Wall clock time and date at job start Sat Apr 11 2020 00:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81402 * 102.99425 * 2 1 4 4 C 1.52996 * 109.47334 * 60.00494 * 3 2 1 5 5 C 1.52999 * 109.47371 * 299.99863 * 3 2 1 6 6 C 1.53004 * 109.46997 * 180.02562 * 3 2 1 7 7 N 1.46901 * 109.46916 * 59.99840 * 6 3 2 8 8 C 1.46905 * 110.99870 * 180.02562 * 7 6 3 9 9 C 1.50697 * 109.47066 * 180.02562 * 8 7 6 10 10 C 1.38284 * 119.92731 * 269.72721 * 9 8 7 11 11 C 1.38107 * 120.07495 * 179.72775 * 10 9 8 12 12 C 1.38905 * 119.92196 * 0.54269 * 11 10 9 13 13 N 1.39682 * 120.07290 * 179.74950 * 12 11 10 14 14 C 1.46495 * 119.99815 * 179.97438 * 13 12 11 15 15 C 1.46503 * 119.99949 * 359.97438 * 13 12 11 16 16 C 1.50696 * 109.46934 * 89.99878 * 15 13 12 17 17 H 1.08001 * 120.00501 * 359.97438 * 16 15 13 18 18 C 1.37884 * 119.99736 * 180.02562 * 16 15 13 19 19 N 1.31515 * 120.00102 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99824 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46922 * 90.00519 * 20 18 16 22 22 H 1.48500 * 109.46780 * 210.00123 * 20 18 16 23 23 H 1.48492 * 109.47061 * 330.00447 * 20 18 16 24 24 C 1.38908 * 119.85666 * 359.73022 * 12 11 10 25 25 C 1.38113 * 119.92265 * 359.97438 * 24 12 11 26 26 H 1.08993 * 109.47412 * 59.99962 * 1 2 3 27 27 H 1.09002 * 109.47037 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47347 * 299.99944 * 1 2 3 29 29 H 1.09005 * 109.47573 * 179.97438 * 4 3 2 30 30 H 1.09001 * 109.47128 * 299.99342 * 4 3 2 31 31 H 1.08993 * 109.47740 * 59.99528 * 4 3 2 32 32 H 1.09002 * 109.47301 * 300.00150 * 5 3 2 33 33 H 1.09001 * 109.47017 * 60.00703 * 5 3 2 34 34 H 1.09005 * 109.47249 * 180.02562 * 5 3 2 35 35 H 1.09004 * 109.46889 * 300.00221 * 6 3 2 36 36 H 1.08995 * 109.47384 * 179.97438 * 6 3 2 37 37 H 1.00901 * 111.00067 * 303.95263 * 7 6 3 38 38 H 1.09001 * 109.46798 * 300.00327 * 8 7 6 39 39 H 1.08998 * 109.46961 * 60.00043 * 8 7 6 40 40 H 1.08001 * 119.96155 * 359.97438 * 10 9 8 41 41 H 1.08001 * 120.03692 * 180.27771 * 11 10 9 42 42 H 1.09006 * 109.47190 * 90.00390 * 14 13 12 43 43 H 1.09005 * 109.47273 * 210.00039 * 14 13 12 44 44 H 1.08999 * 109.47518 * 330.00267 * 14 13 12 45 45 H 1.08992 * 109.47000 * 209.99766 * 15 13 12 46 46 H 1.08998 * 109.46696 * 330.00052 * 15 13 12 47 47 H 0.96995 * 120.00351 * 179.97438 * 19 18 16 48 48 H 1.07999 * 120.04104 * 179.97438 * 24 12 11 49 49 H 1.07994 * 119.96170 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2219 1.7676 0.0000 4 6 1.6339 2.4267 1.2493 5 6 1.6338 2.4267 -1.2492 6 6 3.7422 1.9401 -0.0006 7 7 4.3063 1.3073 -1.2004 8 6 5.7677 1.4530 -1.2347 9 6 6.3092 0.7937 -2.4769 10 6 6.6792 -0.5383 -2.4456 11 6 7.1705 -1.1471 -3.5837 12 6 7.3034 -0.4167 -4.7578 13 7 7.8049 -1.0279 -5.9093 14 6 7.9438 -0.2562 -7.1468 15 6 8.1920 -2.4406 -5.8796 16 6 7.0059 -3.2942 -6.2477 17 1 6.0584 -2.8309 -6.4801 18 6 7.1300 -4.6669 -6.2867 19 7 6.0949 -5.4119 -6.6074 20 14 8.7687 -5.4682 -5.8839 21 1 8.8362 -5.7522 -4.4279 22 1 8.8982 -6.7383 -6.6425 23 1 9.8741 -4.5513 -6.2612 24 6 6.9361 0.9226 -4.7843 25 6 6.4397 1.5236 -3.6442 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8794 3.4887 1.2495 30 1 0.5509 2.3039 1.2493 31 1 2.0528 1.9572 2.1392 32 1 2.0528 1.9572 -2.1392 33 1 0.5508 2.3039 -1.2492 34 1 1.8794 3.4888 -1.2494 35 1 4.1615 1.4704 0.8891 36 1 3.9873 3.0022 -0.0011 37 1 4.0386 0.3361 -1.2568 38 1 6.0272 2.5116 -1.2430 39 1 6.2007 0.9796 -0.3535 40 1 6.5801 -1.1043 -1.5311 41 1 7.4551 -2.1887 -3.5598 42 1 8.9322 0.2022 -7.1801 43 1 7.8216 -0.9187 -8.0038 44 1 7.1812 0.5219 -7.1774 45 1 8.9980 -2.6115 -6.5930 46 1 8.5316 -2.7031 -4.8777 47 1 6.1823 -6.3775 -6.6352 48 1 7.0385 1.4934 -5.6954 49 1 6.1543 2.5650 -3.6640 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174438229.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:27 Heat of formation + Delta-G solvation = 28.729072 kcal Electronic energy + Delta-G solvation = -24689.812217 eV Core-core repulsion = 21356.842286 eV Total energy + Delta-G solvation = -3332.969931 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.177 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.10096 -37.60942 -35.95772 -33.93117 -32.55929 -30.50632 -30.11176 -28.93674 -28.28973 -27.57771 -26.42783 -24.74100 -23.29407 -22.05072 -21.31807 -20.85134 -19.51290 -16.92534 -16.81482 -16.39870 -15.96691 -15.20270 -15.06909 -14.96114 -14.51032 -14.26097 -14.06517 -13.93474 -13.69891 -13.49820 -13.19500 -13.00751 -12.94042 -12.84364 -12.46878 -12.42327 -12.24179 -12.06666 -11.81123 -11.59567 -11.57530 -11.42698 -11.36723 -11.16944 -10.94067 -10.63394 -10.58377 -10.22871 -10.02999 -9.85810 -9.56387 -8.88799 -8.63787 -8.35866 -8.25894 -7.77188 -6.38607 -6.12275 -4.12185 1.52073 2.10461 2.20890 2.38979 3.23115 3.30830 3.31571 4.05375 4.12450 4.34070 4.48176 4.56944 4.76007 4.88879 4.90958 4.98353 5.18006 5.21202 5.26526 5.27622 5.37525 5.43485 5.47422 5.53672 5.59760 5.62880 5.66898 5.67720 5.76965 5.80890 5.81391 5.98217 6.04075 6.20900 6.25853 6.34821 6.40330 6.58296 6.76729 6.77519 6.96858 7.08235 7.12847 7.26311 7.48487 7.54855 7.57178 8.07235 8.36821 8.53743 8.95851 9.47528 11.00785 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.002818 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.959020 B = 9934.235154 C =11051.291802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.252 6.252 3 C -0.028 4.028 4 C -0.143 4.143 5 C -0.135 4.135 6 C 0.083 3.917 7 N -0.681 5.681 8 C 0.115 3.885 9 C -0.169 4.169 10 C -0.065 4.065 11 C -0.187 4.187 12 C 0.241 3.759 13 N -0.612 5.612 14 C 0.099 3.901 15 C 0.221 3.779 16 C -0.534 4.534 17 H 0.077 0.923 18 C 0.072 3.928 19 N -0.894 5.894 20 Si 0.872 3.128 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.266 1.266 24 C -0.219 4.219 25 C -0.050 4.050 26 H 0.077 0.923 27 H 0.099 0.901 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.035 0.965 36 H 0.082 0.918 37 H 0.352 0.648 38 H 0.070 0.930 39 H 0.029 0.971 40 H 0.108 0.892 41 H 0.127 0.873 42 H 0.036 0.964 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.027 0.973 46 H 0.027 0.973 47 H 0.265 0.735 48 H 0.114 0.886 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.136 17.029 13.835 22.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.026 6.026 3 C -0.138 4.138 4 C -0.203 4.203 5 C -0.194 4.194 6 C -0.048 4.048 7 N -0.315 5.315 8 C -0.013 4.013 9 C -0.172 4.172 10 C -0.085 4.085 11 C -0.210 4.210 12 C 0.135 3.865 13 N -0.317 5.317 14 C -0.045 4.045 15 C 0.099 3.901 16 C -0.573 4.573 17 H 0.095 0.905 18 C -0.130 4.130 19 N -0.533 5.533 20 Si 0.699 3.301 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.190 1.190 24 C -0.242 4.242 25 C -0.070 4.070 26 H 0.096 0.904 27 H 0.118 0.882 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.100 0.900 37 H 0.172 0.828 38 H 0.088 0.912 39 H 0.047 0.953 40 H 0.126 0.874 41 H 0.145 0.855 42 H 0.054 0.946 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.045 0.955 46 H 0.045 0.955 47 H 0.075 0.925 48 H 0.132 0.868 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.532 16.369 13.197 21.742 hybrid contribution 0.008 -0.357 0.758 0.838 sum -5.524 16.013 13.956 21.947 Atomic orbital electron populations 1.23421 0.94553 1.06338 1.04706 1.86931 1.07229 1.10692 1.97698 1.22786 0.98786 0.93388 0.98862 1.22107 1.00800 1.00892 0.96461 1.22009 0.99399 1.00652 0.97307 1.21765 0.90419 1.00386 0.92235 1.60637 1.10045 1.22650 1.38139 1.20642 0.86539 0.99650 0.94474 1.19166 1.08067 0.94584 0.95352 1.20663 0.96888 0.93704 0.97230 1.20777 1.07544 1.00634 0.91997 1.17913 0.90429 0.91183 0.86970 1.46708 1.66752 1.11020 1.07268 1.21489 0.99397 0.96066 0.87564 1.19651 0.96139 0.77337 0.96937 1.21487 0.97556 0.90943 1.47284 0.90524 1.24902 0.96337 0.97142 0.94637 1.69902 1.29825 1.05358 1.48167 0.86919 0.84739 0.79417 0.79074 1.19907 1.20976 1.19035 1.20565 1.10374 0.94159 0.99104 1.20489 0.96305 0.98457 0.91722 0.90355 0.88235 0.90759 0.91589 0.92356 0.91542 0.89725 0.93410 0.92063 0.94721 0.90000 0.82751 0.91172 0.95328 0.87377 0.85478 0.94585 0.91301 0.92363 0.95479 0.95530 0.92526 0.86806 0.87216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 9.87 101.05 1.00 0.00 16 2 S -0.25 -2.78 19.93 -107.50 -2.14 -4.92 16 3 C -0.03 -0.26 0.76 -90.62 -0.07 -0.33 16 4 C -0.14 -1.04 8.32 37.16 0.31 -0.73 16 5 C -0.13 -1.25 8.16 37.16 0.30 -0.95 16 6 C 0.08 0.82 4.65 -3.82 -0.02 0.80 16 7 N -0.68 -8.38 5.71 -115.05 -0.66 -9.04 16 8 C 0.12 1.44 5.81 -4.97 -0.03 1.42 16 9 C -0.17 -2.62 5.39 -104.59 -0.56 -3.18 16 10 C -0.07 -1.13 9.69 -39.61 -0.38 -1.51 16 11 C -0.19 -3.77 9.21 -39.38 -0.36 -4.13 16 12 C 0.24 4.87 6.55 -83.79 -0.55 4.32 16 13 N -0.61 -12.92 2.99 -181.00 -0.54 -13.46 16 14 C 0.10 1.71 10.19 59.84 0.61 2.32 16 15 C 0.22 5.24 3.98 -5.19 -0.02 5.22 16 16 C -0.53 -14.97 9.94 -34.44 -0.34 -15.31 16 17 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 18 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 19 N -0.89 -27.17 13.96 55.43 0.77 -26.40 16 20 Si 0.87 20.86 27.47 -169.99 -4.67 16.19 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 24 C -0.22 -3.82 9.21 -39.38 -0.36 -4.18 16 25 C -0.05 -0.79 9.69 -39.61 -0.38 -1.18 16 26 H 0.08 0.61 6.99 -51.93 -0.36 0.25 16 27 H 0.10 0.77 8.14 -51.92 -0.42 0.34 16 28 H 0.07 0.51 7.00 -51.92 -0.36 0.14 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.39 6.68 -51.93 -0.35 0.04 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.98 7.60 -51.93 -0.39 0.58 16 33 H 0.05 0.40 6.68 -51.93 -0.35 0.05 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.35 4.91 7.33 -39.29 -0.29 4.62 16 38 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 39 H 0.03 0.35 8.08 -51.93 -0.42 -0.07 16 40 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 41 H 0.13 2.75 6.14 -52.49 -0.32 2.43 16 42 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 44 H 0.06 0.91 6.20 -51.93 -0.32 0.59 16 45 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 46 H 0.03 0.63 5.62 -51.93 -0.29 0.34 16 47 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 48 H 0.11 1.79 6.14 -52.49 -0.32 1.46 16 49 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 394.93 15.07 5.95 5.95 Total: -1.00 -30.38 394.93 -10.63 -41.01 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -8.39 Total: 6.12 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -0.96 Total: -15.45 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: -0.43 Total: -48.90 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Atomic # 16 Polarization: -2.78 SS G_CDS: -2.14 Total: -4.92 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.38 -10.63 -41.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174438229.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.743 kcal (2) G-P(sol) polarization free energy of solvation -30.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds