Wall clock time and date at job start Sat Apr 11 2020 00:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35946 * 116.99656 * 2 1 4 4 C 1.38746 * 120.00340 * 359.97438 * 3 2 1 5 5 C 1.38241 * 120.10315 * 180.02562 * 4 3 2 6 6 C 1.38278 * 120.10083 * 359.72010 * 5 4 3 7 7 F 1.35098 * 119.99610 * 180.30055 * 6 5 4 8 8 C 1.39081 * 119.99838 * 0.57629 * 6 5 4 9 9 N 1.39835 * 120.05226 * 179.69731 * 8 6 5 10 10 C 1.46954 * 111.00085 * 119.72565 * 9 8 6 11 11 C 1.53049 * 109.38155 * 176.82279 * 10 9 8 12 12 N 1.46962 * 109.36560 * 58.39574 * 11 10 9 13 13 C 1.46896 * 111.00041 * 176.81142 * 12 11 10 14 14 H 1.09005 * 109.46843 * 178.90237 * 13 12 11 15 15 C 1.53003 * 109.47299 * 58.90006 * 13 12 11 16 16 C 1.53004 * 109.47151 * 298.90092 * 13 12 11 17 17 C 1.50700 * 109.46803 * 295.41631 * 16 13 12 18 18 H 1.08001 * 120.00483 * 4.86820 * 17 16 13 19 19 C 1.37873 * 119.99850 * 184.87179 * 17 16 13 20 20 N 1.31514 * 120.00298 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00095 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47287 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47248 * 120.00217 * 21 19 17 24 24 H 1.48504 * 109.47090 * 240.00254 * 21 19 17 25 25 C 1.46957 * 110.87711 * 300.67934 * 12 11 10 26 26 C 1.46966 * 111.01702 * 355.91620 * 9 8 6 27 27 C 1.38608 * 119.99461 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47189 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46987 * 299.99900 * 1 2 3 30 30 H 1.08998 * 109.47001 * 60.00218 * 1 2 3 31 31 H 1.08004 * 119.94270 * 0.02562 * 4 3 2 32 32 H 1.08000 * 119.94674 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.48581 * 56.84683 * 10 9 8 34 34 H 1.09001 * 109.49303 * 296.80597 * 10 9 8 35 35 H 1.09005 * 109.49013 * 178.36044 * 11 10 9 36 36 H 1.09002 * 109.49195 * 298.40631 * 11 10 9 37 37 H 1.08993 * 109.46771 * 60.00027 * 15 13 12 38 38 H 1.09000 * 109.46629 * 179.97438 * 15 13 12 39 39 H 1.08994 * 109.46901 * 299.99860 * 15 13 12 40 40 H 1.08996 * 109.46862 * 55.41386 * 16 13 12 41 41 H 1.08993 * 109.46998 * 175.41768 * 16 13 12 42 42 H 0.96994 * 120.00436 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.48713 * 179.28755 * 25 12 11 44 44 H 1.09008 * 109.48837 * 299.35171 * 25 12 11 45 45 H 1.09005 * 109.46858 * 63.19959 * 26 9 8 46 46 H 1.09000 * 109.50254 * 303.16123 * 26 9 8 47 47 H 1.07998 * 120.05198 * 0.03032 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2904 2.3749 -0.0005 5 6 1.9158 3.6078 -0.0011 6 6 3.2964 3.6851 0.0048 7 9 3.9054 4.8911 0.0104 8 6 4.0581 2.5214 -0.0009 9 7 5.4543 2.5983 -0.0014 10 6 6.0183 1.9427 1.1867 11 6 7.5464 1.9786 1.1094 12 7 7.9970 3.3745 1.0180 13 6 9.4637 3.4553 1.0180 14 1 9.7702 4.4977 0.9300 15 6 10.0184 2.6589 -0.1648 16 6 10.0066 2.8727 2.3245 17 6 9.5516 3.7244 3.4815 18 1 8.8731 4.5474 3.3123 19 6 10.0015 3.4528 4.7562 20 7 10.8274 2.4503 4.9624 21 14 9.4381 4.5089 6.1904 22 1 8.5169 5.5637 5.6965 23 1 8.7311 3.6598 7.1826 24 1 10.6180 5.1423 6.8322 25 6 7.4334 4.0300 -0.1703 26 6 5.9053 3.9940 -0.0931 27 6 3.4303 1.2838 0.0005 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2119 2.3173 -0.0005 32 1 1.3251 4.5120 -0.0011 33 1 5.6804 0.9071 1.2254 34 1 5.6870 2.4669 2.0831 35 1 7.9667 1.5187 2.0038 36 1 7.8790 1.4304 0.2279 37 1 9.6317 3.0739 -1.0955 38 1 11.1067 2.7193 -0.1650 39 1 9.7120 1.6167 -0.0767 40 1 9.6331 1.8568 2.4522 41 1 11.0959 2.8578 2.2907 42 1 11.1442 2.2595 5.8591 43 1 7.7712 5.0656 -0.2090 44 1 7.7646 3.5054 -1.0666 45 1 5.5727 4.5420 0.7886 46 1 5.4849 4.4543 -0.9873 47 1 4.0193 0.3786 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411621072.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:48:35 Heat of formation + Delta-G solvation = -17.121323 kcal Electronic energy + Delta-G solvation = -28105.580871 eV Core-core repulsion = 24204.409542 eV Total energy + Delta-G solvation = -3901.171329 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.16442 -40.46803 -39.37026 -37.61442 -35.74174 -32.88336 -31.47665 -30.75700 -30.44693 -28.82502 -27.49146 -27.28673 -25.39300 -24.06165 -23.05101 -22.25622 -21.79112 -20.45208 -18.76384 -18.27891 -17.46316 -16.84383 -16.25919 -16.11725 -16.03414 -15.77135 -15.12579 -14.98984 -14.68943 -14.51387 -14.23204 -13.93564 -13.81768 -13.48522 -13.15248 -13.07662 -12.81374 -12.64148 -12.46872 -12.05904 -11.75118 -11.68585 -11.61038 -11.27501 -11.17997 -11.07369 -10.89793 -10.68904 -10.56462 -10.35555 -10.20540 -9.85064 -9.68787 -9.12883 -8.96137 -8.49407 -8.26291 -7.82448 -7.47135 -5.89068 -3.86971 1.01046 1.06816 2.90078 3.33887 3.38016 3.45747 3.51758 3.84675 4.16795 4.44824 4.52488 4.57643 4.70927 4.78228 4.82927 4.96940 5.13513 5.15179 5.18350 5.35570 5.44709 5.48072 5.64426 5.65746 5.72218 5.78085 5.81352 5.88103 5.90923 5.99578 6.02549 6.04265 6.10688 6.22300 6.26017 6.37368 6.46024 6.60428 6.70682 6.94970 6.98549 7.06362 7.19896 7.54380 7.68523 7.89654 8.01219 8.12886 8.58618 9.20604 9.75357 11.22826 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014548 B = 0.003269 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.159336 B = 8562.825412 C = 8988.443542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.143 3.857 4 C -0.214 4.214 5 C -0.088 4.088 6 C 0.012 3.988 7 F -0.134 7.134 8 C 0.136 3.864 9 N -0.488 5.488 10 C 0.061 3.939 11 C 0.056 3.944 12 N -0.513 5.513 13 C 0.087 3.913 14 H 0.071 0.929 15 C -0.184 4.184 16 C 0.028 3.972 17 C -0.491 4.491 18 H 0.062 0.938 19 C 0.050 3.950 20 N -0.903 5.903 21 Si 0.888 3.112 22 H -0.273 1.273 23 H -0.287 1.287 24 H -0.287 1.287 25 C 0.047 3.953 26 C 0.047 3.953 27 C -0.150 4.150 28 H 0.100 0.900 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.100 0.900 36 H 0.036 0.964 37 H 0.041 0.959 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.016 0.984 41 H 0.022 0.978 42 H 0.257 0.743 43 H 0.077 0.923 44 H 0.035 0.965 45 H 0.070 0.930 46 H 0.086 0.914 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.922 -2.255 -12.901 23.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.227 6.227 3 C 0.097 3.903 4 C -0.234 4.234 5 C -0.107 4.107 6 C -0.010 4.010 7 F -0.113 7.113 8 C 0.036 3.964 9 N -0.203 5.203 10 C -0.063 4.063 11 C -0.072 4.072 12 N -0.237 5.237 13 C -0.021 4.021 14 H 0.089 0.911 15 C -0.243 4.243 16 C -0.009 4.009 17 C -0.529 4.529 18 H 0.080 0.920 19 C -0.149 4.149 20 N -0.544 5.544 21 Si 0.716 3.284 22 H -0.198 1.198 23 H -0.214 1.214 24 H -0.214 1.214 25 C -0.081 4.081 26 C -0.079 4.079 27 C -0.171 4.171 28 H 0.118 0.882 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.152 0.848 32 H 0.154 0.846 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.118 0.882 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.034 0.966 41 H 0.041 0.959 42 H 0.066 0.934 43 H 0.095 0.905 44 H 0.053 0.947 45 H 0.088 0.912 46 H 0.104 0.896 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -19.611 -2.474 -12.734 23.513 hybrid contribution -0.380 0.838 0.676 1.142 sum -19.991 -1.636 -12.058 23.403 Atomic orbital electron populations 1.23076 0.78252 1.04035 1.01432 1.86094 1.21446 1.26590 1.88559 1.18749 0.91768 0.84240 0.95577 1.20935 1.00126 0.91300 1.11009 1.20778 0.92269 0.98614 0.99088 1.17675 0.90973 0.80198 1.12176 1.91480 1.82426 1.42791 1.94604 1.18790 0.89377 0.91583 0.96683 1.59385 1.03350 1.18340 1.39211 1.22432 0.95955 0.98750 0.89213 1.22208 0.92221 0.90679 1.02125 1.62312 1.09825 1.14716 1.36799 1.21915 0.84727 0.99281 0.96140 0.91106 1.22511 1.01481 1.01084 0.99188 1.19237 0.95861 0.96040 0.89753 1.21239 1.26181 1.14111 0.91413 0.91966 1.25012 0.95489 0.95473 0.98908 1.69969 1.33752 1.29449 1.21277 0.86597 0.78361 0.80605 0.82795 1.19775 1.21350 1.21377 1.22291 0.93370 0.99761 0.92724 1.23073 0.95739 0.86359 1.02776 1.19804 0.91298 0.97014 1.08994 0.88168 0.92506 0.92575 0.84819 0.84597 0.90047 0.92517 0.88153 0.94611 0.94003 0.92556 0.92918 0.96570 0.95928 0.93372 0.90459 0.94705 0.91177 0.89577 0.83903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.19 10.50 -19.57 -0.21 -3.40 16 3 C 0.14 1.59 6.68 -39.26 -0.26 1.32 16 4 C -0.21 -2.06 9.04 -39.39 -0.36 -2.42 16 5 C -0.09 -0.93 10.01 -39.57 -0.40 -1.33 16 6 C 0.01 0.16 6.97 -39.25 -0.27 -0.12 16 7 F -0.13 -1.88 12.22 2.25 0.03 -1.85 16 8 C 0.14 1.86 5.57 -83.70 -0.47 1.40 16 9 N -0.49 -7.29 4.75 -170.89 -0.81 -8.10 16 10 C 0.06 0.96 5.42 -3.77 -0.02 0.94 16 11 C 0.06 0.99 4.82 -3.76 -0.02 0.98 16 12 N -0.51 -9.76 4.39 -226.48 -0.99 -10.75 16 13 C 0.09 1.77 2.30 -67.71 -0.16 1.62 16 14 H 0.07 1.48 8.12 -51.93 -0.42 1.06 16 15 C -0.18 -3.19 8.49 37.16 0.32 -2.88 16 16 C 0.03 0.70 4.26 -27.88 -0.12 0.59 16 17 C -0.49 -13.67 8.83 -34.44 -0.30 -13.98 16 18 H 0.06 1.75 7.73 -52.49 -0.41 1.35 16 19 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 20 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 21 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 C 0.05 0.77 5.25 -3.77 -0.02 0.75 16 26 C 0.05 0.72 3.99 -3.77 -0.02 0.70 16 27 C -0.15 -1.87 9.15 -39.25 -0.36 -2.23 16 28 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.28 7.66 -51.93 -0.40 -0.11 16 30 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 31 H 0.13 0.91 6.29 -52.48 -0.33 0.58 16 32 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.08 1.12 7.02 -51.93 -0.36 0.76 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.10 2.02 6.08 -51.93 -0.32 1.71 16 36 H 0.04 0.61 6.47 -51.93 -0.34 0.28 16 37 H 0.04 0.66 6.59 -51.93 -0.34 0.31 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.91 6.46 -51.93 -0.34 0.58 16 40 H 0.02 0.42 6.13 -51.93 -0.32 0.11 16 41 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.08 1.21 8.12 -51.93 -0.42 0.78 16 44 H 0.03 0.55 6.59 -51.92 -0.34 0.21 16 45 H 0.07 1.17 6.59 -51.93 -0.34 0.83 16 46 H 0.09 1.22 6.71 -51.93 -0.35 0.87 16 47 H 0.14 1.71 7.41 -52.49 -0.39 1.32 16 LS Contribution 362.59 15.07 5.46 5.46 Total: -1.00 -30.97 362.59 -9.42 -40.38 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -7.06 Total: -0.31 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -1.56 Total: -12.15 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: -1.07 Total: -45.22 kcal Atomic # 8 Polarization: -3.19 SS G_CDS: -0.21 Total: -3.40 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.03 Total: -1.85 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.97 -9.42 -40.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411621072.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.261 kcal (2) G-P(sol) polarization free energy of solvation -30.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds