Wall clock time and date at job start Sat Apr 11 2020 00:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46491 * 109.47272 * 2 1 4 4 C 1.46507 * 120.00128 * 269.99731 * 3 2 1 5 5 C 1.50696 * 109.47065 * 270.00128 * 4 3 2 6 6 H 1.07997 * 120.00283 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99567 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00273 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99772 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47396 * 60.00141 * 9 7 5 11 11 H 1.48509 * 109.46863 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46858 * 299.99879 * 9 7 5 13 13 C 1.34773 * 120.00307 * 89.99917 * 3 2 1 14 14 O 1.21281 * 120.00657 * 179.97438 * 13 3 2 15 15 C 1.50700 * 119.99763 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.47105 * 179.97438 * 15 13 3 17 17 C 1.46906 * 110.99716 * 179.97438 * 16 15 13 18 18 H 1.08996 * 109.46825 * 35.00670 * 17 16 15 19 19 C 1.52997 * 109.47302 * 274.99847 * 17 16 15 20 20 C 1.50708 * 109.46619 * 155.00022 * 17 16 15 21 21 N 1.31069 * 126.65994 * 44.69082 * 20 17 16 22 22 N 1.28846 * 107.98838 * 179.89604 * 21 20 17 23 23 N 1.28732 * 109.39566 * 0.37120 * 22 21 20 24 24 N 1.29021 * 108.81214 * 359.77318 * 23 22 21 25 25 C 1.46500 * 126.43866 * 179.97438 * 24 23 22 26 26 C 1.53002 * 117.49975 * 8.76998 * 25 24 23 27 27 C 1.52997 * 117.50143 * 300.10774 * 25 24 23 28 28 H 1.08998 * 109.46709 * 300.00074 * 1 2 3 29 29 H 1.09000 * 109.46528 * 59.99827 * 1 2 3 30 30 H 1.09002 * 109.46982 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46987 * 239.99672 * 2 1 3 32 32 H 1.09003 * 109.46867 * 120.00540 * 2 1 3 33 33 H 1.09000 * 109.46750 * 30.00296 * 4 3 2 34 34 H 1.08998 * 109.47061 * 149.99853 * 4 3 2 35 35 H 0.97001 * 120.00259 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.47653 * 59.99915 * 15 13 3 37 37 H 1.09007 * 109.47191 * 299.99768 * 15 13 3 38 38 H 1.00900 * 110.99849 * 56.04996 * 16 15 13 39 39 H 1.09002 * 109.47153 * 180.02562 * 19 17 16 40 40 H 1.09001 * 109.46832 * 60.00356 * 19 17 16 41 41 H 1.09004 * 109.47261 * 300.00337 * 19 17 16 42 42 H 1.09001 * 115.55061 * 154.43623 * 25 24 23 43 43 H 1.08993 * 117.49977 * 0.02562 * 26 25 24 44 44 H 1.09003 * 117.49959 * 145.01963 * 26 25 24 45 45 H 1.08997 * 117.50295 * 214.97972 * 27 25 24 46 46 H 1.08998 * 117.49677 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2627 2.0718 -1.2688 5 6 3.6859 1.8349 -1.7037 6 1 4.3430 1.2308 -1.0957 7 6 4.1492 2.3895 -2.8779 8 7 3.3493 3.1256 -3.6180 9 14 5.9133 2.0954 -3.4175 10 1 6.1403 0.6387 -3.5948 11 1 6.1608 2.7956 -4.7036 12 1 6.8411 2.6187 -2.3829 13 6 2.2431 2.0165 1.1671 14 8 2.6478 3.1598 1.1672 15 6 1.9924 1.3059 2.4722 16 7 2.3111 2.2058 3.5888 17 6 2.0776 1.5455 4.8802 18 1 2.3286 0.4880 4.7981 19 6 0.6050 1.6916 5.2688 20 6 2.9416 2.1865 5.9355 21 7 3.1277 3.4707 6.1207 22 7 3.9289 3.6167 7.1192 23 7 4.2647 2.4589 7.5708 24 7 3.6766 1.5513 6.8672 25 6 3.7882 0.1018 7.0480 26 6 4.5163 -0.4004 8.2964 27 6 5.1801 -0.5208 6.9223 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.5818 1.6877 -2.0284 34 1 2.0957 3.1410 -1.1384 35 1 3.6753 3.5161 -4.4439 36 1 2.6229 0.4187 2.5299 37 1 0.9445 1.0114 2.5302 38 1 1.7860 3.0648 3.5221 39 1 0.4319 1.2021 6.2272 40 1 -0.0199 1.2280 4.5055 41 1 0.3540 2.7492 5.3508 42 1 2.9410 -0.4832 6.6899 43 1 4.9119 0.3476 8.9834 44 1 4.1484 -1.3161 8.7594 45 1 5.2487 -1.5155 6.4820 46 1 6.0128 0.1481 6.7047 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191467325.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:51:16 Heat of formation + Delta-G solvation = 118.522187 kcal Electronic energy + Delta-G solvation = -27425.953776 eV Core-core repulsion = 23582.877103 eV Total energy + Delta-G solvation = -3843.076673 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.25160 -39.27259 -38.27942 -37.14789 -35.27179 -33.82706 -32.94186 -32.49318 -30.33361 -30.07723 -27.68445 -25.95392 -25.35694 -24.59878 -23.13479 -23.05256 -22.42857 -21.80961 -21.15147 -18.68198 -18.04198 -17.21588 -16.75772 -16.36821 -16.18513 -15.70208 -15.38321 -15.02431 -14.82998 -14.24113 -14.18033 -13.89235 -13.48528 -13.42266 -13.11797 -12.79987 -12.71061 -12.57233 -12.39504 -12.20503 -12.19571 -12.00857 -11.83120 -11.79132 -11.61576 -11.35904 -11.19565 -11.05256 -10.93545 -10.76000 -10.57656 -10.52406 -10.12342 -10.06929 -9.64523 -8.99464 -8.54104 -8.42020 -7.67425 -6.03212 -4.07842 1.05600 1.63964 2.21984 2.95446 3.32363 3.36200 3.37727 3.43657 3.47369 3.69163 3.82788 3.99897 4.11075 4.16409 4.35888 4.46622 4.58272 4.72274 4.95849 4.98343 5.02539 5.11669 5.13274 5.23527 5.31300 5.32498 5.35778 5.40194 5.44419 5.46761 5.58426 5.64252 5.70011 5.72609 5.94357 6.02761 6.17983 6.41059 6.62814 7.07472 7.22171 7.44885 7.54378 7.93192 8.24425 8.40819 8.56889 8.91171 9.09777 9.57303 11.04872 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.013824 B = 0.002958 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.021089 B = 9463.579959 C =10044.748943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.598 5.598 4 C 0.248 3.752 5 C -0.527 4.527 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.503 3.497 14 O -0.522 6.522 15 C 0.042 3.958 16 N -0.658 5.658 17 C 0.171 3.829 18 H 0.102 0.898 19 C -0.181 4.181 20 C 0.208 3.792 21 N -0.283 5.283 22 N -0.076 5.076 23 N -0.103 5.103 24 N -0.281 5.281 25 C 0.047 3.953 26 C -0.155 4.155 27 C -0.162 4.162 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.032 0.968 34 H 0.043 0.957 35 H 0.264 0.736 36 H 0.096 0.904 37 H 0.058 0.942 38 H 0.366 0.634 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.159 0.841 43 H 0.116 0.884 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.270 -14.702 21.051 26.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.074 0.926 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.288 3.712 14 O -0.398 6.398 15 C -0.090 4.090 16 N -0.292 5.292 17 C 0.056 3.944 18 H 0.120 0.880 19 C -0.241 4.241 20 C -0.071 4.071 21 N -0.132 5.132 22 N -0.070 5.070 23 N -0.088 5.088 24 N -0.082 5.082 25 C -0.057 4.057 26 C -0.192 4.192 27 C -0.200 4.200 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.114 0.886 37 H 0.076 0.924 38 H 0.188 0.812 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.176 0.824 43 H 0.134 0.866 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.817 -12.923 21.485 25.531 hybrid contribution -0.216 -1.086 -0.783 1.356 sum -5.033 -14.009 20.702 25.498 Atomic orbital electron populations 1.22231 0.96863 1.01344 1.02309 1.21402 0.93406 0.84369 1.02609 1.48248 1.64043 1.13192 1.07665 1.19251 0.96214 0.93641 0.77983 1.21394 0.96953 1.32018 1.06193 0.92554 1.24924 0.97799 0.94904 0.96414 1.69915 1.35733 1.33378 1.14384 0.86573 0.84910 0.78176 0.77851 1.20294 1.21173 1.20153 1.20061 0.79188 0.87194 0.84737 1.90718 1.44421 1.17869 1.86767 1.21973 1.00219 0.96440 0.90349 1.59870 1.63724 1.07385 0.98211 1.19813 0.91071 0.97191 0.86296 0.88042 1.22537 0.94736 1.04250 1.02589 1.25933 0.97525 0.89139 0.94512 1.75051 1.13903 1.13095 1.11106 1.78652 1.09307 1.13641 1.05373 1.78780 1.17880 0.93574 1.18577 1.47812 1.30338 1.08427 1.21627 1.22323 1.00239 0.74593 1.08506 1.23449 1.01024 1.03625 0.91143 1.23558 0.93739 1.03067 0.99681 0.93226 0.91958 0.92210 0.89906 0.91953 0.95049 0.93899 0.92665 0.88577 0.92377 0.81171 0.91689 0.90513 0.90681 0.82397 0.86568 0.86382 0.86137 0.87329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 10.24 37.16 0.38 -1.62 16 2 C 0.11 1.55 5.93 -4.04 -0.02 1.52 16 3 N -0.60 -12.00 2.46 -175.06 -0.43 -12.43 16 4 C 0.25 6.37 5.16 -5.19 -0.03 6.35 16 5 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -26.66 13.29 55.43 0.74 -25.93 16 9 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.50 9.97 7.71 -10.99 -0.08 9.88 16 14 O -0.52 -13.10 15.78 5.56 0.09 -13.01 16 15 C 0.04 0.55 4.52 -4.97 -0.02 0.53 16 16 N -0.66 -9.00 5.86 -109.21 -0.64 -9.64 16 17 C 0.17 1.65 2.96 -68.86 -0.20 1.45 16 18 H 0.10 0.69 6.88 -51.93 -0.36 0.33 16 19 C -0.18 -1.35 9.14 37.16 0.34 -1.01 16 20 C 0.21 2.61 6.97 -155.43 -1.08 1.53 16 21 N -0.28 -4.57 12.36 32.70 0.40 -4.17 16 22 N -0.08 -1.26 13.43 60.35 0.81 -0.45 16 23 N -0.10 -1.43 12.69 60.35 0.77 -0.66 16 24 N -0.28 -3.11 3.67 -51.81 -0.19 -3.30 16 25 C 0.05 0.29 6.43 -67.93 -0.44 -0.15 16 26 C -0.15 -0.72 10.16 -26.69 -0.27 -0.99 16 27 C -0.16 -0.86 10.46 -26.69 -0.28 -1.14 16 28 H 0.05 0.54 7.22 -51.93 -0.38 0.16 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 32 H 0.06 0.71 6.44 -51.93 -0.33 0.37 16 33 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 36 H 0.10 1.09 7.32 -51.93 -0.38 0.71 16 37 H 0.06 0.58 6.48 -51.93 -0.34 0.25 16 38 H 0.37 5.45 8.17 -39.29 -0.32 5.13 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.47 7.45 -51.93 -0.39 0.08 16 41 H 0.07 0.67 8.13 -51.93 -0.42 0.24 16 42 H 0.16 0.45 7.60 -51.93 -0.39 0.06 16 43 H 0.12 0.72 7.85 -51.93 -0.41 0.31 16 44 H 0.12 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.12 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 386.99 15.07 5.83 5.83 Total: -1.00 -37.54 386.99 -6.80 -44.34 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.02 Total: -0.40 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -2.13 Total: 2.81 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: 1.46 Total: -56.57 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.09 Total: -13.01 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.54 -6.80 -44.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191467325.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.863 kcal (2) G-P(sol) polarization free energy of solvation -37.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds