Wall clock time and date at job start Sat Apr 11 2020 00:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47392 * 2 1 4 4 C 1.52995 * 109.47280 * 239.99895 * 2 1 3 5 5 C 1.50705 * 109.47148 * 60.00166 * 4 2 1 6 6 H 1.08001 * 119.99501 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00204 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99753 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00003 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46982 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47495 * 119.99474 * 9 7 5 12 12 H 1.48503 * 109.47121 * 239.99890 * 9 7 5 13 13 C 1.53008 * 109.47212 * 120.00109 * 2 1 3 14 14 N 1.46905 * 109.46752 * 300.00052 * 13 2 1 15 15 C 1.46902 * 110.99642 * 180.02562 * 14 13 2 16 16 C 1.53116 * 109.52198 * 155.00030 * 15 14 13 17 17 C 1.53040 * 109.27862 * 177.62336 * 16 15 14 18 18 N 1.46851 * 109.51898 * 300.81641 * 17 16 15 19 19 C 1.46896 * 110.99976 * 185.83872 * 18 17 16 20 20 C 1.53005 * 109.47100 * 76.73622 * 19 18 17 21 21 F 1.39893 * 109.47176 * 53.97886 * 20 19 18 22 22 F 1.39902 * 109.47234 * 173.98277 * 20 19 18 23 23 F 1.39907 * 109.47100 * 293.98361 * 20 19 18 24 24 C 1.46845 * 111.19816 * 61.74181 * 18 17 16 25 25 C 1.53035 * 109.52666 * 298.26049 * 24 18 17 26 26 H 1.09009 * 109.46969 * 300.00080 * 1 2 3 27 27 H 1.08994 * 109.46891 * 59.99455 * 1 2 3 28 28 H 1.08995 * 109.47303 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46922 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.46880 * 299.99817 * 3 2 1 31 31 H 1.08998 * 109.46715 * 59.99878 * 3 2 1 32 32 H 1.08998 * 109.47928 * 180.02562 * 4 2 1 33 33 H 1.09006 * 109.47364 * 300.00342 * 4 2 1 34 34 H 0.96998 * 119.99849 * 180.02562 * 8 7 5 35 35 H 1.08993 * 109.47231 * 179.97438 * 13 2 1 36 36 H 1.08995 * 109.47180 * 59.99687 * 13 2 1 37 37 H 1.00905 * 110.99801 * 303.94493 * 14 13 2 38 38 H 1.08996 * 109.52427 * 34.87219 * 15 14 13 39 39 H 1.08996 * 109.50598 * 57.67503 * 16 15 14 40 40 H 1.09000 * 109.53532 * 297.57587 * 16 15 14 41 41 H 1.08996 * 109.46060 * 180.80132 * 17 16 15 42 42 H 1.08999 * 109.45501 * 60.82422 * 17 16 15 43 43 H 1.08993 * 109.47537 * 196.73589 * 19 18 17 44 44 H 1.08999 * 109.47293 * 316.74198 * 19 18 17 45 45 H 1.09004 * 109.46137 * 58.27686 * 24 18 17 46 46 H 1.08998 * 109.46434 * 178.23627 * 24 18 17 47 47 H 1.09004 * 109.49721 * 299.23857 * 25 24 18 48 48 H 1.09000 * 109.50459 * 179.12147 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8704 -0.4822 -3.7320 8 7 2.6265 -1.5515 -3.8526 9 14 1.2484 0.3988 -5.2571 10 1 0.4238 1.5659 -4.8529 11 1 2.4036 0.8647 -6.0655 12 1 0.4226 -0.5340 -6.0654 13 6 2.0400 -0.7213 1.2493 14 7 1.5503 -0.0288 2.4487 15 6 2.0218 -0.6946 3.6704 16 6 2.0558 0.3138 4.8221 17 6 2.4907 -0.3987 6.1048 18 7 1.5479 -1.4831 6.4076 19 6 1.8544 -2.1002 7.7049 20 6 1.3643 -1.1886 8.8318 21 9 0.0101 -0.8957 8.6391 22 9 1.5312 -1.8356 10.0609 23 9 2.1037 -0.0009 8.8257 24 6 1.5331 -2.4882 5.3371 25 6 1.0697 -1.8381 4.0314 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 -0.7217 -1.2491 33 1 1.6766 -1.7490 -1.2492 34 1 2.8608 -1.8829 -4.7336 35 1 3.1300 -0.7217 1.2491 36 1 1.6767 -1.7489 1.2493 37 1 1.8199 0.9436 2.4402 38 1 3.0230 -1.0925 3.5051 39 1 1.0625 0.7405 4.9616 40 1 2.7641 1.1090 4.5896 41 1 2.5021 0.3136 6.9298 42 1 3.4896 -0.8132 5.9690 43 1 1.3539 -3.0659 7.7752 44 1 2.9314 -2.2418 7.7945 45 1 2.5366 -2.8929 5.2051 46 1 0.8492 -3.2936 5.6045 47 1 0.0609 -1.4452 4.1586 48 1 1.0738 -2.5807 3.2336 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174329439.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:23 Heat of formation + Delta-G solvation = -188.057423 kcal Electronic energy + Delta-G solvation = -28301.210249 eV Core-core repulsion = 23974.230139 eV Total energy + Delta-G solvation = -4326.980110 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.01700 -48.59485 -48.45244 -40.38303 -38.89328 -36.29263 -34.47609 -32.49820 -31.88099 -29.47274 -28.67170 -27.87862 -26.72506 -24.92219 -24.18677 -23.81929 -22.74640 -20.77689 -19.53498 -19.42322 -19.36565 -18.33899 -18.32436 -17.09789 -16.55370 -16.47224 -16.07147 -15.78067 -15.49199 -15.42891 -15.32276 -15.16442 -14.88537 -14.82985 -14.67671 -14.61148 -14.45108 -14.13748 -13.95292 -13.85804 -13.61738 -13.22826 -13.07769 -12.83433 -12.71526 -12.67726 -12.50245 -12.24629 -12.21758 -12.13251 -11.97993 -11.89900 -11.56279 -11.34561 -11.28029 -10.82226 -10.66523 -10.50713 -9.53895 -9.25505 -8.13858 -6.20457 1.40091 1.41367 1.53402 1.78995 2.43934 2.51521 2.93334 3.12301 3.20151 3.22971 3.49138 3.78930 3.90651 4.09593 4.15937 4.19317 4.26072 4.31044 4.34626 4.40608 4.45721 4.56307 4.61805 4.75026 4.77547 4.85085 4.89148 4.95746 4.99797 5.07695 5.10609 5.21824 5.23853 5.28352 5.43360 5.53090 5.55462 5.60194 5.68038 5.80977 5.88898 5.90359 5.94035 6.18013 6.38723 6.58761 6.94956 7.46807 8.98656 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.039615 B = 0.002094 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.635028 B =13367.299502 C =13523.943167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.054 4.054 3 C -0.122 4.122 4 C 0.039 3.961 5 C -0.511 4.511 6 H 0.065 0.935 7 C -0.006 4.006 8 N -0.938 5.938 9 Si 0.956 3.044 10 H -0.261 1.261 11 H -0.282 1.282 12 H -0.283 1.283 13 C 0.086 3.914 14 N -0.678 5.678 15 C 0.085 3.915 16 C -0.110 4.110 17 C 0.044 3.956 18 N -0.544 5.544 19 C 0.013 3.987 20 C 0.456 3.544 21 F -0.185 7.185 22 F -0.188 7.188 23 F -0.190 7.190 24 C 0.066 3.934 25 C -0.101 4.101 26 H 0.067 0.933 27 H 0.037 0.963 28 H 0.029 0.971 29 H 0.036 0.964 30 H 0.045 0.955 31 H 0.068 0.932 32 H -0.017 1.017 33 H -0.016 1.016 34 H 0.259 0.741 35 H 0.014 0.986 36 H 0.055 0.945 37 H 0.344 0.656 38 H 0.033 0.967 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.046 0.954 43 H 0.138 0.862 44 H 0.101 0.899 45 H 0.046 0.954 46 H 0.095 0.905 47 H 0.068 0.932 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.425 -0.036 27.372 27.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.055 4.055 3 C -0.180 4.180 4 C 0.002 3.998 5 C -0.549 4.549 6 H 0.084 0.916 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.782 3.218 10 H -0.185 1.185 11 H -0.208 1.208 12 H -0.209 1.209 13 C -0.043 4.043 14 N -0.310 5.310 15 C -0.025 4.025 16 C -0.148 4.148 17 C -0.084 4.084 18 N -0.269 5.269 19 C -0.117 4.117 20 C 0.401 3.599 21 F -0.166 7.166 22 F -0.169 7.169 23 F -0.172 7.172 24 C -0.061 4.061 25 C -0.140 4.140 26 H 0.086 0.914 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.002 0.998 33 H 0.002 0.998 34 H 0.068 0.932 35 H 0.032 0.968 36 H 0.074 0.926 37 H 0.164 0.836 38 H 0.051 0.949 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.065 0.935 43 H 0.156 0.844 44 H 0.119 0.881 45 H 0.064 0.936 46 H 0.114 0.886 47 H 0.087 0.913 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.437 -0.224 27.290 27.328 hybrid contribution 1.599 0.095 -1.191 1.996 sum 0.161 -0.130 26.098 26.099 Atomic orbital electron populations 1.21488 0.94348 1.00023 1.00436 1.20484 0.96229 0.95554 0.93201 1.21686 0.99402 0.95695 1.01189 1.19019 0.93907 0.94111 0.92803 1.21648 1.30004 1.11849 0.91442 0.91650 1.25924 0.95782 0.95944 1.02587 1.70115 1.38946 1.24959 1.23934 0.85526 0.78106 0.78814 0.79397 1.18496 1.20830 1.20882 1.21810 0.95410 0.97515 0.89563 1.60534 1.63575 1.06386 1.00541 1.21606 0.95936 0.95329 0.89605 1.21678 1.02848 0.97373 0.92892 1.22447 0.93301 0.93920 0.98725 1.61673 1.51758 1.12142 1.01311 1.23270 1.03776 0.97410 0.87256 1.20836 0.75468 0.80097 0.83513 1.93186 1.34401 1.93986 1.95069 1.93181 1.95291 1.81300 1.47171 1.93096 1.77089 1.50662 1.96322 1.22113 1.00994 0.93298 0.89691 1.21517 0.99943 0.96924 0.95586 0.91416 0.94439 0.95154 0.94500 0.93557 0.91354 0.99840 0.99786 0.93200 0.96772 0.92630 0.83584 0.94899 0.90832 0.90563 0.88948 0.93536 0.84411 0.88117 0.93609 0.88637 0.91277 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.99 8.06 71.98 0.58 -3.41 16 2 C -0.05 -2.13 0.60 -52.18 -0.03 -2.16 16 3 C -0.12 -4.35 7.89 71.98 0.57 -3.79 16 4 C 0.04 2.02 4.04 29.85 0.12 2.14 16 5 C -0.51 -28.27 7.65 25.60 0.20 -28.07 16 6 H 0.07 3.48 5.68 -2.91 -0.02 3.46 16 7 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 8 N -0.94 -57.32 13.29 21.45 0.28 -57.04 16 9 Si 0.96 44.52 29.54 68.60 2.03 46.55 16 10 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 C 0.09 2.87 4.45 86.30 0.38 3.25 16 14 N -0.68 -17.70 5.53 -491.15 -2.71 -20.41 16 15 C 0.09 1.82 2.56 44.99 0.12 1.94 16 16 C -0.11 -1.94 5.36 30.65 0.16 -1.77 16 17 C 0.04 0.66 5.23 86.33 0.45 1.11 16 18 N -0.54 -7.95 4.40 -896.37 -3.94 -11.89 16 19 C 0.01 0.13 5.12 86.31 0.44 0.57 16 20 C 0.46 6.62 3.27 71.98 0.24 6.85 16 21 F -0.18 -3.49 17.13 44.97 0.77 -2.71 16 22 F -0.19 -2.79 17.32 44.97 0.78 -2.01 16 23 F -0.19 -3.12 14.67 44.97 0.66 -2.46 16 24 C 0.07 0.96 5.42 86.33 0.47 1.43 16 25 C -0.10 -2.05 5.59 30.64 0.17 -1.88 16 26 H 0.07 2.22 7.60 -2.38 -0.02 2.20 16 27 H 0.04 1.52 6.62 -2.39 -0.02 1.50 16 28 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.05 1.81 6.62 -2.39 -0.02 1.79 16 31 H 0.07 1.95 6.57 -2.39 -0.02 1.94 16 32 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 33 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 34 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 35 H 0.01 0.49 8.06 -2.39 -0.02 0.47 16 36 H 0.06 1.95 7.51 -2.39 -0.02 1.93 16 37 H 0.34 8.40 6.40 -89.69 -0.57 7.82 16 38 H 0.03 0.75 7.80 -2.39 -0.02 0.74 16 39 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.09 1.39 5.47 -2.39 -0.01 1.38 16 42 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.14 0.88 7.77 -2.39 -0.02 0.86 16 44 H 0.10 0.70 7.98 -2.39 -0.02 0.68 16 45 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 46 H 0.10 1.12 7.92 -2.39 -0.02 1.10 16 47 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 48 H 0.06 1.35 7.55 -2.39 -0.02 1.33 16 Total: -1.00 -64.20 375.04 2.56 -61.63 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 0.38 Total: 12.00 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: 4.33 Total: -23.65 kcal Atomic # 7 Polarization: -82.97 SS G_CDS: -6.37 Total: -89.34 kcal Atomic # 9 Polarization: -9.40 SS G_CDS: 2.21 Total: -7.19 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -64.20 2.56 -61.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174329439.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.425 kcal (2) G-P(sol) polarization free energy of solvation -64.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds