Wall clock time and date at job start Sat Apr 11 2020 00:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47164 * 2 1 4 4 C 1.46504 * 119.99995 * 269.99818 * 3 2 1 5 5 C 1.50694 * 109.47224 * 269.99893 * 4 3 2 6 6 H 1.08004 * 119.99943 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00389 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99712 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00388 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47216 * 90.00019 * 9 7 5 11 11 H 1.48498 * 109.47513 * 210.00167 * 9 7 5 12 12 H 1.48503 * 109.47087 * 330.00283 * 9 7 5 13 13 C 1.34780 * 120.00266 * 89.99163 * 3 2 1 14 14 O 1.21282 * 120.00115 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99940 * 0.02562 * 13 3 2 16 16 N 1.46895 * 109.47184 * 179.97438 * 15 13 3 17 17 C 1.46904 * 111.00123 * 179.97438 * 16 15 13 18 18 C 1.53003 * 109.46617 * 60.00586 * 17 16 15 19 19 C 1.53001 * 109.47379 * 300.00567 * 17 16 15 20 20 C 1.50695 * 109.47243 * 180.02562 * 17 16 15 21 21 C 1.38266 * 119.98923 * 359.95986 * 20 17 16 22 22 C 1.38226 * 120.05404 * 180.02562 * 21 20 17 23 23 C 1.38217 * 120.02522 * 0.03782 * 22 21 20 24 24 C 1.38434 * 119.97400 * 359.97438 * 23 22 21 25 25 F 1.35099 * 120.02897 * 180.02562 * 24 23 22 26 26 C 1.38176 * 119.98906 * 180.02562 * 20 17 16 27 27 H 1.09001 * 109.47113 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47646 * 300.00293 * 1 2 3 29 29 H 1.09004 * 109.46808 * 60.00503 * 1 2 3 30 30 H 1.08994 * 109.47206 * 239.99862 * 2 1 3 31 31 H 1.09004 * 109.46808 * 119.99497 * 2 1 3 32 32 H 1.09001 * 109.46989 * 29.99829 * 4 3 2 33 33 H 1.09000 * 109.46946 * 149.99569 * 4 3 2 34 34 H 0.96997 * 120.00193 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.47007 * 59.99590 * 15 13 3 36 36 H 1.08994 * 109.47273 * 299.99495 * 15 13 3 37 37 H 1.00900 * 110.99812 * 56.04958 * 16 15 13 38 38 H 1.09004 * 109.46656 * 179.97438 * 18 17 16 39 39 H 1.09001 * 109.46959 * 299.99342 * 18 17 16 40 40 H 1.08993 * 109.47130 * 59.99767 * 18 17 16 41 41 H 1.09004 * 109.46869 * 299.99977 * 19 17 16 42 42 H 1.09001 * 109.46881 * 59.99590 * 19 17 16 43 43 H 1.08994 * 109.46721 * 179.97438 * 19 17 16 44 44 H 1.08008 * 119.97418 * 0.04219 * 21 20 17 45 45 H 1.07998 * 119.98497 * 180.02562 * 22 21 20 46 46 H 1.08003 * 120.01075 * 180.02562 * 23 22 21 47 47 H 1.07996 * 120.01219 * 0.24814 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2309 -1.0957 7 6 4.1492 2.3895 -2.8779 8 7 3.3492 3.1256 -3.6181 9 14 5.9136 2.0966 -3.4167 10 1 5.9777 0.8753 -4.2589 11 1 6.3922 3.2638 -4.2002 12 1 6.7736 1.9179 -2.2194 13 6 2.2428 2.0166 1.1672 14 8 2.6475 3.1599 1.1672 15 6 1.9920 1.3061 2.4723 16 7 2.3106 2.2060 3.5888 17 6 2.0769 1.5459 4.8802 18 6 2.9621 0.3023 4.9847 19 6 0.6066 1.1357 4.9847 20 6 2.4132 2.4978 5.9990 21 6 2.8646 3.7722 5.7099 22 6 3.1740 4.6463 6.7351 23 6 3.0330 4.2467 8.0508 24 6 2.5813 2.9708 8.3415 25 9 2.4425 2.5793 9.6271 26 6 2.2715 2.0961 7.3135 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.5818 1.6876 -2.0284 33 1 2.0955 3.1410 -1.1384 34 1 3.6752 3.5161 -4.4440 35 1 2.6225 0.4189 2.5299 36 1 0.9442 1.0117 2.5302 37 1 1.7854 3.0650 3.5220 38 1 2.7891 -0.1873 5.9431 39 1 2.7184 -0.3861 4.1754 40 1 4.0095 0.5945 4.9102 41 1 -0.0239 2.0217 4.9103 42 1 0.3631 0.4473 4.1754 43 1 0.4335 0.6455 5.9427 44 1 2.9755 4.0853 4.6822 45 1 3.5261 5.6416 6.5080 46 1 3.2743 4.9300 8.8516 47 1 1.9236 1.0989 7.5392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179565173.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:39 Heat of formation + Delta-G solvation = -51.364045 kcal Electronic energy + Delta-G solvation = -27441.832517 eV Core-core repulsion = 23539.176312 eV Total energy + Delta-G solvation = -3902.656205 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.05770 -40.15743 -38.97825 -37.01867 -35.25189 -32.88071 -32.21021 -30.58614 -30.10454 -29.72166 -27.81056 -27.48406 -25.85764 -23.48394 -23.01798 -22.59846 -22.13698 -19.69083 -18.63309 -17.68047 -16.59388 -16.46108 -16.26949 -16.19261 -15.84573 -15.75771 -15.05391 -14.79443 -14.57857 -14.20300 -14.06387 -13.91813 -13.54624 -13.38917 -13.28671 -12.92695 -12.78658 -12.41075 -12.16790 -12.15717 -12.06943 -11.98218 -11.65580 -11.61916 -11.42088 -11.32695 -11.17333 -10.90711 -10.80874 -10.71288 -10.51170 -10.11472 -9.61786 -9.16151 -8.90568 -8.80196 -8.42377 -8.37318 -7.64790 -6.03197 -4.07570 1.01278 1.04765 3.30943 3.37562 3.40117 3.42929 3.46499 3.63682 4.03277 4.27653 4.36899 4.47086 4.65260 4.82392 4.83226 4.88940 5.08494 5.14423 5.18906 5.25678 5.30238 5.32326 5.40210 5.47054 5.52063 5.54604 5.61840 5.69586 5.75507 5.77421 5.87172 5.94233 5.96258 5.99531 6.10960 6.20972 6.25611 6.31681 6.44695 6.74493 6.88586 7.12772 7.33894 7.45378 7.56701 7.93709 8.25130 8.44209 8.92278 9.12595 9.57645 11.04898 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017496 B = 0.002815 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.998924 B = 9944.387116 C =10821.168826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.504 3.496 14 O -0.529 6.529 15 C 0.036 3.964 16 N -0.659 5.659 17 C 0.150 3.850 18 C -0.139 4.139 19 C -0.181 4.181 20 C -0.040 4.040 21 C -0.110 4.110 22 C -0.090 4.090 23 C -0.160 4.160 24 C 0.092 3.908 25 F -0.144 7.144 26 C -0.149 4.149 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.031 0.969 33 H 0.042 0.958 34 H 0.263 0.737 35 H 0.099 0.901 36 H 0.057 0.943 37 H 0.352 0.648 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.147 0.853 45 H 0.133 0.867 46 H 0.131 0.869 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.275 -5.374 20.743 22.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.290 3.710 14 O -0.406 6.406 15 C -0.096 4.096 16 N -0.292 5.292 17 C 0.058 3.942 18 C -0.196 4.196 19 C -0.240 4.240 20 C -0.041 4.041 21 C -0.129 4.129 22 C -0.109 4.109 23 C -0.178 4.178 24 C 0.073 3.927 25 F -0.123 7.123 26 C -0.168 4.168 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.117 0.883 36 H 0.075 0.925 37 H 0.173 0.827 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.164 0.836 45 H 0.151 0.849 46 H 0.149 0.851 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.392 -4.800 20.571 21.801 hybrid contribution -0.037 -0.314 -0.134 0.344 sum -5.430 -5.115 20.437 21.756 Atomic orbital electron populations 1.22225 0.96913 1.01355 1.02228 1.21395 0.93377 0.84385 1.02616 1.48246 1.64003 1.13190 1.07721 1.19245 0.96225 0.93592 0.78096 1.21439 0.96941 1.31797 1.06129 0.92474 1.24932 0.97828 0.94935 0.96434 1.69931 1.35707 1.33526 1.14345 0.86504 0.84763 0.77623 0.78589 1.20707 1.21118 1.19846 1.20174 0.78841 0.87114 0.84860 1.90668 1.44912 1.18022 1.86957 1.22012 1.00261 0.97068 0.90248 1.60363 1.62640 1.06877 0.99307 1.19761 0.93875 0.92856 0.87690 1.21926 1.00555 0.95427 1.01703 1.22602 0.96421 1.02204 1.02780 1.19551 0.97299 0.94593 0.92650 1.21367 0.97727 0.92826 1.00934 1.21093 0.98177 1.00110 0.91474 1.21147 1.03321 0.95106 0.98263 1.17612 1.02623 0.94206 0.78294 1.91484 1.93759 1.91390 1.35645 1.20864 1.04124 1.00187 0.91651 0.92208 0.93266 0.92008 0.89940 0.91905 0.95126 0.93958 0.92761 0.88348 0.92520 0.82748 0.92120 0.91833 0.91232 0.92216 0.91525 0.91740 0.83571 0.84911 0.85081 0.85005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.11 1.63 5.93 -4.04 -0.02 1.60 16 3 N -0.60 -12.21 2.46 -175.07 -0.43 -12.64 16 4 C 0.25 6.38 5.16 -5.19 -0.03 6.35 16 5 C -0.52 -14.79 9.39 -34.44 -0.32 -15.11 16 6 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 9 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.50 10.05 7.71 -10.99 -0.08 9.96 16 14 O -0.53 -12.90 15.78 5.56 0.09 -12.82 16 15 C 0.04 0.50 3.93 -4.98 -0.02 0.48 16 16 N -0.66 -8.74 4.72 -102.40 -0.48 -9.22 16 17 C 0.15 1.55 0.79 -132.75 -0.11 1.45 16 18 C -0.14 -1.35 8.05 37.16 0.30 -1.05 16 19 C -0.18 -1.60 8.04 37.16 0.30 -1.30 16 20 C -0.04 -0.43 4.77 -104.64 -0.50 -0.93 16 21 C -0.11 -1.23 9.14 -39.58 -0.36 -1.59 16 22 C -0.09 -0.89 10.04 -39.59 -0.40 -1.28 16 23 C -0.16 -1.55 10.03 -39.52 -0.40 -1.94 16 24 C 0.09 0.97 7.30 -39.42 -0.29 0.68 16 25 F -0.14 -1.60 17.27 2.25 0.04 -1.56 16 26 C -0.15 -1.50 8.69 -39.51 -0.34 -1.84 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.58 7.22 -51.93 -0.38 0.21 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 31 H 0.06 0.79 6.44 -51.93 -0.33 0.45 16 32 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 33 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.10 1.28 5.56 -51.93 -0.29 0.99 16 36 H 0.06 0.67 5.35 -51.93 -0.28 0.39 16 37 H 0.35 4.83 7.25 -39.29 -0.28 4.55 16 38 H 0.06 0.49 7.38 -51.93 -0.38 0.10 16 39 H 0.06 0.58 6.40 -51.93 -0.33 0.25 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.56 6.40 -51.93 -0.33 0.23 16 43 H 0.06 0.49 7.39 -51.93 -0.38 0.11 16 44 H 0.15 1.79 6.40 -52.48 -0.34 1.45 16 45 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 46 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 47 H 0.13 1.12 7.10 -52.49 -0.37 0.74 16 LS Contribution 380.34 15.07 5.73 5.73 Total: -1.00 -32.65 380.34 -8.34 -40.99 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -7.01 Total: 3.14 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -1.99 Total: -4.64 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: -0.18 Total: -47.71 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.09 Total: -12.82 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.65 -8.34 -40.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179565173.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.379 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds