Wall clock time and date at job start Sat Apr 11 2020 00:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47540 * 2 1 4 4 C 1.34778 * 120.00157 * 275.50703 * 3 2 1 5 5 O 1.21284 * 119.99962 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.99813 * 359.97438 * 4 3 2 7 7 H 1.08993 * 109.47385 * 39.99556 * 6 4 3 8 8 N 1.46897 * 109.46960 * 160.00234 * 6 4 3 9 9 C 1.53001 * 109.46840 * 280.00027 * 6 4 3 10 10 C 1.53006 * 109.47083 * 175.00494 * 9 6 4 11 11 C 1.50697 * 109.46907 * 179.97438 * 10 9 6 12 12 H 1.07995 * 120.00217 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99815 * 179.97438 * 11 10 9 14 14 N 1.31519 * 120.00156 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00019 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47320 * 89.99834 * 15 13 11 17 17 H 1.48505 * 109.47191 * 210.00037 * 15 13 11 18 18 H 1.48501 * 109.47170 * 329.99546 * 15 13 11 19 19 C 1.46503 * 119.99868 * 95.50036 * 3 2 1 20 20 H 1.09003 * 109.47090 * 185.27169 * 19 3 2 21 21 C 1.52998 * 109.47307 * 305.27400 * 19 3 2 22 22 C 1.50699 * 109.46922 * 65.27533 * 19 3 2 23 23 C 1.38246 * 119.97413 * 30.99164 * 22 19 3 24 24 C 1.38198 * 120.02544 * 179.97438 * 23 22 19 25 25 C 1.38461 * 119.97503 * 0.02562 * 24 23 22 26 26 F 1.35094 * 120.02909 * 179.97438 * 25 24 23 27 27 C 1.38467 * 119.94581 * 0.24859 * 25 24 23 28 28 C 1.38195 * 119.97285 * 359.47315 * 27 25 24 29 29 H 1.09000 * 109.46718 * 300.00051 * 1 2 3 30 30 H 1.08995 * 109.47143 * 59.99376 * 1 2 3 31 31 H 1.08994 * 109.47312 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47135 * 240.00555 * 2 1 3 33 33 H 1.09002 * 109.47679 * 120.00256 * 2 1 3 34 34 H 1.00903 * 111.00362 * 296.04217 * 8 6 4 35 35 H 1.00896 * 111.00244 * 59.99585 * 8 6 4 36 36 H 1.09002 * 109.47066 * 294.99973 * 9 6 4 37 37 H 1.08995 * 109.47154 * 54.99976 * 9 6 4 38 38 H 1.09002 * 109.46744 * 299.99676 * 10 9 6 39 39 H 1.08998 * 109.47080 * 59.99904 * 10 9 6 40 40 H 0.96992 * 120.00181 * 179.97438 * 14 13 11 41 41 H 1.08998 * 109.46770 * 299.99606 * 21 19 3 42 42 H 1.08994 * 109.47268 * 60.00094 * 21 19 3 43 43 H 1.09005 * 109.46867 * 179.97438 * 21 19 3 44 44 H 1.07998 * 119.98893 * 0.03070 * 23 22 19 45 45 H 1.07995 * 120.01570 * 180.02562 * 24 23 22 46 46 H 1.07999 * 120.00816 * 179.75007 * 27 25 24 47 47 H 1.07999 * 119.98776 * 180.29794 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1375 2.0539 -1.1618 5 8 2.5414 3.1975 -1.1617 6 6 1.7687 1.3851 -2.4609 7 1 0.8684 0.7873 -2.3192 8 7 1.5210 2.4083 -3.4854 9 6 2.9164 0.4792 -2.9119 10 6 2.4943 -0.2942 -4.1628 11 6 3.6250 -1.1858 -4.6073 12 1 4.5516 -1.1999 -4.0528 13 6 3.4759 -1.9846 -5.7212 14 7 2.3469 -1.9686 -6.3956 15 14 4.8771 -3.0904 -6.2718 16 1 4.7512 -4.4147 -5.6118 17 1 4.8206 -3.2644 -7.7456 18 1 6.1734 -2.4712 -5.8960 19 6 2.3773 2.0312 1.2629 20 1 2.6269 3.0757 1.0759 21 6 1.1942 1.9549 2.2301 22 6 3.5667 1.3311 1.8680 23 6 4.5100 0.7391 1.0489 24 6 5.6015 0.0972 1.6026 25 6 5.7497 0.0467 2.9783 26 9 6.8160 -0.5810 3.5207 27 6 4.8013 0.6350 3.7978 28 6 3.7137 1.2813 3.2417 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 0.7258 2.9794 -3.2412 35 1 2.3415 2.9761 -3.6352 36 1 3.7917 1.0877 -3.1391 37 1 3.1593 -0.2235 -2.1149 38 1 1.6190 -0.9026 -3.9356 39 1 2.2515 0.4086 -4.9598 40 1 2.2422 -2.5302 -7.1794 41 1 0.3340 2.4614 1.7924 42 1 0.9446 0.9105 2.4171 43 1 1.4614 2.4382 3.1699 44 1 4.3945 0.7791 -0.0242 45 1 6.3385 -0.3648 0.9625 46 1 4.9138 0.5927 4.8711 47 1 2.9763 1.7444 3.8805 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424086502.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:48:51 Heat of formation + Delta-G solvation = -65.299086 kcal Electronic energy + Delta-G solvation = -28073.017111 eV Core-core repulsion = 24169.756637 eV Total energy + Delta-G solvation = -3903.260474 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.04838 -40.70305 -39.09715 -36.45698 -35.40999 -33.09623 -32.67971 -31.39942 -30.20600 -30.05130 -29.10124 -26.53695 -24.52730 -23.77774 -23.00467 -22.92502 -21.10682 -20.09815 -19.05282 -17.91048 -17.46113 -16.71284 -16.31755 -16.19773 -15.76523 -15.54313 -15.50323 -14.97809 -14.55129 -14.30444 -13.97514 -13.92469 -13.75645 -13.59007 -13.41946 -13.05359 -12.74950 -12.57988 -12.52807 -12.29628 -12.25296 -12.00669 -11.63096 -11.54360 -11.23963 -11.15178 -11.08168 -10.85466 -10.65127 -10.54866 -10.09377 -9.79508 -9.39379 -9.30883 -9.02454 -8.86672 -8.69098 -8.36319 -8.21459 -5.95675 -3.97959 0.90110 1.03141 2.68820 2.92248 3.33262 3.40206 3.40380 3.43291 4.06766 4.37189 4.47199 4.49813 4.66291 4.68532 4.86664 4.91830 4.98669 5.01521 5.12635 5.18159 5.22279 5.30170 5.39721 5.40256 5.51168 5.63459 5.68552 5.71645 5.74015 5.78233 5.83036 5.88768 5.94172 6.06803 6.15997 6.22551 6.38445 6.55970 6.63037 6.68152 7.04345 7.29348 7.48893 7.73429 7.77244 7.93345 8.10626 8.22553 8.45809 9.09883 9.65476 11.15146 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010671 B = 0.003901 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.362070 B = 7175.655914 C = 8930.063375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.095 3.905 3 N -0.604 5.604 4 C 0.486 3.514 5 O -0.552 6.552 6 C 0.076 3.924 7 H 0.101 0.899 8 N -0.807 5.807 9 C -0.097 4.097 10 C 0.033 3.967 11 C -0.522 4.522 12 H 0.051 0.949 13 C 0.059 3.941 14 N -0.892 5.892 15 Si 0.887 3.113 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.275 1.275 19 C 0.174 3.826 20 H 0.111 0.889 21 C -0.159 4.159 22 C -0.105 4.105 23 C -0.070 4.070 24 C -0.149 4.149 25 C 0.094 3.906 26 F -0.142 7.142 27 C -0.155 4.155 28 C -0.088 4.088 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.333 0.667 35 H 0.347 0.653 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.013 0.987 39 H 0.035 0.965 40 H 0.259 0.741 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.133 0.867 45 H 0.137 0.863 46 H 0.134 0.866 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.287 6.169 21.318 22.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.028 4.028 3 N -0.337 5.337 4 C 0.273 3.727 5 O -0.430 6.430 6 C -0.040 4.040 7 H 0.119 0.881 8 N -0.335 5.335 9 C -0.136 4.136 10 C -0.005 4.005 11 C -0.561 4.561 12 H 0.070 0.930 13 C -0.142 4.142 14 N -0.531 5.531 15 Si 0.715 3.285 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.200 1.200 19 C 0.070 3.930 20 H 0.129 0.871 21 C -0.217 4.217 22 C -0.106 4.106 23 C -0.089 4.089 24 C -0.168 4.168 25 C 0.075 3.925 26 F -0.121 7.121 27 C -0.174 4.174 28 C -0.106 4.106 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.145 0.855 35 H 0.161 0.839 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.031 0.969 39 H 0.053 0.947 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.151 0.849 45 H 0.155 0.845 46 H 0.152 0.848 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.247 6.064 20.642 21.631 hybrid contribution 1.190 -0.223 0.615 1.358 sum -1.056 5.840 21.257 22.070 Atomic orbital electron populations 1.22338 0.95707 1.02744 1.02504 1.21750 0.94623 0.82040 1.04367 1.48182 1.65368 1.14518 1.05658 1.22836 0.76236 0.86722 0.86859 1.90637 1.46741 1.18461 1.87156 1.21942 1.02156 0.94728 0.85155 0.88103 1.59004 1.10247 1.20047 1.44179 1.21720 0.94549 0.96382 1.00902 1.19004 0.95988 0.94251 0.91209 1.21256 1.00245 1.23394 1.11183 0.93031 1.24974 0.95529 0.97115 0.96579 1.69969 1.24641 1.39842 1.18649 0.86676 0.82877 0.81068 0.77843 1.20770 1.21253 1.19986 1.19828 0.91418 0.97956 0.83780 0.87133 1.22257 0.97746 1.02878 0.98841 1.20287 0.97096 0.99671 0.93538 1.20966 0.92122 0.95002 1.00782 1.21229 1.00127 1.02218 0.93177 1.17767 0.85807 0.97099 0.91858 1.91495 1.54009 1.80170 1.86395 1.21091 0.95079 1.00992 1.00231 1.20908 0.97222 0.98314 0.94169 0.92234 0.92063 0.91186 0.88661 0.90268 0.85498 0.83869 0.92842 0.92721 0.96881 0.94664 0.93089 0.91700 0.91549 0.91286 0.84870 0.84510 0.84836 0.84722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 9.80 37.16 0.36 -1.29 16 2 C 0.09 1.02 4.59 -4.04 -0.02 1.01 16 3 N -0.60 -7.22 1.42 -167.42 -0.24 -7.46 16 4 C 0.49 7.28 6.72 -10.98 -0.07 7.20 16 5 O -0.55 -9.69 15.59 5.55 0.09 -9.60 16 6 C 0.08 1.22 2.33 -68.87 -0.16 1.06 16 7 H 0.10 1.56 5.62 -51.93 -0.29 1.27 16 8 N -0.81 -13.28 8.44 -5.66 -0.05 -13.33 16 9 C -0.10 -1.88 4.48 -26.73 -0.12 -2.00 16 10 C 0.03 0.81 4.86 -27.88 -0.14 0.67 16 11 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 12 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 15 Si 0.89 21.48 29.54 -169.99 -5.02 16.45 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 C 0.17 1.84 3.03 -69.08 -0.21 1.63 16 20 H 0.11 1.38 6.92 -51.93 -0.36 1.02 16 21 C -0.16 -1.23 7.32 37.16 0.27 -0.96 16 22 C -0.10 -1.10 4.86 -104.62 -0.51 -1.61 16 23 C -0.07 -0.85 9.01 -39.59 -0.36 -1.21 16 24 C -0.15 -1.74 10.03 -39.51 -0.40 -2.13 16 25 C 0.09 1.06 7.30 -39.42 -0.29 0.77 16 26 F -0.14 -1.71 17.27 2.25 0.04 -1.67 16 27 C -0.16 -1.45 10.03 -39.51 -0.40 -1.84 16 28 C -0.09 -0.77 9.14 -39.60 -0.36 -1.13 16 29 H 0.06 0.50 6.05 -51.93 -0.31 0.18 16 30 H 0.06 0.65 6.58 -51.93 -0.34 0.30 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.10 1.20 5.01 -51.93 -0.26 0.94 16 33 H 0.08 0.77 7.30 -51.93 -0.38 0.39 16 34 H 0.33 4.76 9.06 -39.29 -0.36 4.41 16 35 H 0.35 5.82 8.58 -39.29 -0.34 5.48 16 36 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.05 0.98 6.30 -51.93 -0.33 0.66 16 38 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.03 0.96 7.75 -51.93 -0.40 0.55 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.06 0.53 7.97 -51.93 -0.41 0.11 16 42 H 0.07 0.48 6.62 -51.93 -0.34 0.14 16 43 H 0.07 0.41 6.51 -51.93 -0.34 0.07 16 44 H 0.13 1.80 7.30 -52.49 -0.38 1.41 16 45 H 0.14 1.50 8.06 -52.49 -0.42 1.07 16 46 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 47 H 0.14 0.84 6.14 -52.49 -0.32 0.52 16 LS Contribution 375.21 15.07 5.65 5.65 Total: -1.00 -31.43 375.21 -8.41 -39.85 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -6.83 Total: 8.82 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -2.80 Total: -12.98 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 0.45 Total: -46.52 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.43 -8.41 -39.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424086502.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.453 kcal (2) G-P(sol) polarization free energy of solvation -31.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds