Wall clock time and date at job start Sat Apr 11 2020 00:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47462 * 2 1 4 4 N 1.46903 * 109.47458 * 120.00511 * 2 1 3 5 5 C 1.46898 * 110.99673 * 274.99797 * 4 2 1 6 6 C 1.53006 * 109.47006 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.47184 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00025 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00035 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99801 * 0.02562 * 9 7 6 11 11 C 1.46496 * 119.99846 * 180.02562 * 9 7 6 12 12 C 1.50700 * 109.47212 * 90.00427 * 11 9 7 13 13 H 1.07999 * 119.99752 * 359.97438 * 12 11 9 14 14 C 1.37882 * 120.00202 * 179.97438 * 12 11 9 15 15 N 1.31516 * 119.99568 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99968 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47457 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46847 * 120.00225 * 16 14 12 19 19 H 1.48499 * 109.47516 * 240.00124 * 16 14 12 20 20 C 1.50708 * 109.46876 * 240.00210 * 2 1 3 21 21 N 1.31071 * 126.65760 * 284.69135 * 20 2 1 22 22 N 1.28846 * 107.98758 * 179.89810 * 21 20 2 23 23 N 1.28735 * 109.39634 * 0.37027 * 22 21 20 24 24 N 1.29023 * 108.80971 * 359.76963 * 23 22 21 25 25 C 1.46494 * 126.43559 * 179.97438 * 24 23 22 26 26 C 1.52999 * 117.50117 * 8.77446 * 25 24 23 27 27 C 1.53006 * 117.50255 * 300.11160 * 25 24 23 28 28 H 1.08994 * 109.47006 * 59.99645 * 1 2 3 29 29 H 1.08998 * 109.47007 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46579 * 299.99779 * 1 2 3 31 31 H 1.00895 * 111.00497 * 151.03719 * 4 2 1 32 32 H 1.09001 * 109.47062 * 59.99745 * 5 4 2 33 33 H 1.08993 * 109.47084 * 299.99192 * 5 4 2 34 34 H 1.09001 * 109.46801 * 300.00064 * 6 5 4 35 35 H 1.09001 * 109.46998 * 59.99660 * 6 5 4 36 36 H 1.08996 * 109.47300 * 89.99776 * 10 9 7 37 37 H 1.09010 * 109.46976 * 209.99920 * 10 9 7 38 38 H 1.09007 * 109.47283 * 329.99472 * 10 9 7 39 39 H 1.09004 * 109.46870 * 210.00004 * 11 9 7 40 40 H 1.08996 * 109.47490 * 330.00312 * 11 9 7 41 41 H 0.97001 * 119.99819 * 179.97438 * 15 14 12 42 42 H 1.09004 * 115.55151 * 154.44506 * 25 24 23 43 43 H 1.08998 * 117.49894 * 0.02562 * 26 25 24 44 44 H 1.09006 * 117.50038 * 145.01980 * 26 25 24 45 45 H 1.08995 * 117.50188 * 214.98199 * 27 25 24 46 46 H 1.09000 * 117.49413 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0198 -0.6926 1.1994 5 6 2.0826 0.2224 2.3468 6 6 2.5953 -0.5334 3.5744 7 6 2.6604 0.4054 4.7514 8 8 2.3289 1.5648 4.6214 9 7 3.0860 -0.0435 5.9488 10 6 3.4858 -1.4441 6.1060 11 6 3.1487 0.8690 7.0931 12 6 1.8354 0.8396 7.8317 13 1 1.0340 0.2049 7.4832 14 6 1.6569 1.6229 8.9522 15 7 2.6329 2.3954 9.3768 16 14 0.0288 1.5869 9.8672 17 1 -0.8977 0.6429 9.1922 18 1 0.2566 1.1415 11.2654 19 1 -0.5667 2.9473 9.8719 20 6 2.0323 -0.7104 -1.2306 21 7 2.0417 -2.0046 -1.4380 22 7 2.5452 -2.2169 -2.6049 23 7 2.8643 -1.0922 -3.1439 24 7 2.5636 -0.1394 -2.3275 25 6 2.7635 1.2943 -2.5521 26 6 3.1951 1.7368 -3.9517 27 6 4.1947 1.7790 -2.7930 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 2.9173 -1.1207 1.0286 32 1 1.0872 0.6162 2.5525 33 1 2.7591 1.0459 2.1182 34 1 1.9185 -1.3568 3.8029 35 1 3.5906 -0.9275 3.3689 36 1 4.5504 -1.5439 5.8946 37 1 3.2865 -1.7663 7.1281 38 1 2.9179 -2.0642 5.4123 39 1 3.9495 0.5567 7.7634 40 1 3.3444 1.8815 6.7401 41 1 2.5073 2.9467 10.1649 42 1 2.0950 1.9545 -1.9994 43 1 3.3299 0.9611 -4.7055 44 1 2.8108 2.6882 -4.3196 45 1 4.4675 2.7580 -2.3992 46 1 4.9875 1.0310 -2.7840 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191481762.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:51:22 Heat of formation + Delta-G solvation = 88.338343 kcal Electronic energy + Delta-G solvation = -26746.617711 eV Core-core repulsion = 22902.232168 eV Total energy + Delta-G solvation = -3844.385542 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.33451 -40.66516 -38.90696 -38.37842 -36.56380 -34.79591 -34.73958 -34.32001 -32.10789 -30.35993 -29.12193 -27.26909 -26.46924 -25.91062 -25.06643 -23.62505 -23.33621 -22.49042 -21.85056 -19.93833 -18.87380 -18.68822 -18.15559 -17.80675 -17.63965 -17.03253 -16.65743 -16.29340 -16.07110 -15.87882 -15.38483 -14.71569 -14.54184 -14.42357 -14.11656 -14.02331 -13.73267 -13.62339 -13.42271 -13.42066 -13.20816 -13.16078 -12.94607 -12.78027 -12.71813 -12.66566 -12.62596 -12.36659 -12.25154 -12.19393 -11.95382 -11.74314 -11.65685 -11.48820 -10.95806 -10.64036 -10.57463 -9.60315 -9.38786 -8.21595 -6.36199 0.03724 0.80913 1.05376 1.37892 1.39558 1.51825 1.87743 2.28610 2.41244 2.47192 2.70464 2.90431 3.07973 3.18573 3.49650 3.63361 3.68522 3.85812 3.94658 4.03666 4.11577 4.23318 4.26809 4.42234 4.44995 4.60929 4.64072 4.67242 4.69082 4.74158 4.83493 4.88593 4.93993 4.98717 5.02500 5.02915 5.09988 5.17450 5.24729 5.28622 5.58063 5.79217 5.85756 6.07499 6.19351 6.71520 6.82489 7.29754 7.45871 7.51062 8.85539 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.021281 B = 0.002215 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.404510 B =12636.717162 C =12809.589881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.177 3.823 3 H 0.094 0.906 4 N -0.671 5.671 5 C 0.085 3.915 6 C -0.121 4.121 7 C 0.496 3.504 8 O -0.597 6.597 9 N -0.612 5.612 10 C 0.078 3.922 11 C 0.258 3.742 12 C -0.540 4.540 13 H 0.053 0.947 14 C 0.006 3.994 15 N -0.929 5.929 16 Si 0.968 3.032 17 H -0.267 1.267 18 H -0.271 1.271 19 H -0.281 1.281 20 C 0.188 3.812 21 N -0.306 5.306 22 N -0.110 5.110 23 N -0.105 5.105 24 N -0.267 5.267 25 C 0.018 3.982 26 C -0.143 4.143 27 C -0.156 4.156 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.349 0.651 32 H 0.074 0.926 33 H 0.038 0.962 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.095 0.905 39 H 0.021 0.979 40 H -0.001 1.001 41 H 0.267 0.733 42 H 0.189 0.811 43 H 0.101 0.899 44 H 0.148 0.852 45 H 0.146 0.854 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.270 -2.387 -25.119 25.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.064 3.936 3 H 0.111 0.889 4 N -0.304 5.304 5 C -0.044 4.044 6 C -0.161 4.161 7 C 0.285 3.715 8 O -0.479 6.479 9 N -0.344 5.344 10 C -0.064 4.064 11 C 0.136 3.864 12 C -0.578 4.578 13 H 0.071 0.929 14 C -0.193 4.193 15 N -0.569 5.569 16 Si 0.792 3.208 17 H -0.191 1.191 18 H -0.196 1.196 19 H -0.207 1.207 20 C -0.090 4.090 21 N -0.155 5.155 22 N -0.104 5.104 23 N -0.090 5.090 24 N -0.068 5.068 25 C -0.084 4.084 26 C -0.181 4.181 27 C -0.194 4.194 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.168 0.832 32 H 0.093 0.907 33 H 0.056 0.944 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.114 0.886 39 H 0.039 0.961 40 H 0.018 0.982 41 H 0.076 0.924 42 H 0.206 0.794 43 H 0.119 0.881 44 H 0.166 0.834 45 H 0.164 0.836 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.822 -3.145 -25.645 25.850 hybrid contribution 0.123 1.342 1.045 1.705 sum 0.945 -1.803 -24.600 24.684 Atomic orbital electron populations 1.21835 0.91069 1.03410 1.03306 1.20094 0.97499 0.94826 0.81175 0.88858 1.60469 1.34410 1.32686 1.02847 1.21584 1.01628 0.92725 0.88443 1.21523 1.05208 0.98258 0.91089 1.21292 0.76504 0.88761 0.84901 1.90628 1.50810 1.21343 1.85145 1.48200 1.63847 1.12336 1.09974 1.21934 1.00790 0.80178 1.03530 1.18755 0.96047 0.88559 0.83047 1.21733 0.99941 1.25238 1.10923 0.92864 1.25868 1.00701 0.94564 0.98149 1.70058 1.34020 1.27467 1.25380 0.85364 0.79043 0.78008 0.78378 1.19081 1.19589 1.20657 1.26291 0.99408 0.89814 0.93530 1.75022 1.17844 1.12967 1.09679 1.78658 1.13169 1.16230 1.02304 1.78740 1.19247 0.92456 1.18567 1.48195 1.38037 1.09748 1.10851 1.23106 1.04348 0.73498 1.07424 1.23563 1.00244 1.04859 0.89419 1.23648 0.89867 1.04571 1.01345 0.90714 0.92070 0.90252 0.83221 0.90738 0.94356 0.86710 0.86812 0.91194 0.91816 0.88643 0.96071 0.98247 0.92425 0.79367 0.88078 0.83390 0.83622 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.40 71.98 0.68 -1.44 16 2 C 0.18 2.82 2.99 44.17 0.13 2.95 16 3 H 0.09 1.08 6.88 -2.39 -0.02 1.07 16 4 N -0.67 -12.63 6.30 -495.43 -3.12 -15.75 16 5 C 0.09 1.93 4.77 86.31 0.41 2.35 16 6 C -0.12 -3.00 4.51 29.85 0.13 -2.86 16 7 C 0.50 19.36 7.67 87.66 0.67 20.03 16 8 O -0.60 -29.09 15.56 -3.04 -0.05 -29.14 16 9 N -0.61 -25.25 2.86 -851.13 -2.43 -27.69 16 10 C 0.08 2.25 10.24 127.77 1.31 3.56 16 11 C 0.26 13.77 5.16 85.63 0.44 14.21 16 12 C -0.54 -30.90 9.39 25.60 0.24 -30.66 16 13 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 14 C 0.01 0.34 5.46 84.66 0.46 0.80 16 15 N -0.93 -55.90 13.29 21.45 0.28 -55.61 16 16 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 C 0.19 3.68 6.62 138.14 0.91 4.59 16 21 N -0.31 -7.99 12.36 -50.45 -0.62 -8.62 16 22 N -0.11 -3.07 13.43 37.01 0.50 -2.58 16 23 N -0.10 -2.42 12.69 37.02 0.47 -1.95 16 24 N -0.27 -4.59 3.67 -317.81 -1.17 -5.76 16 25 C 0.02 0.15 6.43 44.99 0.29 0.43 16 26 C -0.14 -0.77 10.16 30.62 0.31 -0.46 16 27 C -0.16 -0.93 10.46 30.62 0.32 -0.61 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.08 1.24 7.45 -2.39 -0.02 1.22 16 31 H 0.35 6.37 8.35 -89.70 -0.75 5.62 16 32 H 0.07 1.92 7.39 -2.39 -0.02 1.90 16 33 H 0.04 0.90 8.01 -2.39 -0.02 0.88 16 34 H 0.11 2.57 7.40 -2.39 -0.02 2.55 16 35 H 0.11 2.19 8.11 -2.39 -0.02 2.17 16 36 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.06 1.98 8.07 -2.38 -0.02 1.96 16 38 H 0.10 2.08 6.44 -2.38 -0.02 2.07 16 39 H 0.02 1.16 8.07 -2.38 -0.02 1.14 16 40 H 0.00 -0.04 7.42 -2.39 -0.02 -0.05 16 41 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 42 H 0.19 0.44 7.60 -2.38 -0.02 0.43 16 43 H 0.10 0.92 7.85 -2.39 -0.02 0.90 16 44 H 0.15 -0.03 8.14 -2.38 -0.02 -0.05 16 45 H 0.15 0.19 8.14 -2.39 -0.02 0.17 16 46 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -80.74 388.30 2.45 -78.29 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 0.25 Total: 9.28 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 6.32 Total: 12.89 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -6.09 Total: -117.95 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.05 Total: -29.14 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -80.74 2.45 -78.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191481762.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.632 kcal (2) G-P(sol) polarization free energy of solvation -80.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds