Wall clock time and date at job start Sat Apr 11 2020 00:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47392 * 2 1 4 4 C 1.52995 * 109.47280 * 239.99895 * 2 1 3 5 5 C 1.50705 * 109.47148 * 60.00166 * 4 2 1 6 6 H 1.08001 * 119.99501 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00204 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99753 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00003 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46982 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47495 * 119.99474 * 9 7 5 12 12 H 1.48503 * 109.47121 * 239.99890 * 9 7 5 13 13 C 1.53008 * 109.47212 * 120.00109 * 2 1 3 14 14 N 1.46905 * 109.46752 * 300.00052 * 13 2 1 15 15 C 1.46902 * 110.99642 * 180.02562 * 14 13 2 16 16 C 1.53116 * 109.52198 * 155.00030 * 15 14 13 17 17 C 1.53040 * 109.27862 * 177.62336 * 16 15 14 18 18 N 1.46851 * 109.51898 * 300.81641 * 17 16 15 19 19 C 1.46896 * 110.99976 * 185.83872 * 18 17 16 20 20 C 1.53005 * 109.47100 * 76.73622 * 19 18 17 21 21 F 1.39893 * 109.47176 * 53.97886 * 20 19 18 22 22 F 1.39902 * 109.47234 * 173.98277 * 20 19 18 23 23 F 1.39907 * 109.47100 * 293.98361 * 20 19 18 24 24 C 1.46845 * 111.19816 * 61.74181 * 18 17 16 25 25 C 1.53035 * 109.52666 * 298.26049 * 24 18 17 26 26 H 1.09009 * 109.46969 * 300.00080 * 1 2 3 27 27 H 1.08994 * 109.46891 * 59.99455 * 1 2 3 28 28 H 1.08995 * 109.47303 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46922 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.46880 * 299.99817 * 3 2 1 31 31 H 1.08998 * 109.46715 * 59.99878 * 3 2 1 32 32 H 1.08998 * 109.47928 * 180.02562 * 4 2 1 33 33 H 1.09006 * 109.47364 * 300.00342 * 4 2 1 34 34 H 0.96998 * 119.99849 * 180.02562 * 8 7 5 35 35 H 1.08993 * 109.47231 * 179.97438 * 13 2 1 36 36 H 1.08995 * 109.47180 * 59.99687 * 13 2 1 37 37 H 1.00905 * 110.99801 * 303.94493 * 14 13 2 38 38 H 1.08996 * 109.52427 * 34.87219 * 15 14 13 39 39 H 1.08996 * 109.50598 * 57.67503 * 16 15 14 40 40 H 1.09000 * 109.53532 * 297.57587 * 16 15 14 41 41 H 1.08996 * 109.46060 * 180.80132 * 17 16 15 42 42 H 1.08999 * 109.45501 * 60.82422 * 17 16 15 43 43 H 1.08993 * 109.47537 * 196.73589 * 19 18 17 44 44 H 1.08999 * 109.47293 * 316.74198 * 19 18 17 45 45 H 1.09004 * 109.46137 * 58.27686 * 24 18 17 46 46 H 1.08998 * 109.46434 * 178.23627 * 24 18 17 47 47 H 1.09004 * 109.49721 * 299.23857 * 25 24 18 48 48 H 1.09000 * 109.50459 * 179.12147 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8704 -0.4822 -3.7320 8 7 2.6265 -1.5515 -3.8526 9 14 1.2484 0.3988 -5.2571 10 1 0.4238 1.5659 -4.8529 11 1 2.4036 0.8647 -6.0655 12 1 0.4226 -0.5340 -6.0654 13 6 2.0400 -0.7213 1.2493 14 7 1.5503 -0.0288 2.4487 15 6 2.0218 -0.6946 3.6704 16 6 2.0558 0.3138 4.8221 17 6 2.4907 -0.3987 6.1048 18 7 1.5479 -1.4831 6.4076 19 6 1.8544 -2.1002 7.7049 20 6 1.3643 -1.1886 8.8318 21 9 0.0101 -0.8957 8.6391 22 9 1.5312 -1.8356 10.0609 23 9 2.1037 -0.0009 8.8257 24 6 1.5331 -2.4882 5.3371 25 6 1.0697 -1.8381 4.0314 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 -0.7217 -1.2491 33 1 1.6766 -1.7490 -1.2492 34 1 2.8608 -1.8829 -4.7336 35 1 3.1300 -0.7217 1.2491 36 1 1.6767 -1.7489 1.2493 37 1 1.8199 0.9436 2.4402 38 1 3.0230 -1.0925 3.5051 39 1 1.0625 0.7405 4.9616 40 1 2.7641 1.1090 4.5896 41 1 2.5021 0.3136 6.9298 42 1 3.4896 -0.8132 5.9690 43 1 1.3539 -3.0659 7.7752 44 1 2.9314 -2.2418 7.7945 45 1 2.5366 -2.8929 5.2051 46 1 0.8492 -3.2936 5.6045 47 1 0.0609 -1.4452 4.1586 48 1 1.0738 -2.5807 3.2336 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174329439.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:23 Heat of formation + Delta-G solvation = -170.557026 kcal Electronic energy + Delta-G solvation = -28300.451375 eV Core-core repulsion = 23974.230139 eV Total energy + Delta-G solvation = -4326.221236 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.193 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.36637 -47.95264 -47.76583 -39.56462 -37.51634 -35.14422 -32.58628 -31.37104 -31.14457 -28.48590 -26.87331 -26.32671 -25.35689 -23.68672 -23.44085 -22.66083 -21.70728 -19.94809 -18.81862 -18.76282 -17.85110 -17.69955 -16.26319 -16.20025 -15.58326 -15.37420 -14.83971 -14.74312 -14.66954 -14.50966 -14.41038 -14.23659 -13.99791 -13.98893 -13.86079 -13.50940 -13.26621 -12.90368 -12.67820 -12.63167 -12.34161 -12.04016 -11.95265 -11.87628 -11.37872 -11.24777 -11.05957 -10.93595 -10.75571 -10.69901 -10.48645 -10.43516 -10.21534 -10.07165 -9.67448 -9.00984 -8.93332 -8.80601 -8.31957 -8.09065 -5.96380 -3.96236 2.38277 3.12749 3.32380 3.40313 3.43917 3.50714 3.69237 4.10314 4.25988 4.49414 4.52351 4.61754 4.71282 4.76707 5.00221 5.04198 5.13174 5.30969 5.39605 5.43684 5.51148 5.57639 5.67684 5.73700 5.81533 5.88373 5.98762 6.06853 6.25049 6.28247 6.35807 6.46248 6.53178 6.56261 6.68029 6.80739 6.84408 7.21888 7.25209 7.27892 7.42571 7.68121 7.71956 7.85898 8.04213 8.48797 9.09442 9.66626 11.15348 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.039615 B = 0.002094 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.635028 B =13367.299502 C =13523.943167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.058 4.058 3 C -0.129 4.129 4 C 0.033 3.967 5 C -0.505 4.505 6 H 0.060 0.940 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.071 3.929 14 N -0.681 5.681 15 C 0.085 3.915 16 C -0.116 4.116 17 C 0.041 3.959 18 N -0.531 5.531 19 C 0.009 3.991 20 C 0.457 3.543 21 F -0.171 7.171 22 F -0.187 7.187 23 F -0.184 7.184 24 C 0.060 3.940 25 C -0.103 4.103 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.038 0.962 29 H 0.039 0.961 30 H 0.064 0.936 31 H 0.033 0.967 32 H 0.012 0.988 33 H 0.014 0.986 34 H 0.258 0.742 35 H 0.021 0.979 36 H 0.065 0.935 37 H 0.339 0.661 38 H 0.037 0.963 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.039 0.961 43 H 0.118 0.882 44 H 0.082 0.918 45 H 0.038 0.962 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.114 -0.804 25.983 25.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.058 4.058 3 C -0.186 4.186 4 C -0.004 4.004 5 C -0.543 4.543 6 H 0.078 0.922 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.057 4.057 14 N -0.313 5.313 15 C -0.025 4.025 16 C -0.154 4.154 17 C -0.087 4.087 18 N -0.256 5.256 19 C -0.122 4.122 20 C 0.403 3.597 21 F -0.153 7.153 22 F -0.168 7.168 23 F -0.165 7.165 24 C -0.067 4.067 25 C -0.142 4.142 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.030 0.970 33 H 0.033 0.967 34 H 0.068 0.932 35 H 0.039 0.961 36 H 0.083 0.917 37 H 0.159 0.841 38 H 0.055 0.945 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.109 0.891 42 H 0.057 0.943 43 H 0.136 0.864 44 H 0.100 0.900 45 H 0.056 0.944 46 H 0.099 0.901 47 H 0.100 0.900 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.117 -1.006 25.879 25.923 hybrid contribution 1.500 0.351 -0.822 1.746 sum 0.383 -0.655 25.058 25.069 Atomic orbital electron populations 1.21591 0.94970 1.00531 1.00181 1.20620 0.95872 0.94946 0.94381 1.21770 0.99613 0.96818 1.00441 1.19131 0.95837 0.95202 0.90276 1.21279 1.30576 1.11877 0.90588 0.92231 1.25025 0.95445 0.95140 0.99089 1.69978 1.37410 1.23263 1.23154 0.86605 0.78580 0.79752 0.83483 1.19764 1.21220 1.21166 1.22142 0.96054 0.98128 0.89415 1.60584 1.63667 1.06203 1.00830 1.21538 0.96093 0.94715 0.90190 1.21748 1.03062 0.97608 0.93031 1.22490 0.92936 0.93754 0.99500 1.61761 1.51388 1.11895 1.00531 1.23190 1.02429 0.97398 0.89160 1.20545 0.76126 0.80063 0.83005 1.93213 1.33226 1.93837 1.94980 1.93184 1.95348 1.81367 1.46939 1.93110 1.77050 1.50092 1.96274 1.22190 1.00291 0.93301 0.90955 1.21575 1.00734 0.97432 0.94441 0.93832 0.92759 0.94234 0.94190 0.91725 0.94778 0.97001 0.96726 0.93250 0.96077 0.91674 0.84119 0.94531 0.89922 0.91377 0.89108 0.94298 0.86369 0.90006 0.94361 0.90112 0.90043 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.21 8.06 37.16 0.30 -1.91 16 2 C -0.06 -1.13 0.60 -154.51 -0.09 -1.22 16 3 C -0.13 -2.36 7.89 37.16 0.29 -2.07 16 4 C 0.03 0.83 4.04 -27.88 -0.11 0.71 16 5 C -0.50 -13.74 7.65 -34.44 -0.26 -14.00 16 6 H 0.06 1.58 5.68 -52.49 -0.30 1.29 16 7 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 8 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.07 1.19 4.45 -3.82 -0.02 1.17 16 14 N -0.68 -9.36 5.53 -106.59 -0.59 -9.95 16 15 C 0.08 0.97 2.56 -67.59 -0.17 0.80 16 16 C -0.12 -1.14 5.36 -26.65 -0.14 -1.28 16 17 C 0.04 0.35 5.23 -3.83 -0.02 0.33 16 18 N -0.53 -4.50 4.40 -234.67 -1.03 -5.53 16 19 C 0.01 0.06 5.12 -3.82 -0.02 0.04 16 20 C 0.46 3.75 3.27 37.16 0.12 3.87 16 21 F -0.17 -1.73 17.13 2.25 0.04 -1.69 16 22 F -0.19 -1.55 17.32 2.25 0.04 -1.51 16 23 F -0.18 -1.66 14.67 2.25 0.03 -1.63 16 24 C 0.06 0.50 5.42 -3.84 -0.02 0.48 16 25 C -0.10 -1.11 5.59 -26.65 -0.15 -1.26 16 26 H 0.04 0.75 7.60 -51.92 -0.39 0.36 16 27 H 0.05 1.12 6.62 -51.93 -0.34 0.77 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 31 H 0.03 0.53 6.57 -51.93 -0.34 0.18 16 32 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.02 0.36 8.06 -51.93 -0.42 -0.06 16 36 H 0.06 1.13 7.51 -51.93 -0.39 0.74 16 37 H 0.34 4.52 6.40 -39.29 -0.25 4.27 16 38 H 0.04 0.45 7.80 -51.93 -0.41 0.04 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.78 5.47 -51.93 -0.28 0.50 16 42 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.12 0.57 7.77 -51.93 -0.40 0.16 16 44 H 0.08 0.42 7.98 -51.93 -0.41 0.01 16 45 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 46 H 0.08 0.58 7.92 -51.93 -0.41 0.17 16 47 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.07 0.83 7.55 -51.93 -0.39 0.44 16 LS Contribution 375.04 15.07 5.65 5.65 Total: -1.00 -29.37 375.04 -8.57 -37.94 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -8.03 Total: -0.84 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -0.39 Total: -12.93 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: -0.89 Total: -41.52 kcal Atomic # 9 Polarization: -4.94 SS G_CDS: 0.11 Total: -4.83 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.37 -8.57 -37.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174329439.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.622 kcal (2) G-P(sol) polarization free energy of solvation -29.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds