Wall clock time and date at job start Sat Apr 11 2020 00:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47462 * 2 1 4 4 N 1.46903 * 109.47458 * 120.00511 * 2 1 3 5 5 C 1.46898 * 110.99673 * 274.99797 * 4 2 1 6 6 C 1.53006 * 109.47006 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.47184 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00025 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00035 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99801 * 0.02562 * 9 7 6 11 11 C 1.46496 * 119.99846 * 180.02562 * 9 7 6 12 12 C 1.50700 * 109.47212 * 90.00427 * 11 9 7 13 13 H 1.07999 * 119.99752 * 359.97438 * 12 11 9 14 14 C 1.37882 * 120.00202 * 179.97438 * 12 11 9 15 15 N 1.31516 * 119.99568 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99968 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47457 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46847 * 120.00225 * 16 14 12 19 19 H 1.48499 * 109.47516 * 240.00124 * 16 14 12 20 20 C 1.50708 * 109.46876 * 240.00210 * 2 1 3 21 21 N 1.31071 * 126.65760 * 284.69135 * 20 2 1 22 22 N 1.28846 * 107.98758 * 179.89810 * 21 20 2 23 23 N 1.28735 * 109.39634 * 0.37027 * 22 21 20 24 24 N 1.29023 * 108.80971 * 359.76963 * 23 22 21 25 25 C 1.46494 * 126.43559 * 179.97438 * 24 23 22 26 26 C 1.52999 * 117.50117 * 8.77446 * 25 24 23 27 27 C 1.53006 * 117.50255 * 300.11160 * 25 24 23 28 28 H 1.08994 * 109.47006 * 59.99645 * 1 2 3 29 29 H 1.08998 * 109.47007 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46579 * 299.99779 * 1 2 3 31 31 H 1.00895 * 111.00497 * 151.03719 * 4 2 1 32 32 H 1.09001 * 109.47062 * 59.99745 * 5 4 2 33 33 H 1.08993 * 109.47084 * 299.99192 * 5 4 2 34 34 H 1.09001 * 109.46801 * 300.00064 * 6 5 4 35 35 H 1.09001 * 109.46998 * 59.99660 * 6 5 4 36 36 H 1.08996 * 109.47300 * 89.99776 * 10 9 7 37 37 H 1.09010 * 109.46976 * 209.99920 * 10 9 7 38 38 H 1.09007 * 109.47283 * 329.99472 * 10 9 7 39 39 H 1.09004 * 109.46870 * 210.00004 * 11 9 7 40 40 H 1.08996 * 109.47490 * 330.00312 * 11 9 7 41 41 H 0.97001 * 119.99819 * 179.97438 * 15 14 12 42 42 H 1.09004 * 115.55151 * 154.44506 * 25 24 23 43 43 H 1.08998 * 117.49894 * 0.02562 * 26 25 24 44 44 H 1.09006 * 117.50038 * 145.01980 * 26 25 24 45 45 H 1.08995 * 117.50188 * 214.98199 * 27 25 24 46 46 H 1.09000 * 117.49413 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0198 -0.6926 1.1994 5 6 2.0826 0.2224 2.3468 6 6 2.5953 -0.5334 3.5744 7 6 2.6604 0.4054 4.7514 8 8 2.3289 1.5648 4.6214 9 7 3.0860 -0.0435 5.9488 10 6 3.4858 -1.4441 6.1060 11 6 3.1487 0.8690 7.0931 12 6 1.8354 0.8396 7.8317 13 1 1.0340 0.2049 7.4832 14 6 1.6569 1.6229 8.9522 15 7 2.6329 2.3954 9.3768 16 14 0.0288 1.5869 9.8672 17 1 -0.8977 0.6429 9.1922 18 1 0.2566 1.1415 11.2654 19 1 -0.5667 2.9473 9.8719 20 6 2.0323 -0.7104 -1.2306 21 7 2.0417 -2.0046 -1.4380 22 7 2.5452 -2.2169 -2.6049 23 7 2.8643 -1.0922 -3.1439 24 7 2.5636 -0.1394 -2.3275 25 6 2.7635 1.2943 -2.5521 26 6 3.1951 1.7368 -3.9517 27 6 4.1947 1.7790 -2.7930 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 2.9173 -1.1207 1.0286 32 1 1.0872 0.6162 2.5525 33 1 2.7591 1.0459 2.1182 34 1 1.9185 -1.3568 3.8029 35 1 3.5906 -0.9275 3.3689 36 1 4.5504 -1.5439 5.8946 37 1 3.2865 -1.7663 7.1281 38 1 2.9179 -2.0642 5.4123 39 1 3.9495 0.5567 7.7634 40 1 3.3444 1.8815 6.7401 41 1 2.5073 2.9467 10.1649 42 1 2.0950 1.9545 -1.9994 43 1 3.3299 0.9611 -4.7055 44 1 2.8108 2.6882 -4.3196 45 1 4.4675 2.7580 -2.3992 46 1 4.9875 1.0310 -2.7840 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191481762.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:51:25 Heat of formation + Delta-G solvation = 114.359823 kcal Electronic energy + Delta-G solvation = -26745.489335 eV Core-core repulsion = 22902.232168 eV Total energy + Delta-G solvation = -3843.257166 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -44.50842 -39.13709 -38.43825 -37.49037 -34.85637 -34.04640 -33.45921 -32.60268 -31.13458 -29.11127 -27.56579 -25.88780 -25.65128 -24.95666 -23.59775 -23.20928 -22.22733 -21.57623 -21.12229 -18.50624 -18.22972 -17.34488 -16.77973 -16.52562 -16.38661 -15.87054 -15.60359 -15.25725 -14.93777 -14.32616 -14.11865 -14.03319 -13.66211 -13.42874 -12.98813 -12.74552 -12.61785 -12.47719 -12.33711 -12.30587 -12.20121 -12.11247 -11.89262 -11.82097 -11.57802 -11.48812 -11.27982 -11.17020 -11.02963 -10.85302 -10.77617 -10.59051 -10.27572 -10.17234 -9.62260 -8.94262 -8.77378 -8.45515 -7.66160 -6.06099 -4.10685 0.81215 1.42914 1.95405 2.81638 3.28732 3.34505 3.36510 3.39047 3.43716 3.50997 3.65892 3.89203 3.99938 4.06117 4.32632 4.44611 4.59529 4.76092 4.85764 4.91334 5.03967 5.05080 5.15283 5.19034 5.26000 5.30438 5.31320 5.38683 5.40437 5.51104 5.60384 5.72470 5.80083 5.91155 5.96019 5.99058 6.05551 6.23333 6.65128 7.00110 7.04965 7.41681 7.52241 7.90509 8.21779 8.32271 8.39818 8.88538 9.06707 9.54553 11.02051 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.021281 B = 0.002215 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.404510 B =12636.717162 C =12809.589881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.175 3.825 3 H 0.070 0.930 4 N -0.671 5.671 5 C 0.075 3.925 6 C -0.137 4.137 7 C 0.506 3.494 8 O -0.547 6.547 9 N -0.602 5.602 10 C 0.082 3.918 11 C 0.244 3.756 12 C -0.524 4.524 13 H 0.058 0.942 14 C 0.060 3.940 15 N -0.896 5.896 16 Si 0.898 3.102 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.184 3.816 21 N -0.278 5.278 22 N -0.077 5.077 23 N -0.099 5.099 24 N -0.278 5.278 25 C 0.042 3.958 26 C -0.152 4.152 27 C -0.162 4.162 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.345 0.655 32 H 0.088 0.912 33 H 0.041 0.959 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.043 0.957 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.032 0.968 40 H 0.043 0.957 41 H 0.263 0.737 42 H 0.162 0.838 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.926 -2.327 -24.312 24.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.061 3.939 3 H 0.087 0.913 4 N -0.304 5.304 5 C -0.054 4.054 6 C -0.178 4.178 7 C 0.292 3.708 8 O -0.425 6.425 9 N -0.334 5.334 10 C -0.062 4.062 11 C 0.125 3.875 12 C -0.563 4.563 13 H 0.076 0.924 14 C -0.142 4.142 15 N -0.535 5.535 16 Si 0.726 3.274 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.094 4.094 21 N -0.127 5.127 22 N -0.071 5.071 23 N -0.084 5.084 24 N -0.079 5.079 25 C -0.061 4.061 26 C -0.190 4.190 27 C -0.201 4.201 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.164 0.836 32 H 0.106 0.894 33 H 0.059 0.941 34 H 0.117 0.883 35 H 0.102 0.898 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.050 0.950 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.179 0.821 43 H 0.135 0.865 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.459 -3.042 -24.811 25.039 hybrid contribution -0.151 1.259 0.855 1.530 sum 1.308 -1.783 -23.956 24.058 Atomic orbital electron populations 1.21849 0.91419 1.04186 1.02410 1.19979 0.97338 0.94069 0.82472 0.91259 1.60533 1.34171 1.32961 1.02721 1.21792 1.02560 0.92766 0.88294 1.21595 1.02969 0.99586 0.93629 1.20225 0.78145 0.88493 0.83976 1.90660 1.48833 1.18776 1.84273 1.48158 1.63481 1.10876 1.10893 1.21658 0.98582 0.82928 1.03003 1.19295 0.97166 0.89381 0.81681 1.21472 0.99290 1.25156 1.10412 0.92381 1.24950 0.96975 0.95087 0.97210 1.69945 1.31932 1.26813 1.24783 0.86436 0.83644 0.77962 0.79349 1.19756 1.20967 1.20885 1.26185 0.99759 0.90412 0.93029 1.75118 1.16941 1.11171 1.09472 1.78691 1.11646 1.15108 1.01624 1.78823 1.19229 0.92245 1.18069 1.47918 1.39563 1.08664 1.11757 1.22437 1.02689 0.75403 1.05560 1.23463 1.00868 1.04251 0.90410 1.23576 0.91047 1.04103 1.01327 0.92497 0.90463 0.90261 0.83570 0.89406 0.94069 0.88270 0.89830 0.93806 0.90780 0.92164 0.95039 0.93888 0.92782 0.82113 0.86494 0.86183 0.85977 0.87405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.40 37.16 0.35 -0.85 16 2 C 0.17 1.57 2.99 -68.86 -0.21 1.36 16 3 H 0.07 0.51 6.88 -51.93 -0.36 0.15 16 4 N -0.67 -7.02 6.30 -107.94 -0.68 -7.70 16 5 C 0.07 0.91 4.77 -3.82 -0.02 0.90 16 6 C -0.14 -1.87 4.51 -27.88 -0.13 -1.99 16 7 C 0.51 9.98 7.67 -10.99 -0.08 9.90 16 8 O -0.55 -13.05 15.56 5.56 0.09 -12.97 16 9 N -0.60 -12.49 2.86 -182.96 -0.52 -13.02 16 10 C 0.08 1.28 10.24 59.85 0.61 1.89 16 11 C 0.24 6.33 5.16 -5.20 -0.03 6.30 16 12 C -0.52 -14.77 9.39 -34.44 -0.32 -15.10 16 13 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 16 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 C 0.18 1.93 6.62 -155.43 -1.03 0.90 16 21 N -0.28 -3.69 12.36 32.70 0.40 -3.29 16 22 N -0.08 -1.07 13.43 60.35 0.81 -0.26 16 23 N -0.10 -1.16 12.69 60.35 0.77 -0.39 16 24 N -0.28 -2.58 3.67 -51.80 -0.19 -2.77 16 25 C 0.04 0.23 6.43 -67.93 -0.44 -0.21 16 26 C -0.15 -0.58 10.16 -26.69 -0.27 -0.86 16 27 C -0.16 -0.67 10.46 -26.69 -0.28 -0.95 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.68 7.45 -51.93 -0.39 0.30 16 31 H 0.35 3.55 8.35 -39.29 -0.33 3.22 16 32 H 0.09 1.18 7.39 -51.93 -0.38 0.80 16 33 H 0.04 0.52 8.01 -51.93 -0.42 0.10 16 34 H 0.10 1.28 7.40 -51.93 -0.38 0.89 16 35 H 0.08 0.96 8.11 -51.93 -0.42 0.54 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 1.19 8.07 -51.92 -0.42 0.78 16 38 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 39 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 40 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.16 0.48 7.60 -51.93 -0.39 0.09 16 43 H 0.12 0.60 7.85 -51.93 -0.41 0.19 16 44 H 0.12 0.20 8.14 -51.93 -0.42 -0.23 16 45 H 0.12 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 388.30 15.07 5.85 5.85 Total: -1.00 -35.48 388.30 -6.81 -42.30 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -7.12 Total: -1.62 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -1.94 Total: 2.89 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: 1.32 Total: -53.16 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.09 Total: -12.97 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.48 -6.81 -42.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191481762.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.655 kcal (2) G-P(sol) polarization free energy of solvation -35.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds