Wall clock time and date at job start Sat Apr 11 2020 00:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47167 * 2 1 4 4 C 1.53003 * 109.46987 * 119.99510 * 2 1 3 5 5 C 1.53003 * 109.47027 * 174.99831 * 4 2 1 6 6 N 1.46504 * 109.46874 * 180.02562 * 5 4 2 7 7 C 1.46498 * 120.00068 * 269.99879 * 6 5 4 8 8 C 1.50690 * 109.47387 * 254.35256 * 7 6 5 9 9 H 1.08008 * 120.00141 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00272 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00163 * 179.97438 * 10 8 7 12 12 Si 1.86804 * 119.99895 * 359.97438 * 10 8 7 13 13 H 1.48493 * 109.47151 * 89.99738 * 12 10 8 14 14 H 1.48493 * 109.47195 * 210.00479 * 12 10 8 15 15 H 1.48507 * 109.46868 * 330.00146 * 12 10 8 16 16 C 1.34772 * 119.99777 * 90.00615 * 6 5 4 17 17 O 1.21588 * 120.00584 * 3.35233 * 16 6 5 18 18 N 1.34776 * 119.99978 * 183.35864 * 16 6 5 19 19 C 1.46506 * 119.99925 * 14.44383 * 18 16 6 20 20 C 1.40058 * 120.00122 * 194.45082 * 18 16 6 21 21 C 1.38848 * 120.04540 * 187.45865 * 20 18 16 22 22 C 1.38109 * 119.95783 * 180.27498 * 21 20 18 23 23 C 1.38475 * 120.04465 * 359.49259 * 22 21 20 24 24 F 1.35094 * 119.96096 * 180.25745 * 23 22 21 25 25 C 1.38474 * 120.08412 * 0.50660 * 23 22 21 26 26 C 1.38114 * 120.04691 * 359.74514 * 25 23 22 27 27 H 1.09003 * 109.47394 * 300.00502 * 1 2 3 28 28 H 1.09005 * 109.46899 * 59.99896 * 1 2 3 29 29 H 1.08994 * 109.47151 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47394 * 239.99498 * 2 1 3 31 31 H 1.09005 * 109.47180 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46637 * 299.99537 * 3 2 1 33 33 H 1.08995 * 109.47345 * 60.00148 * 3 2 1 34 34 H 1.09007 * 109.46741 * 55.00353 * 4 2 1 35 35 H 1.08989 * 109.47515 * 295.00405 * 4 2 1 36 36 H 1.09002 * 109.46896 * 60.00172 * 5 4 2 37 37 H 1.09000 * 109.47304 * 300.00097 * 5 4 2 38 38 H 1.09008 * 109.47099 * 14.35192 * 7 6 5 39 39 H 1.09000 * 109.46904 * 134.34701 * 7 6 5 40 40 H 0.96999 * 119.99527 * 179.97438 * 11 10 8 41 41 H 1.08993 * 109.47450 * 290.94641 * 19 18 16 42 42 H 1.09004 * 109.46870 * 50.94793 * 19 18 16 43 43 H 1.09005 * 109.46978 * 170.94272 * 19 18 16 44 44 H 1.08002 * 120.01801 * 359.97438 * 21 20 18 45 45 H 1.07999 * 119.98272 * 179.74609 * 22 21 20 46 46 H 1.08003 * 119.97422 * 179.72953 * 25 23 22 47 47 H 1.07999 * 120.02069 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1881 6 7 4.0530 -1.5221 2.3840 7 6 4.4014 -0.7548 3.5824 8 6 5.9007 -0.6924 3.7207 9 1 6.5311 -1.1763 2.9892 10 6 6.4678 -0.0185 4.7815 11 7 7.7762 0.0355 4.9024 12 14 5.3775 0.8178 6.0470 13 1 5.0670 -0.1370 7.1411 14 1 6.0836 1.9985 6.6058 15 1 4.1149 1.2566 5.3999 16 6 4.1817 -2.8636 2.3817 17 8 3.9511 -3.4948 1.3684 18 7 4.5660 -3.5057 3.5027 19 6 4.5387 -2.8095 4.7915 20 6 4.9915 -4.8384 3.4355 21 6 5.2393 -5.5487 4.6025 22 6 5.6643 -6.8610 4.5341 23 6 5.8333 -7.4717 3.3028 24 9 6.2440 -8.7570 3.2379 25 6 5.5866 -6.7650 2.1378 26 6 5.1665 -5.4509 2.2019 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6053 -1.7198 1.2952 35 1 1.7516 -0.1583 2.1370 36 1 3.9994 0.1676 1.1421 37 1 3.8532 -1.3940 0.3004 38 1 4.0022 0.2558 3.4957 39 1 3.9754 -1.2396 4.4608 40 1 8.1751 0.5100 5.6485 41 1 5.3094 -2.0389 4.8046 42 1 3.5614 -2.3485 4.9347 43 1 4.7248 -3.5233 5.5940 44 1 5.1044 -5.0737 5.5631 45 1 5.8611 -7.4126 5.4415 46 1 5.7232 -7.2418 1.1783 47 1 4.9746 -4.9000 1.2930 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190621435.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:51:02 Heat of formation + Delta-G solvation = 5.988714 kcal Electronic energy + Delta-G solvation = -28269.179424 eV Core-core repulsion = 24369.010221 eV Total energy + Delta-G solvation = -3900.169203 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -48.52249 -40.70982 -38.38577 -36.75672 -35.88207 -34.55254 -32.80963 -30.83209 -30.20443 -28.61926 -28.17314 -27.11778 -25.84322 -23.65626 -22.90964 -22.52009 -21.37823 -19.89347 -19.28754 -17.46494 -17.39785 -16.98807 -16.40131 -15.76401 -15.44177 -15.22445 -15.02644 -14.88000 -14.35362 -14.22628 -14.05495 -13.89878 -13.38998 -13.18677 -12.99901 -12.78878 -12.68997 -12.60566 -12.46206 -12.22001 -12.16336 -11.98097 -11.77538 -11.36303 -11.08280 -10.93656 -10.86930 -10.82246 -10.56556 -10.39600 -10.29817 -9.94842 -9.61669 -9.53578 -9.05570 -8.84901 -8.77832 -7.92918 -7.15510 -6.41137 -4.39621 1.50998 1.58512 2.98805 3.03683 3.12005 3.15925 3.51629 4.07198 4.11687 4.26072 4.64335 4.87014 4.94971 4.98961 5.03132 5.05463 5.12347 5.43452 5.45373 5.58968 5.62070 5.71007 5.71603 5.77754 5.86711 5.88460 5.90415 5.93000 5.96807 6.11085 6.15530 6.24957 6.27566 6.33479 6.44387 6.44664 6.51765 6.55046 6.60134 6.69301 6.87265 6.94856 7.18472 7.26418 7.44266 7.53300 8.11723 8.38448 8.67562 9.01906 9.15008 10.69952 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.009133 B = 0.004886 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.216741 B = 5728.936837 C = 8152.884769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.150 4.150 4 C -0.130 4.130 5 C 0.134 3.866 6 N -0.599 5.599 7 C 0.158 3.842 8 C -0.535 4.535 9 H 0.080 0.920 10 C 0.077 3.923 11 N -0.878 5.878 12 Si 0.864 3.136 13 H -0.268 1.268 14 H -0.280 1.280 15 H -0.261 1.261 16 C 0.715 3.285 17 O -0.594 6.594 18 N -0.552 5.552 19 C 0.010 3.990 20 C 0.191 3.809 21 C -0.148 4.148 22 C -0.124 4.124 23 C 0.045 3.955 24 F -0.151 7.151 25 C -0.125 4.125 26 C -0.138 4.138 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.035 0.965 39 H 0.066 0.934 40 H 0.270 0.730 41 H 0.155 0.845 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.137 0.863 45 H 0.132 0.868 46 H 0.131 0.869 47 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.739 -3.375 -2.360 10.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.208 4.208 4 C -0.169 4.169 5 C 0.010 3.990 6 N -0.331 5.331 7 C 0.038 3.962 8 C -0.573 4.573 9 H 0.098 0.902 10 C -0.128 4.128 11 N -0.514 5.514 12 Si 0.689 3.311 13 H -0.193 1.193 14 H -0.205 1.205 15 H -0.185 1.185 16 C 0.419 3.581 17 O -0.475 6.475 18 N -0.273 5.273 19 C -0.130 4.130 20 C 0.093 3.907 21 C -0.170 4.170 22 C -0.143 4.143 23 C 0.025 3.975 24 F -0.130 7.130 25 C -0.145 4.145 26 C -0.158 4.158 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.053 0.947 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.171 0.829 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.154 0.846 45 H 0.149 0.851 46 H 0.149 0.851 47 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -9.727 -3.487 -2.765 10.696 hybrid contribution -0.249 0.400 0.964 1.073 sum -9.976 -3.087 -1.800 10.597 Atomic orbital electron populations 1.21821 0.95529 1.01512 1.01356 1.21045 0.95425 0.96308 0.98478 1.21915 1.01616 0.95864 1.01367 1.22058 0.96589 1.00619 0.97625 1.21356 0.92712 0.97274 0.87613 1.47094 1.66383 1.03699 1.15919 1.21280 0.97220 0.92660 0.85073 1.21303 0.89841 1.34803 1.11334 0.90186 1.24937 0.94974 0.95106 0.97795 1.69888 1.09627 1.40952 1.30896 0.87039 0.81390 0.80437 0.82220 1.19298 1.20520 1.18526 1.15758 0.77700 0.82281 0.82368 1.90610 1.58433 1.65573 1.32921 1.44327 1.64737 1.09651 1.08605 1.23898 1.05945 1.00370 0.82751 1.17811 0.95241 0.83469 0.94155 1.20681 1.04804 0.93875 0.97600 1.20759 1.02031 0.95156 0.96398 1.17626 1.05570 0.79556 0.94788 1.91429 1.88619 1.35643 1.97330 1.21045 1.01298 0.95004 0.97154 1.22056 0.99879 0.94392 0.99500 0.92883 0.92979 0.92853 0.91103 0.92076 0.93082 0.92745 0.91857 0.92017 0.90237 0.90511 0.94696 0.91687 0.91961 0.82853 0.91746 0.92033 0.84580 0.85057 0.85132 0.80633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.19 37.16 0.34 -1.15 16 2 C -0.09 -1.09 2.92 -90.62 -0.26 -1.36 16 3 C -0.15 -1.66 8.95 37.16 0.33 -1.33 16 4 C -0.13 -1.84 5.01 -26.73 -0.13 -1.98 16 5 C 0.13 2.24 5.13 -4.04 -0.02 2.22 16 6 N -0.60 -11.72 2.53 -180.80 -0.46 -12.18 16 7 C 0.16 3.22 3.86 -5.20 -0.02 3.20 16 8 C -0.53 -13.01 7.28 -34.44 -0.25 -13.26 16 9 H 0.08 2.28 8.06 -52.48 -0.42 1.85 16 10 C 0.08 1.92 5.02 -17.82 -0.09 1.83 16 11 N -0.88 -23.85 13.96 55.43 0.77 -23.08 16 12 Si 0.86 17.94 27.18 -169.99 -4.62 13.32 16 13 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 14 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 15 H -0.26 -5.13 6.54 56.52 0.37 -4.76 16 16 C 0.71 14.77 7.74 -86.92 -0.67 14.10 16 17 O -0.59 -12.81 12.64 5.29 0.07 -12.74 16 18 N -0.55 -10.77 3.06 -143.28 -0.44 -11.21 16 19 C 0.01 0.17 8.23 59.85 0.49 0.67 16 20 C 0.19 3.54 6.48 -83.65 -0.54 2.99 16 21 C -0.15 -2.36 9.32 -39.40 -0.37 -2.73 16 22 C -0.12 -1.83 10.02 -39.54 -0.40 -2.23 16 23 C 0.05 0.71 7.30 -39.41 -0.29 0.42 16 24 F -0.15 -2.33 17.26 2.25 0.04 -2.30 16 25 C -0.13 -2.01 10.02 -39.54 -0.40 -2.41 16 26 C -0.14 -2.51 8.91 -39.40 -0.35 -2.86 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.71 6.56 -51.93 -0.34 0.37 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 35 H 0.06 0.88 8.14 -51.94 -0.42 0.45 16 36 H 0.08 1.29 6.48 -51.93 -0.34 0.96 16 37 H 0.08 1.33 7.37 -51.93 -0.38 0.95 16 38 H 0.03 0.70 7.01 -51.92 -0.36 0.34 16 39 H 0.07 1.26 2.68 -73.60 -0.20 1.06 16 40 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 41 H 0.16 3.23 2.88 -51.93 -0.15 3.09 16 42 H 0.06 1.07 6.24 -51.93 -0.32 0.74 16 43 H 0.06 0.95 5.35 -51.93 -0.28 0.67 16 44 H 0.14 1.92 5.76 -52.49 -0.30 1.61 16 45 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 46 H 0.13 1.80 8.06 -52.48 -0.42 1.37 16 47 H 0.18 3.48 4.97 -53.49 -0.27 3.21 16 LS Contribution 365.68 15.07 5.51 5.51 Total: -1.00 -27.38 365.68 -8.51 -35.89 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -6.76 Total: 10.65 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -2.63 Total: -3.87 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -0.12 Total: -46.47 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.07 Total: -12.74 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.04 Total: -2.30 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -4.62 Total: 13.32 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -27.38 -8.51 -35.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190621435.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.879 kcal (2) G-P(sol) polarization free energy of solvation -27.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds