 7.64088 7.76981 7.97262 8.14115 8.38124 8.75053 9.01925 9.59319 11.09537 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.040108 B = 0.001681 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.942529 B =16651.826303 C =17142.804381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.037 4.037 3 C -0.141 4.141 4 C 0.149 3.851 5 N -0.749 5.749 6 C 0.700 3.300 7 O -0.593 6.593 8 N -0.742 5.742 9 C 0.135 3.865 10 C -0.120 4.120 11 C 0.023 3.977 12 C -0.522 4.522 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.037 4.037 21 C -0.130 4.130 22 C -0.085 4.085 23 C -0.159 4.159 24 C 0.098 3.902 25 F -0.141 7.141 26 C -0.148 4.148 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.394 0.606 36 H 0.393 0.607 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.261 0.739 44 H 0.138 0.862 45 H 0.134 0.866 46 H 0.134 0.866 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.599 0.870 -31.791 31.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.038 4.038 3 C -0.198 4.198 4 C 0.024 3.976 5 N -0.407 5.407 6 C 0.400 3.600 7 O -0.471 6.471 8 N -0.396 5.396 9 C 0.012 3.988 10 C -0.158 4.158 11 C -0.014 4.014 12 C -0.561 4.561 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.532 5.532 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.038 4.038 21 C -0.148 4.148 22 C -0.103 4.103 23 C -0.178 4.178 24 C 0.079 3.921 25 F -0.120 7.120 26 C -0.166 4.166 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.228 0.772 36 H 0.226 0.774 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.071 0.929 44 H 0.155 0.845 45 H 0.152 0.848 46 H 0.152 0.848 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.122 -0.140 -31.546 31.546 hybrid contribution -0.969 1.349 0.418 1.712 sum -0.846 1.209 -31.128 31.163 Atomic orbital electron populations 1.21921 0.92662 1.02874 1.02342 1.19751 0.96622 0.95832 0.91562 1.21923 1.01890 0.93647 1.02343 1.21268 0.99079 0.95611 0.81641 1.45130 1.57569 1.33596 1.04438 1.15993 0.80555 0.83104 0.80370 1.90919 1.42725 1.27533 1.85948 1.45384 1.55925 1.32612 1.05680 1.21508 1.00148 0.98411 0.78740 1.21889 0.99472 0.98146 0.96319 1.19032 0.97194 0.96669 0.88532 1.21203 1.31557 1.12306 0.91000 0.92665 1.25033 0.95310 0.95363 0.98790 1.69972 1.38990 1.27546 1.16716 0.86580 0.79154 0.80913 0.81242 1.20679 1.21210 1.19928 1.19465 0.96184 0.94941 0.93215 1.21373 0.98069 0.95565 0.99833 1.21059 0.98499 0.99461 0.91291 1.21181 1.00529 0.96756 0.99321 1.17671 0.99186 0.95385 0.79852 1.91505 1.91137 1.88364 1.40995 1.20904 1.03035 1.01749 0.90942 0.91775 0.91984 0.91861 0.91862 0.91978 0.91778 0.91186 0.91187 0.77161 0.77377 0.91961 0.91967 0.92781 0.92790 0.96238 0.96223 0.92939 0.84451 0.84773 0.84844 0.84753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 8.11 37.16 0.30 -0.52 16 2 C -0.04 -0.24 0.61 -155.66 -0.10 -0.34 16 3 C -0.14 -0.82 8.11 37.16 0.30 -0.52 16 4 C 0.15 1.33 3.22 -4.04 -0.01 1.32 16 5 N -0.75 -7.46 4.96 -65.22 -0.32 -7.78 16 6 C 0.70 10.29 8.57 -86.92 -0.74 9.55 16 7 O -0.59 -11.34 16.34 5.29 0.09 -11.26 16 8 N -0.74 -10.45 5.56 -65.22 -0.36 -10.81 16 9 C 0.14 2.38 5.67 -4.04 -0.02 2.36 16 10 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 11 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 12 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 13 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 16 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 C -0.04 -0.27 4.76 -104.63 -0.50 -0.76 16 21 C -0.13 -0.94 8.97 -39.57 -0.36 -1.30 16 22 C -0.09 -0.55 10.04 -39.59 -0.40 -0.95 16 23 C -0.16 -1.10 10.03 -39.51 -0.40 -1.50 16 24 C 0.10 0.79 7.30 -39.42 -0.29 0.50 16 25 F -0.14 -1.27 17.27 2.25 0.04 -1.23 16 26 C -0.15 -1.06 8.69 -39.51 -0.34 -1.40 16 27 H 0.06 0.34 6.86 -51.93 -0.36 -0.02 16 28 H 0.06 0.31 7.39 -51.93 -0.38 -0.07 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.31 7.39 -51.93 -0.38 -0.07 16 32 H 0.06 0.34 6.86 -51.93 -0.36 -0.02 16 33 H 0.07 0.69 7.50 -51.93 -0.39 0.30 16 34 H 0.07 0.69 7.53 -51.93 -0.39 0.30 16 35 H 0.39 2.85 6.18 -40.82 -0.25 2.60 16 36 H 0.39 4.34 8.49 -40.82 -0.35 3.99 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.14 0.97 5.89 -52.49 -0.31 0.66 16 45 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 46 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 47 H 0.13 0.79 7.10 -52.49 -0.37 0.42 16 LS Contribution 385.67 15.07 5.81 5.81 Total: -1.00 -33.38 385.67 -9.58 -42.96 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -7.31 Total: 0.84 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -3.24 Total: -8.92 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 0.05 Total: -44.59 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.38 -9.58 -42.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172433895.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.098 kcal (2) G-P(sol) polarization free energy of solvation -33.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds