Wall clock time and date at job start Sat Apr 11 2020 00:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47034 * 2 1 4 4 N 1.46902 * 109.47043 * 120.00257 * 2 1 3 5 5 C 1.46846 * 111.00385 * 50.79036 * 4 2 1 6 6 C 1.53035 * 109.52386 * 185.84083 * 5 4 2 7 7 C 1.53120 * 109.27749 * 300.81591 * 6 5 4 8 8 N 1.46503 * 109.52118 * 177.55993 * 7 6 5 9 9 C 1.39932 * 119.99730 * 85.32202 * 8 7 6 10 10 C 1.38712 * 120.07826 * 359.72271 * 9 8 7 11 11 C 1.38214 * 120.01279 * 179.69962 * 10 9 8 12 12 C 1.38535 * 120.17770 * 0.60119 * 11 10 9 13 13 F 1.35092 * 119.91991 * 179.69980 * 12 11 10 14 14 C 1.38357 * 120.15574 * 359.67468 * 12 11 10 15 15 C 1.38727 * 119.98135 * 0.02562 * 14 12 11 16 16 O 1.35795 * 120.08456 * 180.02562 * 15 14 12 17 17 C 1.34799 * 117.00220 * 354.40357 * 16 15 14 18 18 H 1.08003 * 119.99902 * 5.06235 * 17 16 15 19 19 C 1.38625 * 120.00222 * 185.06174 * 17 16 15 20 20 N 1.31580 * 120.00001 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00180 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47144 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47122 * 120.00273 * 21 19 17 24 24 H 1.48505 * 109.47074 * 240.00221 * 21 19 17 25 25 C 1.53118 * 109.15714 * 57.65573 * 7 6 5 26 26 C 1.46849 * 110.99718 * 174.99751 * 4 2 1 27 27 H 1.09003 * 109.46779 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46919 * 299.99397 * 1 2 3 29 29 H 1.08992 * 109.47430 * 60.00123 * 1 2 3 30 30 H 1.09004 * 109.47019 * 239.99871 * 2 1 3 31 31 H 1.09000 * 109.47166 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47631 * 299.99998 * 3 2 1 33 33 H 1.09004 * 109.47323 * 60.00057 * 3 2 1 34 34 H 1.09008 * 109.45863 * 305.85466 * 5 4 2 35 35 H 1.09004 * 109.46315 * 65.82229 * 5 4 2 36 36 H 1.09005 * 109.49928 * 180.87978 * 6 5 4 37 37 H 1.08995 * 109.50622 * 60.76233 * 6 5 4 38 38 H 1.08996 * 109.52419 * 297.75330 * 7 6 5 39 39 H 0.96994 * 120.00081 * 265.31427 * 8 7 6 40 40 H 1.08004 * 119.99309 * 359.97438 * 10 9 8 41 41 H 1.08006 * 119.91112 * 180.27688 * 11 10 9 42 42 H 1.07991 * 120.00563 * 180.02562 * 14 12 11 43 43 H 0.96992 * 120.00220 * 180.02562 * 20 19 17 44 44 H 1.09007 * 109.50207 * 182.40237 * 25 7 6 45 45 H 1.08999 * 109.50256 * 62.28713 * 25 7 6 46 46 H 1.08998 * 109.46567 * 294.17440 * 26 4 2 47 47 H 1.09000 * 109.46465 * 54.14796 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.3781 -2.0050 1.3482 6 6 1.8004 -2.6330 2.6783 7 6 3.3240 -2.7830 2.7054 8 7 3.7392 -3.3298 3.9996 9 6 3.7406 -4.7137 4.2063 10 6 3.3437 -5.5690 3.1890 11 6 3.3515 -6.9361 3.3926 12 6 3.7432 -7.4558 4.6156 13 9 3.7431 -8.7925 4.8109 14 6 4.1350 -6.6090 5.6372 15 6 4.1356 -5.2361 5.4379 16 8 4.5202 -4.4031 6.4390 17 6 4.7785 -4.9644 7.6371 18 1 4.7556 -6.0387 7.7462 19 6 5.0734 -4.1629 8.7290 20 7 5.1007 -2.8541 8.5961 21 14 5.4306 -4.9408 10.3893 22 1 5.3365 -6.4182 10.2742 23 1 6.7986 -4.5650 10.8279 24 1 4.4411 -4.4573 11.3856 25 6 3.9679 -1.4090 2.5000 26 6 3.4827 -0.8165 1.1750 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 0.2949 -1.8837 1.3315 35 1 1.6834 -2.6537 0.5271 36 1 1.3363 -3.6139 2.7812 37 1 1.4832 -1.9916 3.5005 38 1 3.6380 -3.4554 1.9071 39 1 4.0132 -2.7325 4.7130 40 1 3.0327 -5.1669 2.2360 41 1 3.0464 -7.6007 2.5978 42 1 4.4403 -7.0167 6.5894 43 1 5.3075 -2.2933 9.3600 44 1 5.0525 -1.5154 2.4757 45 1 3.6848 -0.7483 3.3195 46 1 3.7782 -1.4708 0.3548 47 1 3.9283 0.1680 1.0327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180464000.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:51 Heat of formation + Delta-G solvation = -61.351820 kcal Electronic energy + Delta-G solvation = -27557.292133 eV Core-core repulsion = 23654.202825 eV Total energy + Delta-G solvation = -3903.089308 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.63984 -41.08060 -40.25626 -38.33211 -36.88630 -34.36559 -34.15136 -32.05918 -31.07270 -30.91827 -28.58091 -28.07860 -27.30735 -24.88029 -23.81841 -23.33034 -22.53601 -21.23475 -20.73202 -19.99763 -19.25188 -17.80835 -17.66057 -16.99772 -16.94628 -16.45885 -16.00150 -15.86691 -15.83864 -15.46907 -15.43003 -15.27023 -14.98814 -14.84157 -14.72804 -14.06281 -13.81126 -13.72368 -13.58925 -13.29424 -13.26715 -13.01771 -12.74010 -12.71716 -12.51966 -12.29820 -12.16631 -12.13118 -12.11899 -11.93223 -11.80388 -11.57548 -11.42881 -11.20780 -10.79711 -10.59268 -9.42650 -9.18720 -8.46435 -8.01156 -6.08582 0.48703 0.62329 1.35181 1.41425 1.51581 2.16118 2.57384 2.77708 2.93072 3.10923 3.33952 3.65064 3.76611 3.88216 3.98557 4.08758 4.09809 4.18581 4.26429 4.32115 4.42253 4.47186 4.47905 4.52719 4.61640 4.67076 4.80919 4.85180 4.91540 4.92223 4.98669 5.02216 5.02922 5.05318 5.10209 5.20871 5.23689 5.34031 5.35846 5.37663 5.44461 5.46634 5.49173 5.97685 6.05470 6.21383 6.26059 6.59376 6.84128 6.99495 7.76489 8.75624 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012793 B = 0.003322 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.243976 B = 8427.328760 C =10165.946067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.075 3.925 3 C -0.143 4.143 4 N -0.548 5.548 5 C 0.061 3.939 6 C -0.126 4.126 7 C 0.158 3.842 8 N -0.741 5.741 9 C 0.158 3.842 10 C -0.137 4.137 11 C -0.163 4.163 12 C 0.063 3.937 13 F -0.156 7.156 14 C -0.246 4.246 15 C 0.080 3.920 16 O -0.215 6.215 17 C -0.408 4.408 18 H 0.092 0.908 19 C -0.015 4.015 20 N -0.911 5.911 21 Si 1.010 2.990 22 H -0.259 1.259 23 H -0.268 1.268 24 H -0.268 1.268 25 C -0.119 4.119 26 C 0.066 3.934 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.043 0.957 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.082 0.918 39 H 0.395 0.605 40 H 0.159 0.841 41 H 0.156 0.844 42 H 0.121 0.879 43 H 0.272 0.728 44 H 0.071 0.929 45 H 0.060 0.940 46 H 0.043 0.957 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.888 4.466 -18.704 20.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.033 4.033 3 C -0.200 4.200 4 N -0.274 5.274 5 C -0.067 4.067 6 C -0.166 4.166 7 C 0.053 3.947 8 N -0.370 5.370 9 C 0.055 3.945 10 C -0.161 4.161 11 C -0.183 4.183 12 C 0.042 3.958 13 F -0.135 7.135 14 C -0.268 4.268 15 C 0.027 3.973 16 O -0.122 6.122 17 C -0.484 4.484 18 H 0.110 0.890 19 C -0.213 4.213 20 N -0.549 5.549 21 Si 0.831 3.169 22 H -0.183 1.183 23 H -0.193 1.193 24 H -0.193 1.193 25 C -0.157 4.157 26 C -0.062 4.062 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.229 0.771 40 H 0.176 0.824 41 H 0.174 0.826 42 H 0.139 0.861 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.061 0.939 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.997 5.170 -18.351 20.309 hybrid contribution 0.687 -0.877 1.091 1.560 sum -6.310 4.292 -17.260 18.872 Atomic orbital electron populations 1.21950 0.93791 1.02304 1.02481 1.21666 0.96086 0.95298 0.90242 1.21852 1.01058 0.94846 1.02259 1.61981 1.05609 1.20141 1.39683 1.22104 1.00115 0.88801 0.95687 1.22040 0.95887 1.00598 0.98046 1.21010 0.93939 0.94814 0.84917 1.44679 1.74638 1.02204 1.15512 1.17413 1.00103 0.85690 0.91280 1.20363 1.06007 0.91396 0.98319 1.20787 1.05877 0.95844 0.95786 1.17321 1.06572 0.76213 0.95689 1.91376 1.95030 1.31108 1.95960 1.20850 1.12085 0.93000 1.00830 1.19067 0.99005 0.89363 0.89835 1.83859 1.76342 1.33971 1.18043 1.21683 1.49063 0.93319 0.84328 0.89047 1.26350 0.96505 0.95857 1.02636 1.70149 1.47481 1.04605 1.32712 0.84635 0.78446 0.78445 0.75400 1.18258 1.19288 1.19347 1.21786 1.00126 0.95125 0.98707 1.22006 0.87797 1.01098 0.95342 0.92132 0.92654 0.90869 0.93825 0.92583 0.90951 0.92791 0.89262 0.93888 0.91360 0.92949 0.89981 0.77095 0.82403 0.82609 0.86138 0.91928 0.91015 0.92163 0.93914 0.89328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.65 71.98 0.62 -1.35 16 2 C 0.07 1.13 2.69 44.91 0.12 1.25 16 3 C -0.14 -1.97 9.10 71.98 0.66 -1.31 16 4 N -0.55 -10.47 4.52 -871.10 -3.94 -14.41 16 5 C 0.06 1.15 5.00 86.33 0.43 1.59 16 6 C -0.13 -3.10 5.63 30.65 0.17 -2.92 16 7 C 0.16 4.17 2.21 45.07 0.10 4.27 16 8 N -0.74 -26.77 5.25 -318.03 -1.67 -28.44 16 9 C 0.16 6.30 6.66 38.26 0.25 6.55 16 10 C -0.14 -4.43 8.89 22.38 0.20 -4.23 16 11 C -0.16 -5.34 10.02 22.33 0.22 -5.11 16 12 C 0.06 2.51 7.29 22.37 0.16 2.67 16 13 F -0.16 -5.99 17.26 44.97 0.78 -5.22 16 14 C -0.25 -11.41 9.14 22.42 0.20 -11.20 16 15 C 0.08 3.90 6.67 22.69 0.15 4.05 16 16 O -0.22 -12.34 9.00 -22.93 -0.21 -12.55 16 17 C -0.41 -23.52 9.49 67.91 0.64 -22.87 16 18 H 0.09 5.04 5.21 -2.91 -0.02 5.02 16 19 C -0.02 -0.85 5.49 84.82 0.47 -0.39 16 20 N -0.91 -54.17 13.67 21.61 0.30 -53.88 16 21 Si 1.01 43.26 29.55 68.60 2.03 45.29 16 22 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 25 C -0.12 -2.86 5.57 30.65 0.17 -2.69 16 26 C 0.07 1.24 5.29 86.33 0.46 1.70 16 27 H 0.06 0.78 6.19 -2.39 -0.01 0.77 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.04 0.63 8.13 -2.38 -0.02 0.61 16 31 H 0.06 0.76 6.41 -2.39 -0.02 0.75 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 0.86 8.14 -2.38 -0.02 0.85 16 34 H 0.09 1.55 5.83 -2.38 -0.01 1.54 16 35 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.07 1.70 7.72 -2.38 -0.02 1.68 16 37 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.08 1.97 6.50 -2.39 -0.02 1.95 16 39 H 0.40 16.55 7.97 -92.71 -0.74 15.81 16 40 H 0.16 3.91 6.09 -2.91 -0.02 3.90 16 41 H 0.16 3.93 8.06 -2.91 -0.02 3.91 16 42 H 0.12 5.85 5.64 -2.92 -0.02 5.83 16 43 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 44 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 45 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 46 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.09 1.52 6.18 -2.39 -0.01 1.51 16 Total: -1.00 -65.43 369.87 2.57 -62.86 By element: Atomic # 1 Polarization: 36.10 SS G_CDS: 0.25 Total: 36.35 kcal Atomic # 6 Polarization: -35.04 SS G_CDS: 5.04 Total: -30.01 kcal Atomic # 7 Polarization: -91.41 SS G_CDS: -5.32 Total: -96.73 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -0.21 Total: -12.55 kcal Atomic # 9 Polarization: -5.99 SS G_CDS: 0.78 Total: -5.22 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -65.43 2.57 -62.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180464000.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.505 kcal (2) G-P(sol) polarization free energy of solvation -65.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds