Wall clock time and date at job start Sat Apr 11 2020 00:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47167 * 2 1 4 4 C 1.53003 * 109.46987 * 119.99510 * 2 1 3 5 5 C 1.53003 * 109.47027 * 174.99831 * 4 2 1 6 6 N 1.46504 * 109.46874 * 180.02562 * 5 4 2 7 7 C 1.46498 * 120.00068 * 269.99879 * 6 5 4 8 8 C 1.50690 * 109.47387 * 254.35256 * 7 6 5 9 9 H 1.08008 * 120.00141 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00272 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00163 * 179.97438 * 10 8 7 12 12 Si 1.86804 * 119.99895 * 359.97438 * 10 8 7 13 13 H 1.48493 * 109.47151 * 89.99738 * 12 10 8 14 14 H 1.48493 * 109.47195 * 210.00479 * 12 10 8 15 15 H 1.48507 * 109.46868 * 330.00146 * 12 10 8 16 16 C 1.34772 * 119.99777 * 90.00615 * 6 5 4 17 17 O 1.21588 * 120.00584 * 3.35233 * 16 6 5 18 18 N 1.34776 * 119.99978 * 183.35864 * 16 6 5 19 19 C 1.46506 * 119.99925 * 14.44383 * 18 16 6 20 20 C 1.40058 * 120.00122 * 194.45082 * 18 16 6 21 21 C 1.38848 * 120.04540 * 187.45865 * 20 18 16 22 22 C 1.38109 * 119.95783 * 180.27498 * 21 20 18 23 23 C 1.38475 * 120.04465 * 359.49259 * 22 21 20 24 24 F 1.35094 * 119.96096 * 180.25745 * 23 22 21 25 25 C 1.38474 * 120.08412 * 0.50660 * 23 22 21 26 26 C 1.38114 * 120.04691 * 359.74514 * 25 23 22 27 27 H 1.09003 * 109.47394 * 300.00502 * 1 2 3 28 28 H 1.09005 * 109.46899 * 59.99896 * 1 2 3 29 29 H 1.08994 * 109.47151 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47394 * 239.99498 * 2 1 3 31 31 H 1.09005 * 109.47180 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46637 * 299.99537 * 3 2 1 33 33 H 1.08995 * 109.47345 * 60.00148 * 3 2 1 34 34 H 1.09007 * 109.46741 * 55.00353 * 4 2 1 35 35 H 1.08989 * 109.47515 * 295.00405 * 4 2 1 36 36 H 1.09002 * 109.46896 * 60.00172 * 5 4 2 37 37 H 1.09000 * 109.47304 * 300.00097 * 5 4 2 38 38 H 1.09008 * 109.47099 * 14.35192 * 7 6 5 39 39 H 1.09000 * 109.46904 * 134.34701 * 7 6 5 40 40 H 0.96999 * 119.99527 * 179.97438 * 11 10 8 41 41 H 1.08993 * 109.47450 * 290.94641 * 19 18 16 42 42 H 1.09004 * 109.46870 * 50.94793 * 19 18 16 43 43 H 1.09005 * 109.46978 * 170.94272 * 19 18 16 44 44 H 1.08002 * 120.01801 * 359.97438 * 21 20 18 45 45 H 1.07999 * 119.98272 * 179.74609 * 22 21 20 46 46 H 1.08003 * 119.97422 * 179.72953 * 25 23 22 47 47 H 1.07999 * 120.02069 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1881 6 7 4.0530 -1.5221 2.3840 7 6 4.4014 -0.7548 3.5824 8 6 5.9007 -0.6924 3.7207 9 1 6.5311 -1.1763 2.9892 10 6 6.4678 -0.0185 4.7815 11 7 7.7762 0.0355 4.9024 12 14 5.3775 0.8178 6.0470 13 1 5.0670 -0.1370 7.1411 14 1 6.0836 1.9985 6.6058 15 1 4.1149 1.2566 5.3999 16 6 4.1817 -2.8636 2.3817 17 8 3.9511 -3.4948 1.3684 18 7 4.5660 -3.5057 3.5027 19 6 4.5387 -2.8095 4.7915 20 6 4.9915 -4.8384 3.4355 21 6 5.2393 -5.5487 4.6025 22 6 5.6643 -6.8610 4.5341 23 6 5.8333 -7.4717 3.3028 24 9 6.2440 -8.7570 3.2379 25 6 5.5866 -6.7650 2.1378 26 6 5.1665 -5.4509 2.2019 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6053 -1.7198 1.2952 35 1 1.7516 -0.1583 2.1370 36 1 3.9994 0.1676 1.1421 37 1 3.8532 -1.3940 0.3004 38 1 4.0022 0.2558 3.4957 39 1 3.9754 -1.2396 4.4608 40 1 8.1751 0.5100 5.6485 41 1 5.3094 -2.0389 4.8046 42 1 3.5614 -2.3485 4.9347 43 1 4.7248 -3.5233 5.5940 44 1 5.1044 -5.0737 5.5631 45 1 5.8611 -7.4126 5.4415 46 1 5.7232 -7.2418 1.1783 47 1 4.9746 -4.9000 1.2930 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190621435.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:51:01 Heat of formation + Delta-G solvation = -6.815899 kcal Electronic energy + Delta-G solvation = -28269.734673 eV Core-core repulsion = 24369.010221 eV Total energy + Delta-G solvation = -3900.724453 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.77153 -42.20308 -39.73558 -37.93692 -37.44983 -35.90300 -34.61439 -32.12038 -31.62506 -30.16221 -29.49294 -27.98542 -27.34560 -24.95769 -24.60957 -23.83537 -22.72084 -20.95025 -20.71219 -19.23475 -18.77126 -18.48035 -17.86145 -17.19884 -16.80323 -16.54206 -16.47648 -16.04687 -15.87469 -15.63809 -15.38568 -15.01804 -14.67061 -14.65379 -14.45958 -14.24936 -14.01539 -13.97132 -13.60160 -13.56693 -13.40271 -13.14950 -12.97671 -12.73309 -12.57735 -12.20670 -12.13883 -12.05447 -11.81459 -11.72186 -11.55237 -11.45081 -11.14887 -11.09038 -10.65927 -10.53510 -10.06176 -9.48628 -8.57840 -8.31797 -6.34784 0.18978 0.30030 1.40801 1.43752 1.52626 1.59354 2.01038 2.33095 2.75431 2.79362 3.01269 3.37659 3.73694 3.92033 3.94123 3.97315 4.08011 4.14316 4.19315 4.31725 4.39231 4.50578 4.57234 4.58924 4.66373 4.70770 4.80553 4.82497 4.88677 4.93912 5.01487 5.05310 5.10045 5.15363 5.18545 5.19324 5.29825 5.31688 5.34419 5.47683 5.48986 5.52228 5.61521 5.69508 5.98314 6.10427 6.24285 6.64034 6.83151 7.21271 7.48131 8.83607 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.009133 B = 0.004886 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.216741 B = 5728.936837 C = 8152.884769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.117 4.117 5 C 0.131 3.869 6 N -0.604 5.604 7 C 0.166 3.834 8 C -0.526 4.526 9 H 0.021 0.979 10 C 0.027 3.973 11 N -0.935 5.935 12 Si 0.929 3.071 13 H -0.245 1.245 14 H -0.289 1.289 15 H -0.237 1.237 16 C 0.703 3.297 17 O -0.612 6.612 18 N -0.558 5.558 19 C 0.007 3.993 20 C 0.162 3.838 21 C -0.144 4.144 22 C -0.114 4.114 23 C 0.043 3.957 24 F -0.147 7.147 25 C -0.125 4.125 26 C -0.158 4.158 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.045 0.955 39 H 0.089 0.911 40 H 0.271 0.729 41 H 0.127 0.873 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.158 0.842 45 H 0.166 0.834 46 H 0.148 0.852 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.947 -3.513 -0.612 12.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 C -0.206 4.206 4 C -0.155 4.155 5 C 0.008 3.992 6 N -0.336 5.336 7 C 0.045 3.955 8 C -0.565 4.565 9 H 0.040 0.960 10 C -0.174 4.174 11 N -0.573 5.573 12 Si 0.750 3.250 13 H -0.169 1.169 14 H -0.215 1.215 15 H -0.160 1.160 16 C 0.407 3.593 17 O -0.495 6.495 18 N -0.280 5.280 19 C -0.132 4.132 20 C 0.066 3.934 21 C -0.165 4.165 22 C -0.133 4.133 23 C 0.023 3.977 24 F -0.126 7.126 25 C -0.144 4.144 26 C -0.179 4.179 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.106 0.894 40 H 0.080 0.920 41 H 0.144 0.856 42 H 0.102 0.898 43 H 0.108 0.892 44 H 0.176 0.824 45 H 0.183 0.817 46 H 0.166 0.834 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.956 -3.648 -1.032 12.542 hybrid contribution 0.547 0.305 0.320 0.703 sum -11.409 -3.342 -0.712 11.910 Atomic orbital electron populations 1.21785 0.94003 1.01674 1.02372 1.21036 0.96642 0.96436 0.96921 1.21897 1.00900 0.95401 1.02364 1.21928 0.94154 1.00246 0.99203 1.21502 0.94719 0.96727 0.86251 1.47216 1.66407 1.03534 1.16447 1.21209 0.94451 0.93490 0.86320 1.21264 0.91413 1.33930 1.09855 0.96041 1.25763 0.96081 0.95615 0.99914 1.70058 1.12159 1.42885 1.32190 0.85998 0.79969 0.79189 0.79801 1.16876 1.21507 1.15999 1.16023 0.77928 0.82623 0.82700 1.90601 1.59250 1.65961 1.33679 1.44409 1.64731 1.10228 1.08618 1.23793 1.05764 1.00565 0.83068 1.18158 0.96591 0.83456 0.95239 1.20930 1.03931 0.94178 0.97483 1.21119 1.00153 0.94698 0.97310 1.17737 1.05235 0.79682 0.95060 1.91443 1.88523 1.35318 1.97336 1.21175 1.00566 0.94206 0.98481 1.21893 1.01668 0.95376 0.98952 0.92377 0.91456 0.93151 0.91498 0.93189 0.91452 0.92395 0.93280 0.91499 0.89972 0.91930 0.93684 0.89423 0.92025 0.85646 0.89828 0.89191 0.82430 0.81657 0.83447 0.82883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.19 71.98 0.66 -1.97 16 2 C -0.09 -2.04 2.92 -10.79 -0.03 -2.07 16 3 C -0.15 -3.04 8.95 71.98 0.64 -2.40 16 4 C -0.12 -3.24 5.01 30.60 0.15 -3.09 16 5 C 0.13 4.47 5.13 86.38 0.44 4.91 16 6 N -0.60 -24.01 2.53 -844.20 -2.14 -26.15 16 7 C 0.17 6.66 3.86 85.63 0.33 6.99 16 8 C -0.53 -26.31 7.28 25.60 0.19 -26.12 16 9 H 0.02 1.29 8.06 -2.91 -0.02 1.27 16 10 C 0.03 1.33 5.02 84.66 0.42 1.76 16 11 N -0.93 -52.50 13.96 21.45 0.30 -52.20 16 12 Si 0.93 35.81 27.18 68.60 1.86 37.68 16 13 H -0.25 -8.54 7.11 99.48 0.71 -7.83 16 14 H -0.29 -11.57 7.11 99.48 0.71 -10.86 16 15 H -0.24 -8.17 6.54 99.48 0.65 -7.52 16 16 C 0.70 29.85 7.74 179.06 1.39 31.24 16 17 O -0.61 -27.60 12.64 -3.99 -0.05 -27.65 16 18 N -0.56 -21.84 3.06 -725.48 -2.22 -24.06 16 19 C 0.01 0.25 8.23 127.77 1.05 1.30 16 20 C 0.16 5.99 6.48 38.12 0.25 6.24 16 21 C -0.14 -4.31 9.32 22.39 0.21 -4.10 16 22 C -0.11 -3.04 10.02 22.30 0.22 -2.82 16 23 C 0.04 1.28 7.30 22.38 0.16 1.44 16 24 F -0.15 -4.21 17.26 44.97 0.78 -3.44 16 25 C -0.12 -3.95 10.02 22.30 0.22 -3.73 16 26 C -0.16 -5.91 8.91 22.38 0.20 -5.71 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 1.12 6.56 -2.38 -0.02 1.11 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.08 2.72 6.48 -2.39 -0.02 2.71 16 37 H 0.06 2.29 7.37 -2.39 -0.02 2.27 16 38 H 0.05 1.73 7.01 -2.38 -0.02 1.71 16 39 H 0.09 3.20 2.68 -22.75 -0.06 3.14 16 40 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 41 H 0.13 5.21 2.88 -2.39 -0.01 5.21 16 42 H 0.08 2.54 6.24 -2.38 -0.01 2.53 16 43 H 0.09 2.54 5.35 -2.38 -0.01 2.53 16 44 H 0.16 3.93 5.76 -2.91 -0.02 3.91 16 45 H 0.17 3.29 8.06 -2.91 -0.02 3.26 16 46 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 47 H 0.15 6.43 4.97 -18.83 -0.09 6.34 16 Total: -1.00 -62.57 365.68 5.85 -56.72 By element: Atomic # 1 Polarization: 36.42 SS G_CDS: 0.80 Total: 37.21 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: 6.52 Total: 1.88 kcal Atomic # 7 Polarization: -98.35 SS G_CDS: -4.06 Total: -102.41 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.05 Total: -27.65 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.78 Total: -3.44 kcal Atomic # 14 Polarization: 35.81 SS G_CDS: 1.86 Total: 37.68 kcal Total: -62.57 5.85 -56.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190621435.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.904 kcal (2) G-P(sol) polarization free energy of solvation -62.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds