Wall clock time and date at job start Sat Apr 11 2020 00:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46913 * 2 1 4 4 N 1.46501 * 109.46570 * 119.99607 * 2 1 3 5 5 C 1.46502 * 119.99619 * 122.24511 * 4 2 1 6 6 C 1.50703 * 109.47227 * 274.90802 * 5 4 2 7 7 C 1.38242 * 119.97045 * 264.81436 * 6 5 4 8 8 C 1.38203 * 120.01897 * 179.72286 * 7 6 5 9 9 C 1.38457 * 119.97674 * 0.57372 * 8 7 6 10 10 F 1.35093 * 120.02539 * 179.68217 * 9 8 7 11 11 C 1.38456 * 119.94569 * 359.69541 * 9 8 7 12 12 C 1.38201 * 119.97845 * 0.02562 * 11 9 8 13 13 C 1.34779 * 120.00331 * 302.24088 * 4 2 1 14 14 O 1.21587 * 119.99844 * 174.81560 * 13 4 2 15 15 N 1.34771 * 120.00056 * 354.81559 * 13 4 2 16 16 C 1.46494 * 120.00471 * 185.31491 * 15 13 4 17 17 C 1.52994 * 109.47721 * 180.02562 * 16 15 13 18 18 C 1.53001 * 109.47435 * 180.02562 * 17 16 15 19 19 C 1.50696 * 109.47164 * 179.97438 * 18 17 16 20 20 H 1.08005 * 120.00194 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00194 * 179.97438 * 19 18 17 22 22 N 1.31521 * 119.99785 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00269 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47377 * 60.00191 * 23 21 19 25 25 H 1.48503 * 109.47180 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46761 * 299.99777 * 23 21 19 27 27 H 1.09003 * 109.47239 * 305.08642 * 1 2 3 28 28 H 1.09002 * 109.46738 * 65.08985 * 1 2 3 29 29 H 1.08996 * 109.47061 * 185.08198 * 1 2 3 30 30 H 1.09000 * 109.47284 * 239.99649 * 2 1 3 31 31 H 1.08996 * 109.46939 * 186.28843 * 3 2 1 32 32 H 1.09000 * 109.46985 * 306.28672 * 3 2 1 33 33 H 1.09007 * 109.47339 * 66.28905 * 3 2 1 34 34 H 1.09003 * 109.47173 * 154.90851 * 5 4 2 35 35 H 1.08999 * 109.47471 * 34.91149 * 5 4 2 36 36 H 1.07994 * 119.99349 * 359.97438 * 7 6 5 37 37 H 1.08000 * 120.00970 * 180.25324 * 8 7 6 38 38 H 1.08007 * 120.01112 * 179.97438 * 11 9 8 39 39 H 1.08002 * 119.98797 * 179.97438 * 12 11 9 40 40 H 0.97004 * 119.99794 * 5.31988 * 15 13 4 41 41 H 1.09003 * 109.46913 * 300.00329 * 16 15 13 42 42 H 1.09004 * 109.47227 * 59.99799 * 16 15 13 43 43 H 1.09003 * 109.46990 * 300.00030 * 17 16 15 44 44 H 1.08998 * 109.47356 * 59.99852 * 17 16 15 45 45 H 1.09003 * 109.46971 * 299.99938 * 18 17 16 46 46 H 1.09000 * 109.46918 * 60.00082 * 18 17 16 47 47 H 0.97001 * 119.99848 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.9006 -1.8524 1.0625 6 6 2.0698 -3.0939 0.8635 7 6 1.7421 -3.8866 1.9476 8 6 0.9754 -5.0222 1.7671 9 6 0.5456 -5.3723 0.4984 10 9 -0.1985 -6.4857 0.3199 11 6 0.8792 -4.5805 -0.5874 12 6 1.6411 -3.4422 -0.4037 13 6 1.6558 -0.2570 2.4198 14 8 1.9828 -0.8844 3.4087 15 7 0.9309 0.8720 2.5473 16 6 0.6359 1.4067 3.8789 17 6 -0.1956 2.6838 3.7430 18 6 -0.5031 3.2426 5.1338 19 6 -1.3215 4.5008 4.9999 20 1 -1.5954 4.8653 4.0208 21 6 -1.7217 5.1863 6.1273 22 7 -1.3886 4.7422 7.3196 23 14 -2.7368 6.7455 5.9614 24 1 -4.0083 6.4361 5.2597 25 1 -3.0351 7.2880 7.3112 26 1 -1.9733 7.7525 5.1815 27 1 -0.3634 0.5907 0.8409 28 1 -0.3633 0.4329 -0.9321 29 1 -0.3633 -1.0236 0.0910 30 1 1.8934 -0.5139 -0.8899 31 1 3.1242 1.4446 -0.1126 32 1 1.5877 1.9877 -0.8284 33 1 1.7715 1.9229 0.9410 34 1 3.5015 -1.9582 1.9657 35 1 3.5572 -1.7131 0.2036 36 1 2.0818 -3.6162 2.9364 37 1 0.7160 -5.6392 2.6148 38 1 0.5448 -4.8529 -1.5776 39 1 1.9018 -2.8247 -1.2506 40 1 0.6043 1.3305 1.7573 41 1 0.0751 0.6677 4.4512 42 1 1.5692 1.6335 4.3943 43 1 0.3648 3.4230 3.1706 44 1 -1.1289 2.4567 3.2279 45 1 -1.0633 2.5035 5.7066 46 1 0.4304 3.4699 5.6485 47 1 -1.6698 5.2246 8.1128 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264134530.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:51:49 Heat of formation + Delta-G solvation = -49.360737 kcal Electronic energy + Delta-G solvation = -27139.492529 eV Core-core repulsion = 23236.923193 eV Total energy + Delta-G solvation = -3902.569335 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -49.13072 -40.71193 -39.14607 -36.58181 -35.64473 -33.62244 -32.65186 -31.39830 -31.06455 -30.41571 -27.48366 -27.03760 -25.63572 -23.60048 -23.18023 -22.04255 -21.75993 -20.74538 -19.55370 -17.93583 -17.20040 -16.93758 -16.42876 -16.26747 -16.16779 -15.80161 -15.25924 -14.70090 -14.53784 -14.50721 -14.29329 -14.06479 -13.90762 -13.77553 -13.63111 -13.39048 -12.79819 -12.44398 -12.32002 -12.29712 -12.19939 -11.82170 -11.67735 -11.64660 -11.53843 -11.22343 -11.08872 -10.88387 -10.65706 -10.60843 -10.07068 -9.85498 -9.44245 -9.36074 -9.13741 -9.00155 -8.84060 -8.47479 -8.36692 -6.01488 -4.04654 0.81268 0.98399 2.68411 3.31021 3.31786 3.36673 3.38332 3.42402 3.95683 4.00332 4.41662 4.44463 4.50375 4.53475 4.63180 4.78850 4.88136 4.89845 5.02661 5.24504 5.31449 5.34152 5.43018 5.45956 5.52541 5.52904 5.66477 5.71013 5.73213 5.81484 5.85070 5.95028 5.97917 6.01100 6.19515 6.25125 6.40763 6.55599 6.62562 6.62999 6.81411 7.02974 7.04216 7.63834 7.77084 7.97318 8.07724 8.38231 8.74963 9.01801 9.59367 11.09772 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018364 B = 0.002381 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.321615 B =11757.624360 C =12228.895942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.134 3.866 3 C -0.185 4.185 4 N -0.626 5.626 5 C 0.173 3.827 6 C -0.114 4.114 7 C -0.062 4.062 8 C -0.156 4.156 9 C 0.097 3.903 10 F -0.143 7.143 11 C -0.159 4.159 12 C -0.079 4.079 13 C 0.706 3.294 14 O -0.590 6.590 15 N -0.745 5.745 16 C 0.129 3.871 17 C -0.120 4.120 18 C 0.025 3.975 19 C -0.523 4.523 20 H 0.054 0.946 21 C 0.057 3.943 22 N -0.894 5.894 23 Si 0.893 3.107 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.140 0.860 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.129 0.871 40 H 0.399 0.601 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.499 -16.547 -20.232 27.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.030 3.970 3 C -0.243 4.243 4 N -0.363 5.363 5 C 0.050 3.950 6 C -0.116 4.116 7 C -0.081 4.081 8 C -0.175 4.175 9 C 0.078 3.922 10 F -0.121 7.121 11 C -0.178 4.178 12 C -0.097 4.097 13 C 0.408 3.592 14 O -0.468 6.468 15 N -0.407 5.407 16 C 0.006 3.994 17 C -0.158 4.158 18 C -0.012 4.012 19 C -0.561 4.561 20 H 0.073 0.927 21 C -0.144 4.144 22 N -0.533 5.533 23 Si 0.721 3.279 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.157 0.843 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.147 0.853 40 H 0.241 0.759 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.702 -16.951 -19.291 27.115 hybrid contribution -1.036 0.837 -0.455 1.407 sum 7.667 -16.114 -19.746 26.614 Atomic orbital electron populations 1.22476 0.94981 1.03334 1.03095 1.21099 0.94312 0.93361 0.88202 1.22532 1.02281 0.95835 1.03670 1.47346 1.52882 1.31528 1.04541 1.20181 0.90138 0.81025 1.03676 1.20408 1.00652 0.97331 0.93194 1.21129 0.94979 0.92316 0.99658 1.21217 1.00931 0.99419 0.95906 1.17773 0.94900 0.84918 0.94653 1.91494 1.74334 1.50094 1.96198 1.21085 1.01941 0.96418 0.98367 1.20872 0.96398 0.95557 0.96911 1.15957 0.79046 0.81212 0.82992 1.90884 1.61082 1.58269 1.36531 1.46294 1.57003 1.26528 1.10827 1.21526 0.99845 0.96079 0.81944 1.21884 0.97793 0.93820 1.02324 1.19013 0.97000 0.95631 0.89605 1.21164 1.33468 1.08990 0.92484 0.92734 1.25028 0.96259 0.97770 0.95382 1.69959 1.46071 1.39751 0.97488 0.86647 0.80678 0.83466 0.77129 1.20257 1.21271 1.20255 0.91278 0.90970 0.91714 0.89090 0.91761 0.90964 0.90771 0.88491 0.89832 0.84257 0.84755 0.84919 0.85298 0.75874 0.91944 0.92025 0.92890 0.92901 0.96251 0.96256 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 8.97 37.16 0.33 -1.21 16 2 C 0.13 1.07 3.27 -67.93 -0.22 0.85 16 3 C -0.18 -1.47 9.04 37.16 0.34 -1.13 16 4 N -0.63 -6.74 2.41 -173.16 -0.42 -7.16 16 5 C 0.17 1.58 5.49 -5.19 -0.03 1.55 16 6 C -0.11 -1.07 5.46 -104.62 -0.57 -1.64 16 7 C -0.06 -0.66 9.68 -39.59 -0.38 -1.04 16 8 C -0.16 -1.59 10.03 -39.51 -0.40 -1.99 16 9 C 0.10 0.99 7.30 -39.42 -0.29 0.70 16 10 F -0.14 -1.57 17.27 2.25 0.04 -1.53 16 11 C -0.16 -1.35 10.03 -39.51 -0.40 -1.75 16 12 C -0.08 -0.61 9.72 -39.59 -0.38 -1.00 16 13 C 0.71 10.62 7.66 -86.92 -0.67 9.96 16 14 O -0.59 -10.94 15.91 5.29 0.08 -10.86 16 15 N -0.75 -11.02 3.96 -65.23 -0.26 -11.27 16 16 C 0.13 2.31 5.68 -4.05 -0.02 2.29 16 17 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 18 C 0.03 0.64 4.97 -27.88 -0.14 0.50 16 19 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 20 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 23 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H 0.07 0.72 5.20 -51.93 -0.27 0.45 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.52 7.65 -51.93 -0.40 0.12 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.75 5.07 -51.92 -0.26 0.49 16 34 H 0.10 1.02 7.26 -51.93 -0.38 0.64 16 35 H 0.08 0.52 8.02 -51.93 -0.42 0.10 16 36 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 38 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 39 H 0.13 0.67 7.83 -52.49 -0.41 0.26 16 40 H 0.40 5.03 2.99 -40.82 -0.12 4.91 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 386.47 15.07 5.82 5.82 Total: -1.00 -32.69 386.47 -9.69 -42.38 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -7.29 Total: 2.02 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -3.38 Total: -9.74 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.06 Total: -44.51 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.08 Total: -10.86 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.69 -9.69 -42.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264134530.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.983 kcal (2) G-P(sol) polarization free energy of solvation -32.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds