Wall clock time and date at job start Sat Apr 11 2020 00:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81402 * 102.99425 * 2 1 4 4 C 1.52996 * 109.47334 * 60.00494 * 3 2 1 5 5 C 1.52999 * 109.47371 * 299.99863 * 3 2 1 6 6 C 1.53004 * 109.46997 * 180.02562 * 3 2 1 7 7 N 1.46901 * 109.46916 * 59.99840 * 6 3 2 8 8 C 1.46905 * 110.99870 * 180.02562 * 7 6 3 9 9 C 1.50697 * 109.47066 * 180.02562 * 8 7 6 10 10 C 1.38284 * 119.92731 * 269.72721 * 9 8 7 11 11 C 1.38107 * 120.07495 * 179.72775 * 10 9 8 12 12 C 1.38905 * 119.92196 * 0.54269 * 11 10 9 13 13 N 1.39682 * 120.07290 * 179.74950 * 12 11 10 14 14 C 1.46495 * 119.99815 * 179.97438 * 13 12 11 15 15 C 1.46503 * 119.99949 * 359.97438 * 13 12 11 16 16 C 1.50696 * 109.46934 * 89.99878 * 15 13 12 17 17 H 1.08001 * 120.00501 * 359.97438 * 16 15 13 18 18 C 1.37884 * 119.99736 * 180.02562 * 16 15 13 19 19 N 1.31515 * 120.00102 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99824 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46922 * 90.00519 * 20 18 16 22 22 H 1.48500 * 109.46780 * 210.00123 * 20 18 16 23 23 H 1.48492 * 109.47061 * 330.00447 * 20 18 16 24 24 C 1.38908 * 119.85666 * 359.73022 * 12 11 10 25 25 C 1.38113 * 119.92265 * 359.97438 * 24 12 11 26 26 H 1.08993 * 109.47412 * 59.99962 * 1 2 3 27 27 H 1.09002 * 109.47037 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47347 * 299.99944 * 1 2 3 29 29 H 1.09005 * 109.47573 * 179.97438 * 4 3 2 30 30 H 1.09001 * 109.47128 * 299.99342 * 4 3 2 31 31 H 1.08993 * 109.47740 * 59.99528 * 4 3 2 32 32 H 1.09002 * 109.47301 * 300.00150 * 5 3 2 33 33 H 1.09001 * 109.47017 * 60.00703 * 5 3 2 34 34 H 1.09005 * 109.47249 * 180.02562 * 5 3 2 35 35 H 1.09004 * 109.46889 * 300.00221 * 6 3 2 36 36 H 1.08995 * 109.47384 * 179.97438 * 6 3 2 37 37 H 1.00901 * 111.00067 * 303.95263 * 7 6 3 38 38 H 1.09001 * 109.46798 * 300.00327 * 8 7 6 39 39 H 1.08998 * 109.46961 * 60.00043 * 8 7 6 40 40 H 1.08001 * 119.96155 * 359.97438 * 10 9 8 41 41 H 1.08001 * 120.03692 * 180.27771 * 11 10 9 42 42 H 1.09006 * 109.47190 * 90.00390 * 14 13 12 43 43 H 1.09005 * 109.47273 * 210.00039 * 14 13 12 44 44 H 1.08999 * 109.47518 * 330.00267 * 14 13 12 45 45 H 1.08992 * 109.47000 * 209.99766 * 15 13 12 46 46 H 1.08998 * 109.46696 * 330.00052 * 15 13 12 47 47 H 0.96995 * 120.00351 * 179.97438 * 19 18 16 48 48 H 1.07999 * 120.04104 * 179.97438 * 24 12 11 49 49 H 1.07994 * 119.96170 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2219 1.7676 0.0000 4 6 1.6339 2.4267 1.2493 5 6 1.6338 2.4267 -1.2492 6 6 3.7422 1.9401 -0.0006 7 7 4.3063 1.3073 -1.2004 8 6 5.7677 1.4530 -1.2347 9 6 6.3092 0.7937 -2.4769 10 6 6.6792 -0.5383 -2.4456 11 6 7.1705 -1.1471 -3.5837 12 6 7.3034 -0.4167 -4.7578 13 7 7.8049 -1.0279 -5.9093 14 6 7.9438 -0.2562 -7.1468 15 6 8.1920 -2.4406 -5.8796 16 6 7.0059 -3.2942 -6.2477 17 1 6.0584 -2.8309 -6.4801 18 6 7.1300 -4.6669 -6.2867 19 7 6.0949 -5.4119 -6.6074 20 14 8.7687 -5.4682 -5.8839 21 1 8.8362 -5.7522 -4.4279 22 1 8.8982 -6.7383 -6.6425 23 1 9.8741 -4.5513 -6.2612 24 6 6.9361 0.9226 -4.7843 25 6 6.4397 1.5236 -3.6442 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8794 3.4887 1.2495 30 1 0.5509 2.3039 1.2493 31 1 2.0528 1.9572 2.1392 32 1 2.0528 1.9572 -2.1392 33 1 0.5508 2.3039 -1.2492 34 1 1.8794 3.4888 -1.2494 35 1 4.1615 1.4704 0.8891 36 1 3.9873 3.0022 -0.0011 37 1 4.0386 0.3361 -1.2568 38 1 6.0272 2.5116 -1.2430 39 1 6.2007 0.9796 -0.3535 40 1 6.5801 -1.1043 -1.5311 41 1 7.4551 -2.1887 -3.5598 42 1 8.9322 0.2022 -7.1801 43 1 7.8216 -0.9187 -8.0038 44 1 7.1812 0.5219 -7.1774 45 1 8.9980 -2.6115 -6.5930 46 1 8.5316 -2.7031 -4.8777 47 1 6.1823 -6.3775 -6.6352 48 1 7.0385 1.4934 -5.6954 49 1 6.1543 2.5650 -3.6640 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174438229.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:26 Heat of formation + Delta-G solvation = 11.775382 kcal Electronic energy + Delta-G solvation = -24690.547384 eV Core-core repulsion = 21356.842286 eV Total energy + Delta-G solvation = -3333.705098 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.177 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.48306 -38.54280 -37.30795 -35.09246 -34.50983 -31.97858 -31.36614 -30.10208 -29.62452 -28.23642 -27.59713 -26.12370 -24.61098 -23.42254 -22.83100 -21.63883 -20.92973 -19.08253 -18.21003 -17.31047 -17.07389 -16.58857 -16.25164 -15.96926 -15.84197 -15.55524 -15.25156 -14.88543 -14.79924 -14.67632 -14.57967 -14.34420 -14.26466 -13.85454 -13.66355 -13.36367 -13.25741 -13.15137 -13.08965 -12.96781 -12.82312 -12.61898 -12.42273 -12.38070 -12.14302 -12.06068 -12.02908 -11.76254 -11.62471 -11.44156 -10.82737 -10.60459 -10.41378 -9.66677 -9.28652 -8.61805 -8.33614 -7.90737 -6.38953 0.70666 0.78094 0.84452 1.33525 1.34493 1.45155 1.67871 2.30067 2.54637 2.99640 3.00803 3.46048 3.77554 3.99118 4.03364 4.11119 4.18133 4.24052 4.30396 4.34499 4.40437 4.47733 4.60514 4.64794 4.68563 4.70320 4.71448 4.75440 4.80832 4.82376 4.82755 4.90462 4.91520 4.94570 5.00450 5.06399 5.09398 5.21907 5.30591 5.45122 5.45567 5.60293 5.64917 5.92314 6.09058 6.12998 6.24402 6.41913 6.59969 6.70070 6.87662 7.26454 8.83955 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.002818 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.959020 B = 9934.235154 C =11051.291802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.322 6.322 3 C -0.014 4.014 4 C -0.139 4.139 5 C -0.131 4.131 6 C 0.083 3.917 7 N -0.688 5.688 8 C 0.119 3.881 9 C -0.157 4.157 10 C -0.071 4.071 11 C -0.217 4.217 12 C 0.212 3.788 13 N -0.629 5.629 14 C 0.097 3.903 15 C 0.232 3.768 16 C -0.536 4.536 17 H 0.024 0.976 18 C 0.012 3.988 19 N -0.946 5.946 20 Si 0.947 3.053 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.242 1.242 24 C -0.217 4.217 25 C -0.048 4.048 26 H 0.081 0.919 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.033 0.967 36 H 0.100 0.900 37 H 0.340 0.660 38 H 0.092 0.908 39 H 0.034 0.966 40 H 0.119 0.881 41 H 0.099 0.901 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.073 0.927 45 H 0.036 0.964 46 H 0.028 0.972 47 H 0.268 0.732 48 H 0.133 0.867 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.460 19.814 15.372 25.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 S -0.096 6.096 3 C -0.124 4.124 4 C -0.198 4.198 5 C -0.189 4.189 6 C -0.047 4.047 7 N -0.320 5.320 8 C -0.009 4.009 9 C -0.160 4.160 10 C -0.090 4.090 11 C -0.239 4.239 12 C 0.107 3.893 13 N -0.337 5.337 14 C -0.046 4.046 15 C 0.109 3.891 16 C -0.575 4.575 17 H 0.042 0.958 18 C -0.186 4.186 19 N -0.586 5.586 20 Si 0.769 3.231 21 H -0.191 1.191 22 H -0.205 1.205 23 H -0.166 1.166 24 C -0.239 4.239 25 C -0.067 4.067 26 H 0.100 0.900 27 H 0.119 0.881 28 H 0.110 0.890 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.118 0.882 37 H 0.159 0.841 38 H 0.110 0.890 39 H 0.052 0.948 40 H 0.137 0.863 41 H 0.117 0.883 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.092 0.908 45 H 0.054 0.946 46 H 0.046 0.954 47 H 0.077 0.923 48 H 0.151 0.849 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.861 19.214 14.748 24.705 hybrid contribution -0.374 -1.104 0.341 1.215 sum -5.236 18.110 15.089 24.147 Atomic orbital electron populations 1.23421 0.91645 1.06837 1.05694 1.87179 1.10642 1.13884 1.97853 1.22793 0.98400 0.91349 0.99877 1.22076 1.01089 1.01532 0.95098 1.21948 0.99756 1.01072 0.96159 1.21854 0.90760 1.00999 0.91070 1.60649 1.09723 1.21959 1.39637 1.20650 0.86749 1.00548 0.92935 1.19531 1.06047 0.93712 0.96702 1.20838 0.96582 0.94835 0.96759 1.20757 1.09774 0.99756 0.93652 1.18197 0.91887 0.92505 0.86666 1.46694 1.68016 1.10167 1.08829 1.21635 1.01437 0.95837 0.85670 1.19327 0.94233 0.78713 0.96801 1.21672 0.97139 0.91812 1.46899 0.95805 1.25881 1.00743 0.97726 0.94294 1.70068 1.32702 1.05845 1.49988 0.85730 0.79811 0.78482 0.79068 1.19136 1.20472 1.16572 1.20836 1.09456 0.93046 1.00586 1.20881 0.94957 0.99890 0.90926 0.89985 0.88064 0.89039 0.89917 0.91669 0.91719 0.92289 0.92656 0.90688 0.94897 0.88164 0.84115 0.88988 0.94811 0.86328 0.88271 0.91925 0.92611 0.90816 0.94585 0.95403 0.92321 0.84911 0.84008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 9.87 113.37 1.12 -0.52 16 2 S -0.32 -6.97 19.93 -56.49 -1.13 -8.10 16 3 C -0.01 -0.24 0.76 -10.79 -0.01 -0.25 16 4 C -0.14 -1.62 8.32 71.98 0.60 -1.02 16 5 C -0.13 -2.17 8.16 71.98 0.59 -1.58 16 6 C 0.08 1.46 4.65 86.30 0.40 1.86 16 7 N -0.69 -15.73 5.71 -517.92 -2.96 -18.69 16 8 C 0.12 2.69 5.81 85.55 0.50 3.19 16 9 C -0.16 -4.61 5.39 -19.84 -0.11 -4.72 16 10 C -0.07 -2.45 9.69 22.25 0.22 -2.24 16 11 C -0.22 -9.03 9.21 22.40 0.21 -8.82 16 12 C 0.21 8.62 6.55 38.21 0.25 8.87 16 13 N -0.63 -26.94 2.99 -726.57 -2.17 -29.11 16 14 C 0.10 3.31 10.19 127.77 1.30 4.61 16 15 C 0.23 11.23 3.98 85.63 0.34 11.57 16 16 C -0.54 -31.51 9.94 25.60 0.25 -31.25 16 17 H 0.02 1.60 8.06 -2.91 -0.02 1.58 16 18 C 0.01 0.68 5.47 84.66 0.46 1.14 16 19 N -0.95 -59.91 13.96 21.45 0.30 -59.61 16 20 Si 0.95 43.69 27.47 68.60 1.88 45.58 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.24 -10.21 6.54 99.48 0.65 -9.56 16 24 C -0.22 -7.23 9.21 22.40 0.21 -7.03 16 25 C -0.05 -1.37 9.69 22.25 0.22 -1.16 16 26 H 0.08 1.18 6.99 -2.39 -0.02 1.16 16 27 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.09 1.06 7.00 -2.39 -0.02 1.04 16 29 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.06 0.68 6.68 -2.39 -0.02 0.67 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 1.30 7.60 -2.39 -0.02 1.28 16 33 H 0.05 0.82 6.68 -2.39 -0.02 0.80 16 34 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.34 9.34 7.33 -89.69 -0.66 8.68 16 38 H 0.09 1.72 8.08 -2.39 -0.02 1.70 16 39 H 0.03 0.74 8.08 -2.39 -0.02 0.72 16 40 H 0.12 3.72 8.06 -2.91 -0.02 3.70 16 41 H 0.10 4.58 6.14 -2.91 -0.02 4.56 16 42 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 43 H 0.06 2.00 8.07 -2.38 -0.02 1.99 16 44 H 0.07 2.23 6.20 -2.39 -0.01 2.21 16 45 H 0.04 1.67 7.13 -2.39 -0.02 1.66 16 46 H 0.03 1.35 5.62 -2.39 -0.01 1.33 16 47 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 48 H 0.13 3.85 6.14 -2.91 -0.02 3.83 16 49 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -69.83 394.93 2.68 -67.15 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: 0.21 Total: 30.12 kcal Atomic # 6 Polarization: -33.88 SS G_CDS: 6.54 Total: -27.34 kcal Atomic # 7 Polarization: -102.58 SS G_CDS: -4.83 Total: -107.41 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.88 Total: 45.58 kcal Atomic # 16 Polarization: -6.97 SS G_CDS: -1.13 Total: -8.10 kcal Total: -69.83 2.68 -67.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174438229.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.928 kcal (2) G-P(sol) polarization free energy of solvation -69.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds