Wall clock time and date at job start Sat Apr 11 2020 00:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47164 * 2 1 4 4 C 1.46504 * 119.99995 * 269.99818 * 3 2 1 5 5 C 1.50694 * 109.47224 * 269.99893 * 4 3 2 6 6 H 1.08004 * 119.99943 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00389 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99712 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00388 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47216 * 90.00019 * 9 7 5 11 11 H 1.48498 * 109.47513 * 210.00167 * 9 7 5 12 12 H 1.48503 * 109.47087 * 330.00283 * 9 7 5 13 13 C 1.34780 * 120.00266 * 89.99163 * 3 2 1 14 14 O 1.21282 * 120.00115 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99940 * 0.02562 * 13 3 2 16 16 N 1.46895 * 109.47184 * 179.97438 * 15 13 3 17 17 C 1.46904 * 111.00123 * 179.97438 * 16 15 13 18 18 C 1.53003 * 109.46617 * 60.00586 * 17 16 15 19 19 C 1.53001 * 109.47379 * 300.00567 * 17 16 15 20 20 C 1.50695 * 109.47243 * 180.02562 * 17 16 15 21 21 C 1.38266 * 119.98923 * 359.95986 * 20 17 16 22 22 C 1.38226 * 120.05404 * 180.02562 * 21 20 17 23 23 C 1.38217 * 120.02522 * 0.03782 * 22 21 20 24 24 C 1.38434 * 119.97400 * 359.97438 * 23 22 21 25 25 F 1.35099 * 120.02897 * 180.02562 * 24 23 22 26 26 C 1.38176 * 119.98906 * 180.02562 * 20 17 16 27 27 H 1.09001 * 109.47113 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47646 * 300.00293 * 1 2 3 29 29 H 1.09004 * 109.46808 * 60.00503 * 1 2 3 30 30 H 1.08994 * 109.47206 * 239.99862 * 2 1 3 31 31 H 1.09004 * 109.46808 * 119.99497 * 2 1 3 32 32 H 1.09001 * 109.46989 * 29.99829 * 4 3 2 33 33 H 1.09000 * 109.46946 * 149.99569 * 4 3 2 34 34 H 0.96997 * 120.00193 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.47007 * 59.99590 * 15 13 3 36 36 H 1.08994 * 109.47273 * 299.99495 * 15 13 3 37 37 H 1.00900 * 110.99812 * 56.04958 * 16 15 13 38 38 H 1.09004 * 109.46656 * 179.97438 * 18 17 16 39 39 H 1.09001 * 109.46959 * 299.99342 * 18 17 16 40 40 H 1.08993 * 109.47130 * 59.99767 * 18 17 16 41 41 H 1.09004 * 109.46869 * 299.99977 * 19 17 16 42 42 H 1.09001 * 109.46881 * 59.99590 * 19 17 16 43 43 H 1.08994 * 109.46721 * 179.97438 * 19 17 16 44 44 H 1.08008 * 119.97418 * 0.04219 * 21 20 17 45 45 H 1.07998 * 119.98497 * 180.02562 * 22 21 20 46 46 H 1.08003 * 120.01075 * 180.02562 * 23 22 21 47 47 H 1.07996 * 120.01219 * 0.24814 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2309 -1.0957 7 6 4.1492 2.3895 -2.8779 8 7 3.3492 3.1256 -3.6181 9 14 5.9136 2.0966 -3.4167 10 1 5.9777 0.8753 -4.2589 11 1 6.3922 3.2638 -4.2002 12 1 6.7736 1.9179 -2.2194 13 6 2.2428 2.0166 1.1672 14 8 2.6475 3.1599 1.1672 15 6 1.9920 1.3061 2.4723 16 7 2.3106 2.2060 3.5888 17 6 2.0769 1.5459 4.8802 18 6 2.9621 0.3023 4.9847 19 6 0.6066 1.1357 4.9847 20 6 2.4132 2.4978 5.9990 21 6 2.8646 3.7722 5.7099 22 6 3.1740 4.6463 6.7351 23 6 3.0330 4.2467 8.0508 24 6 2.5813 2.9708 8.3415 25 9 2.4425 2.5793 9.6271 26 6 2.2715 2.0961 7.3135 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.5818 1.6876 -2.0284 33 1 2.0955 3.1410 -1.1384 34 1 3.6752 3.5161 -4.4440 35 1 2.6225 0.4189 2.5299 36 1 0.9442 1.0117 2.5302 37 1 1.7854 3.0650 3.5220 38 1 2.7891 -0.1873 5.9431 39 1 2.7184 -0.3861 4.1754 40 1 4.0095 0.5945 4.9102 41 1 -0.0239 2.0217 4.9103 42 1 0.3631 0.4473 4.1754 43 1 0.4335 0.6455 5.9427 44 1 2.9755 4.0853 4.6822 45 1 3.5261 5.6416 6.5080 46 1 3.2743 4.9300 8.8516 47 1 1.9236 1.0989 7.5392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179565173.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:38 Heat of formation + Delta-G solvation = -70.981125 kcal Electronic energy + Delta-G solvation = -27442.683177 eV Core-core repulsion = 23539.176312 eV Total energy + Delta-G solvation = -3903.506866 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -49.87660 -41.14459 -40.33289 -37.96057 -36.86134 -34.90975 -33.26045 -31.61857 -31.36422 -30.54197 -29.40939 -28.23458 -27.29468 -24.89447 -24.27105 -23.55169 -23.35287 -20.55369 -19.99292 -18.82966 -18.50692 -17.68388 -17.44888 -17.12031 -16.96658 -16.62301 -16.57346 -16.13715 -15.77480 -15.45522 -15.10744 -14.70064 -14.65685 -14.54661 -14.33832 -14.08858 -14.02288 -13.74004 -13.52918 -13.22732 -13.10999 -13.02278 -12.89382 -12.80791 -12.65612 -12.53459 -12.45507 -12.26971 -12.18256 -12.11083 -11.84303 -11.69512 -11.54576 -10.62932 -10.51961 -9.92419 -9.62478 -9.43678 -9.30090 -8.21078 -6.35566 0.21845 0.26951 1.36525 1.39749 1.50059 1.89846 2.26756 2.42442 2.64173 3.05391 3.08587 3.33804 3.59556 3.74991 3.89285 4.07934 4.10963 4.12948 4.17223 4.30316 4.33057 4.44871 4.46558 4.48268 4.66001 4.68765 4.75964 4.81667 4.93765 4.95764 5.01210 5.06001 5.07729 5.10667 5.16150 5.23259 5.24448 5.35958 5.40507 5.45421 5.50166 5.60301 5.87874 5.95677 6.05742 6.09068 6.31294 6.73029 6.86977 7.30858 7.56003 8.85766 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017496 B = 0.002815 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.998924 B = 9944.387116 C =10821.168826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.264 3.736 5 C -0.540 4.540 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.263 1.263 11 H -0.282 1.282 12 H -0.274 1.274 13 C 0.494 3.506 14 O -0.586 6.586 15 C 0.056 3.944 16 N -0.676 5.676 17 C 0.152 3.848 18 C -0.139 4.139 19 C -0.178 4.178 20 C -0.046 4.046 21 C -0.127 4.127 22 C -0.093 4.093 23 C -0.160 4.160 24 C 0.080 3.920 25 F -0.148 7.148 26 C -0.146 4.146 27 H 0.095 0.905 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.020 0.980 33 H -0.005 1.005 34 H 0.266 0.734 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.346 0.654 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.050 0.950 41 H 0.052 0.948 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.129 0.871 45 H 0.148 0.852 46 H 0.150 0.850 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.360 -7.744 22.491 24.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.142 3.858 5 C -0.579 4.579 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.188 1.188 11 H -0.207 1.207 12 H -0.198 1.198 13 C 0.282 3.718 14 O -0.466 6.466 15 C -0.076 4.076 16 N -0.309 5.309 17 C 0.061 3.939 18 C -0.196 4.196 19 C -0.237 4.237 20 C -0.047 4.047 21 C -0.146 4.146 22 C -0.111 4.111 23 C -0.179 4.179 24 C 0.061 3.939 25 F -0.127 7.127 26 C -0.165 4.165 27 H 0.114 0.886 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.038 0.962 33 H 0.013 0.987 34 H 0.075 0.925 35 H 0.135 0.865 36 H 0.106 0.894 37 H 0.166 0.834 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.147 0.853 45 H 0.166 0.834 46 H 0.167 0.833 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.503 -7.228 22.342 24.118 hybrid contribution -0.034 0.459 -0.643 0.791 sum -5.536 -6.769 21.698 23.394 Atomic orbital electron populations 1.22154 0.94605 1.03486 1.01611 1.21741 0.95254 0.81418 1.03900 1.48270 1.64142 1.15103 1.06176 1.18658 0.95118 0.91477 0.80555 1.21716 0.97961 1.31823 1.06355 0.92972 1.25847 1.02305 0.94523 0.96506 1.70052 1.37763 1.34318 1.14811 0.85433 0.79139 0.78169 0.78178 1.18785 1.20719 1.19838 1.21291 0.77312 0.86699 0.86482 1.90635 1.47351 1.20715 1.87914 1.21887 1.02356 0.96496 0.86848 1.60340 1.63248 1.06933 1.00387 1.19832 0.95316 0.92776 0.85926 1.21956 0.99175 0.95194 1.03309 1.22570 0.94680 1.02255 1.04147 1.19621 0.97452 0.94445 0.93173 1.21365 0.98922 0.93782 1.00513 1.21273 0.97847 1.00654 0.91334 1.21366 1.02659 0.95255 0.98607 1.17807 1.03090 0.94739 0.78292 1.91475 1.93842 1.91455 1.35880 1.20987 1.03622 1.00911 0.91013 0.88599 0.92092 0.94465 0.91150 0.88104 0.96165 0.98672 0.92469 0.86525 0.89437 0.83441 0.90055 0.90842 0.93119 0.92841 0.90541 0.90038 0.85304 0.83420 0.83269 0.83164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 10.24 71.98 0.74 -2.95 16 2 C 0.10 2.86 5.93 86.38 0.51 3.38 16 3 N -0.60 -25.01 2.46 -826.17 -2.03 -27.04 16 4 C 0.26 14.24 5.16 85.63 0.44 14.68 16 5 C -0.54 -31.34 9.39 25.60 0.24 -31.10 16 6 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 7 C 0.01 0.40 5.46 84.65 0.46 0.87 16 8 N -0.93 -56.68 13.29 21.45 0.28 -56.40 16 9 Si 0.97 45.34 29.54 68.60 2.03 47.37 16 10 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 13 C 0.49 19.90 7.71 87.66 0.68 20.57 16 14 O -0.59 -29.97 15.78 -3.03 -0.05 -30.02 16 15 C 0.06 1.45 3.93 85.56 0.34 1.78 16 16 N -0.68 -17.45 4.72 -477.89 -2.26 -19.70 16 17 C 0.15 2.86 0.79 2.78 0.00 2.86 16 18 C -0.14 -2.31 8.05 71.98 0.58 -1.73 16 19 C -0.18 -2.58 8.04 71.98 0.58 -2.00 16 20 C -0.05 -0.93 4.77 -19.87 -0.09 -1.03 16 21 C -0.13 -2.85 9.14 22.27 0.20 -2.65 16 22 C -0.09 -1.77 10.04 22.26 0.22 -1.55 16 23 C -0.16 -2.89 10.03 22.31 0.22 -2.67 16 24 C 0.08 1.56 7.30 22.38 0.16 1.72 16 25 F -0.15 -3.03 17.27 44.97 0.78 -2.25 16 26 C -0.15 -2.64 8.69 22.31 0.19 -2.45 16 27 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.06 1.26 7.22 -2.39 -0.02 1.24 16 29 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 2.21 8.07 -2.39 -0.02 2.19 16 31 H 0.10 2.15 6.44 -2.39 -0.02 2.14 16 32 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 33 H 0.00 -0.30 7.42 -2.39 -0.02 -0.32 16 34 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 35 H 0.12 2.65 5.56 -2.39 -0.01 2.63 16 36 H 0.09 1.76 5.35 -2.39 -0.01 1.75 16 37 H 0.35 9.65 7.25 -89.69 -0.65 9.00 16 38 H 0.08 1.01 7.38 -2.39 -0.02 1.00 16 39 H 0.07 1.07 6.40 -2.39 -0.02 1.05 16 40 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 42 H 0.08 0.96 6.40 -2.39 -0.02 0.95 16 43 H 0.08 0.92 7.39 -2.39 -0.02 0.91 16 44 H 0.13 3.32 6.40 -2.91 -0.02 3.30 16 45 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 46 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 47 H 0.15 2.07 7.10 -2.91 -0.02 2.05 16 Total: -1.00 -74.89 380.34 4.57 -70.32 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.33 Total: 19.99 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: 5.48 Total: -2.27 kcal Atomic # 7 Polarization: -99.14 SS G_CDS: -4.00 Total: -103.14 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.05 Total: -30.02 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.78 Total: -2.25 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -74.89 4.57 -70.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179565173.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.658 kcal (2) G-P(sol) polarization free energy of solvation -74.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds