Wall clock time and date at job start Sat Apr 11 2020 00:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47162 * 2 1 4 4 N 1.46500 * 109.46746 * 182.01948 * 3 2 1 5 5 C 1.46504 * 120.00332 * 275.82954 * 4 3 2 6 6 C 1.50693 * 109.47295 * 270.00106 * 5 4 3 7 7 C 1.38236 * 119.97791 * 269.72374 * 6 5 4 8 8 C 1.38208 * 120.02716 * 179.72700 * 7 6 5 9 9 C 1.38458 * 119.96905 * 0.57176 * 8 7 6 10 10 F 1.35100 * 120.02169 * 179.68083 * 9 8 7 11 11 C 1.38451 * 119.95084 * 359.70323 * 9 8 7 12 12 C 1.38196 * 119.97713 * 359.97438 * 11 9 8 13 13 C 1.34778 * 119.99813 * 95.83456 * 4 3 2 14 14 O 1.21287 * 119.99948 * 185.15956 * 13 4 3 15 15 C 1.50700 * 120.00060 * 4.89153 * 13 4 3 16 16 H 1.09000 * 109.47071 * 32.19901 * 15 13 4 17 17 N 1.46894 * 109.47289 * 152.20367 * 15 13 4 18 18 C 1.52999 * 109.47105 * 272.20255 * 15 13 4 19 19 C 1.52993 * 109.47562 * 174.36115 * 18 15 13 20 20 C 1.50694 * 109.47475 * 180.02562 * 19 18 15 21 21 H 1.07995 * 120.00188 * 359.97438 * 20 19 18 22 22 C 1.37877 * 120.00109 * 180.02562 * 20 19 18 23 23 N 1.31514 * 120.00175 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00011 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47045 * 89.99785 * 24 22 20 26 26 H 1.48500 * 109.47027 * 209.99801 * 24 22 20 27 27 H 1.48505 * 109.46973 * 329.99799 * 24 22 20 28 28 H 1.09003 * 109.46853 * 300.00081 * 1 2 3 29 29 H 1.09005 * 109.47265 * 59.99308 * 1 2 3 30 30 H 1.08997 * 109.47530 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46853 * 239.99919 * 2 1 3 32 32 H 1.09004 * 109.46748 * 120.00677 * 2 1 3 33 33 H 1.09004 * 109.46979 * 62.02934 * 3 2 1 34 34 H 1.08994 * 109.47679 * 302.01897 * 3 2 1 35 35 H 1.08999 * 109.46801 * 30.00806 * 5 4 3 36 36 H 1.09000 * 109.46847 * 149.99898 * 5 4 3 37 37 H 1.08006 * 119.98762 * 359.97438 * 7 6 5 38 38 H 1.08002 * 120.00937 * 180.25426 * 8 7 6 39 39 H 1.08001 * 120.01198 * 179.97438 * 11 9 8 40 40 H 1.08002 * 119.98719 * 179.97438 * 12 11 9 41 41 H 1.00897 * 111.00486 * 60.00091 * 17 15 13 42 42 H 1.00906 * 111.00243 * 183.95260 * 17 15 13 43 43 H 1.08999 * 109.46866 * 294.36676 * 18 15 13 44 44 H 1.09004 * 109.47216 * 54.36067 * 18 15 13 45 45 H 1.09001 * 109.46975 * 300.00149 * 19 18 15 46 46 H 1.09004 * 109.46894 * 59.99755 * 19 18 15 47 47 H 0.96998 * 120.00182 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5042 1.4426 -0.0487 5 6 4.2783 1.2990 1.1868 6 6 4.5488 2.6614 1.7713 7 6 5.6923 3.3513 1.4146 8 6 5.9387 4.6033 1.9457 9 6 5.0455 5.1613 2.8445 10 9 5.2885 6.3823 3.3692 11 6 3.9034 4.4669 3.2054 12 6 3.6558 3.2180 2.6680 13 6 4.1391 1.5750 -1.2301 14 8 5.3472 1.4815 -1.2831 15 6 3.3475 1.8331 -2.4862 16 1 2.4630 2.4221 -2.2437 17 7 4.1792 2.5710 -3.4462 18 6 2.9190 0.4997 -3.1020 19 6 1.9989 0.7615 -4.2961 20 6 1.5764 -0.5519 -4.9022 21 1 1.9291 -1.4805 -4.4785 22 6 0.7403 -0.5680 -5.9984 23 7 0.3111 0.5628 -6.5148 24 14 0.2171 -2.1961 -6.7502 25 1 -1.0342 -2.6620 -6.1002 26 1 -0.0182 -2.0164 -8.2054 27 1 1.2878 -3.2039 -6.5426 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5140 0.8900 33 1 1.7067 1.9456 0.9077 34 1 1.6475 1.9667 -0.8713 35 1 3.7128 0.7023 1.9025 36 1 5.2239 0.8033 0.9675 37 1 6.3916 2.9136 0.7174 38 1 6.8302 5.1438 1.6636 39 1 3.2062 4.9010 3.9068 40 1 2.7652 2.6760 2.9497 41 1 5.0060 2.0454 -3.6873 42 1 3.6511 2.8126 -4.2714 43 1 3.8012 -0.0465 -3.4360 44 1 2.3870 -0.0908 -2.3561 45 1 1.1167 1.3076 -3.9620 46 1 2.5310 1.3520 -5.0420 47 1 -0.2774 0.5515 -7.2857 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424082013.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:48:40 Heat of formation + Delta-G solvation = -73.220003 kcal Electronic energy + Delta-G solvation = -27594.772160 eV Core-core repulsion = 23691.168210 eV Total energy + Delta-G solvation = -3903.603951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.07627 -40.31983 -38.97249 -36.25117 -35.61012 -33.25436 -32.84727 -31.33494 -31.19796 -29.91769 -27.38067 -26.42812 -25.40942 -23.51146 -23.23959 -21.89701 -21.56855 -20.45553 -18.68494 -17.85133 -17.52194 -16.58954 -16.44645 -16.13236 -16.02030 -15.73884 -14.86329 -14.74786 -14.69964 -14.46470 -14.03762 -13.96970 -13.75003 -13.55731 -13.33574 -13.22456 -12.81226 -12.43736 -12.20155 -12.17278 -12.14843 -12.07250 -11.71144 -11.54874 -11.33375 -11.13594 -11.04601 -10.89827 -10.73974 -10.63393 -9.93351 -9.80223 -9.32284 -9.30005 -9.24719 -8.80825 -8.63451 -8.44971 -8.19022 -6.09966 -4.12946 0.87695 1.04380 2.86642 2.97434 3.25303 3.32567 3.35661 3.53325 4.06050 4.37590 4.44479 4.59131 4.68382 4.69659 4.84663 5.00567 5.02902 5.07491 5.17381 5.26365 5.33925 5.35787 5.42342 5.50141 5.56045 5.67442 5.73593 5.79467 5.80274 5.85237 5.91429 6.05250 6.05866 6.07465 6.31296 6.32895 6.43262 6.49616 6.61973 6.68894 6.90774 7.35361 7.50412 7.56393 7.62897 7.86966 7.88907 8.29742 8.39025 8.92958 9.52031 11.00882 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019838 B = 0.002852 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.119070 B = 9816.006303 C =10415.772631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.148 4.148 3 C 0.105 3.895 4 N -0.611 5.611 5 C 0.155 3.845 6 C -0.113 4.113 7 C -0.064 4.064 8 C -0.155 4.155 9 C 0.097 3.903 10 F -0.143 7.143 11 C -0.158 4.158 12 C -0.079 4.079 13 C 0.532 3.468 14 O -0.538 6.538 15 C 0.074 3.926 16 H 0.095 0.905 17 N -0.832 5.832 18 C -0.143 4.143 19 C 0.027 3.973 20 C -0.522 4.522 21 H 0.054 0.946 22 C 0.059 3.941 23 N -0.893 5.893 24 Si 0.891 3.109 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.274 1.274 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.139 0.861 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.345 0.655 42 H 0.354 0.646 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.017 0.983 46 H 0.016 0.984 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.588 4.782 19.794 20.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.186 4.186 3 C -0.018 4.018 4 N -0.344 5.344 5 C 0.032 3.968 6 C -0.114 4.114 7 C -0.083 4.083 8 C -0.174 4.174 9 C 0.077 3.923 10 F -0.121 7.121 11 C -0.177 4.177 12 C -0.097 4.097 13 C 0.321 3.679 14 O -0.414 6.414 15 C -0.041 4.041 16 H 0.113 0.887 17 N -0.364 5.364 18 C -0.182 4.182 19 C -0.010 4.010 20 C -0.560 4.560 21 H 0.072 0.928 22 C -0.142 4.142 23 N -0.532 5.532 24 Si 0.719 3.281 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.199 1.199 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.157 0.843 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.149 0.851 41 H 0.159 0.841 42 H 0.169 0.831 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.036 0.964 46 H 0.035 0.965 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.212 5.404 20.191 21.542 hybrid contribution -0.661 -1.372 -0.992 1.818 sum 4.551 4.032 19.198 20.138 Atomic orbital electron populations 1.21683 0.94832 1.02222 1.02001 1.22097 0.96626 0.96808 1.03098 1.21788 0.78936 0.97547 1.03516 1.47990 1.06738 1.73818 1.05901 1.20256 0.98210 0.92413 0.85915 1.20367 0.95107 0.98185 0.97780 1.21121 0.96897 0.93106 0.97180 1.21193 1.00431 0.97120 0.98633 1.17765 0.96279 0.81461 0.96771 1.91492 1.94391 1.41131 1.85125 1.21092 0.97283 0.96207 1.03127 1.20916 0.98682 0.94355 0.95774 1.20910 0.88118 0.74377 0.84532 1.90599 1.14665 1.49859 1.86227 1.21552 0.95222 0.96795 0.90554 0.88685 1.58788 1.10501 1.48300 1.18842 1.22527 1.00929 0.94338 1.00432 1.19073 0.93564 0.97295 0.91109 1.21156 1.28952 0.92617 1.13280 0.92776 1.24998 0.96117 0.96277 0.96841 1.69945 1.34111 1.25508 1.23610 0.86613 0.78982 0.84070 0.78472 1.20614 1.21168 1.19903 0.93095 0.91743 0.92392 0.90190 0.92140 0.90870 0.89221 0.89669 0.88818 0.84348 0.84777 0.84853 0.85113 0.84146 0.83073 0.92730 0.91787 0.96430 0.96538 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 37.16 0.37 -1.20 16 2 C -0.15 -1.62 6.12 -26.74 -0.16 -1.79 16 3 C 0.10 1.14 5.24 -4.05 -0.02 1.12 16 4 N -0.61 -7.66 2.46 -175.07 -0.43 -8.09 16 5 C 0.15 1.63 5.59 -5.19 -0.03 1.60 16 6 C -0.11 -1.19 5.46 -104.62 -0.57 -1.76 16 7 C -0.06 -0.74 9.70 -39.59 -0.38 -1.12 16 8 C -0.15 -1.69 10.03 -39.51 -0.40 -2.09 16 9 C 0.10 1.06 7.30 -39.42 -0.29 0.77 16 10 F -0.14 -1.65 17.27 2.25 0.04 -1.61 16 11 C -0.16 -1.50 10.03 -39.52 -0.40 -1.90 16 12 C -0.08 -0.71 9.70 -39.59 -0.38 -1.09 16 13 C 0.53 8.50 6.85 -10.98 -0.08 8.43 16 14 O -0.54 -9.84 15.68 5.55 0.09 -9.75 16 15 C 0.07 1.23 2.47 -68.87 -0.17 1.06 16 16 H 0.10 1.54 6.05 -51.93 -0.31 1.22 16 17 N -0.83 -14.18 9.02 -5.66 -0.05 -14.23 16 18 C -0.14 -2.74 4.76 -26.73 -0.13 -2.86 16 19 C 0.03 0.63 4.75 -27.89 -0.13 0.50 16 20 C -0.52 -13.99 9.11 -34.44 -0.31 -14.30 16 21 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 22 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 23 N -0.89 -25.62 13.29 55.43 0.74 -24.89 16 24 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.09 5.27 -51.93 -0.27 0.81 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.63 8.11 -51.93 -0.42 0.21 16 34 H 0.09 1.08 5.57 -51.93 -0.29 0.79 16 35 H 0.08 0.68 8.02 -51.93 -0.42 0.27 16 36 H 0.09 1.09 7.30 -51.93 -0.38 0.71 16 37 H 0.14 1.70 7.86 -52.48 -0.41 1.28 16 38 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 40 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.35 5.96 8.55 -39.29 -0.34 5.62 16 42 H 0.35 6.07 7.58 -39.29 -0.30 5.77 16 43 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.06 1.17 4.92 -51.93 -0.26 0.91 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.02 0.41 6.88 -51.93 -0.36 0.05 16 47 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 386.24 15.07 5.82 5.82 Total: -1.00 -30.41 386.24 -9.10 -39.51 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -7.10 Total: 10.37 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -3.18 Total: -13.10 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 0.26 Total: -47.20 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.41 -9.10 -39.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424082013.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.708 kcal (2) G-P(sol) polarization free energy of solvation -30.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds