Wall clock time and date at job start Sat Apr 11 2020 00:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47540 * 2 1 4 4 C 1.34778 * 120.00157 * 275.50703 * 3 2 1 5 5 O 1.21284 * 119.99962 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.99813 * 359.97438 * 4 3 2 7 7 H 1.08993 * 109.47385 * 39.99556 * 6 4 3 8 8 N 1.46897 * 109.46960 * 160.00234 * 6 4 3 9 9 C 1.53001 * 109.46840 * 280.00027 * 6 4 3 10 10 C 1.53006 * 109.47083 * 175.00494 * 9 6 4 11 11 C 1.50697 * 109.46907 * 179.97438 * 10 9 6 12 12 H 1.07995 * 120.00217 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99815 * 179.97438 * 11 10 9 14 14 N 1.31519 * 120.00156 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00019 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47320 * 89.99834 * 15 13 11 17 17 H 1.48505 * 109.47191 * 210.00037 * 15 13 11 18 18 H 1.48501 * 109.47170 * 329.99546 * 15 13 11 19 19 C 1.46503 * 119.99868 * 95.50036 * 3 2 1 20 20 H 1.09003 * 109.47090 * 185.27169 * 19 3 2 21 21 C 1.52998 * 109.47307 * 305.27400 * 19 3 2 22 22 C 1.50699 * 109.46922 * 65.27533 * 19 3 2 23 23 C 1.38246 * 119.97413 * 30.99164 * 22 19 3 24 24 C 1.38198 * 120.02544 * 179.97438 * 23 22 19 25 25 C 1.38461 * 119.97503 * 0.02562 * 24 23 22 26 26 F 1.35094 * 120.02909 * 179.97438 * 25 24 23 27 27 C 1.38467 * 119.94581 * 0.24859 * 25 24 23 28 28 C 1.38195 * 119.97285 * 359.47315 * 27 25 24 29 29 H 1.09000 * 109.46718 * 300.00051 * 1 2 3 30 30 H 1.08995 * 109.47143 * 59.99376 * 1 2 3 31 31 H 1.08994 * 109.47312 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47135 * 240.00555 * 2 1 3 33 33 H 1.09002 * 109.47679 * 120.00256 * 2 1 3 34 34 H 1.00903 * 111.00362 * 296.04217 * 8 6 4 35 35 H 1.00896 * 111.00244 * 59.99585 * 8 6 4 36 36 H 1.09002 * 109.47066 * 294.99973 * 9 6 4 37 37 H 1.08995 * 109.47154 * 54.99976 * 9 6 4 38 38 H 1.09002 * 109.46744 * 299.99676 * 10 9 6 39 39 H 1.08998 * 109.47080 * 59.99904 * 10 9 6 40 40 H 0.96992 * 120.00181 * 179.97438 * 14 13 11 41 41 H 1.08998 * 109.46770 * 299.99606 * 21 19 3 42 42 H 1.08994 * 109.47268 * 60.00094 * 21 19 3 43 43 H 1.09005 * 109.46867 * 179.97438 * 21 19 3 44 44 H 1.07998 * 119.98893 * 0.03070 * 23 22 19 45 45 H 1.07995 * 120.01570 * 180.02562 * 24 23 22 46 46 H 1.07999 * 120.00816 * 179.75007 * 27 25 24 47 47 H 1.07999 * 119.98776 * 180.29794 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1375 2.0539 -1.1618 5 8 2.5414 3.1975 -1.1617 6 6 1.7687 1.3851 -2.4609 7 1 0.8684 0.7873 -2.3192 8 7 1.5210 2.4083 -3.4854 9 6 2.9164 0.4792 -2.9119 10 6 2.4943 -0.2942 -4.1628 11 6 3.6250 -1.1858 -4.6073 12 1 4.5516 -1.1999 -4.0528 13 6 3.4759 -1.9846 -5.7212 14 7 2.3469 -1.9686 -6.3956 15 14 4.8771 -3.0904 -6.2718 16 1 4.7512 -4.4147 -5.6118 17 1 4.8206 -3.2644 -7.7456 18 1 6.1734 -2.4712 -5.8960 19 6 2.3773 2.0312 1.2629 20 1 2.6269 3.0757 1.0759 21 6 1.1942 1.9549 2.2301 22 6 3.5667 1.3311 1.8680 23 6 4.5100 0.7391 1.0489 24 6 5.6015 0.0972 1.6026 25 6 5.7497 0.0467 2.9783 26 9 6.8160 -0.5810 3.5207 27 6 4.8013 0.6350 3.7978 28 6 3.7137 1.2813 3.2417 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 0.7258 2.9794 -3.2412 35 1 2.3415 2.9761 -3.6352 36 1 3.7917 1.0877 -3.1391 37 1 3.1593 -0.2235 -2.1149 38 1 1.6190 -0.9026 -3.9356 39 1 2.2515 0.4086 -4.9598 40 1 2.2422 -2.5302 -7.1794 41 1 0.3340 2.4614 1.7924 42 1 0.9446 0.9105 2.4171 43 1 1.4614 2.4382 3.1699 44 1 4.3945 0.7791 -0.0242 45 1 6.3385 -0.3648 0.9625 46 1 4.9138 0.5927 4.8711 47 1 2.9763 1.7444 3.8805 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424086502.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:48:50 Heat of formation + Delta-G solvation = -83.462563 kcal Electronic energy + Delta-G solvation = -28073.804738 eV Core-core repulsion = 24169.756637 eV Total energy + Delta-G solvation = -3904.048101 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.93169 -41.75895 -40.05780 -37.47329 -36.92534 -34.87991 -33.77900 -32.20937 -31.94635 -31.02711 -29.88806 -28.16582 -25.94188 -24.69720 -24.15863 -23.81024 -22.41667 -21.49437 -20.13840 -18.78729 -18.65146 -18.34690 -17.56473 -17.16133 -16.95321 -16.66975 -16.56265 -16.40977 -15.94431 -15.47405 -15.09931 -14.96707 -14.62451 -14.58016 -14.45932 -14.26101 -14.03438 -13.78373 -13.52973 -13.48058 -13.30499 -13.20813 -12.98273 -12.80928 -12.53981 -12.39923 -12.16056 -12.10201 -11.97563 -11.92851 -11.63985 -11.53486 -11.21599 -10.97066 -10.48519 -10.11094 -9.85394 -9.64465 -9.51996 -8.13593 -6.23469 0.06528 0.22974 1.41009 1.42312 1.46575 1.52952 1.91995 2.44194 2.57620 3.19663 3.24397 3.41398 3.58618 3.69915 3.73401 3.92217 4.02667 4.06601 4.11012 4.24121 4.30105 4.35275 4.38391 4.44977 4.52858 4.65153 4.77596 4.87042 4.90141 4.90888 4.93261 5.00036 5.04236 5.12982 5.21124 5.24731 5.28207 5.38635 5.42267 5.57400 5.66392 5.84188 5.87065 5.98583 6.07716 6.29673 6.31282 6.50403 6.94685 7.05391 7.44587 8.97556 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010671 B = 0.003901 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.362070 B = 7175.655914 C = 8930.063375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.093 3.907 3 N -0.593 5.593 4 C 0.491 3.509 5 O -0.580 6.580 6 C 0.083 3.917 7 H 0.109 0.891 8 N -0.819 5.819 9 C -0.082 4.082 10 C 0.043 3.957 11 C -0.542 4.542 12 H 0.054 0.946 13 C 0.005 3.995 14 N -0.928 5.928 15 Si 0.955 3.045 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.268 1.268 19 C 0.173 3.827 20 H 0.092 0.908 21 C -0.154 4.154 22 C -0.107 4.107 23 C -0.088 4.088 24 C -0.162 4.162 25 C 0.079 3.921 26 F -0.149 7.149 27 C -0.146 4.146 28 C -0.075 4.075 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.346 0.654 35 H 0.344 0.656 36 H 0.039 0.961 37 H 0.067 0.933 38 H -0.005 1.005 39 H 0.005 0.995 40 H 0.262 0.738 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.110 0.890 45 H 0.132 0.868 46 H 0.162 0.838 47 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.612 5.882 24.198 25.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.029 4.029 3 N -0.324 5.324 4 C 0.278 3.722 5 O -0.460 6.460 6 C -0.032 4.032 7 H 0.127 0.873 8 N -0.348 5.348 9 C -0.120 4.120 10 C 0.006 3.994 11 C -0.580 4.580 12 H 0.072 0.928 13 C -0.193 4.193 14 N -0.568 5.568 15 Si 0.780 3.220 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.193 1.193 19 C 0.070 3.930 20 H 0.110 0.890 21 C -0.211 4.211 22 C -0.108 4.108 23 C -0.107 4.107 24 C -0.181 4.181 25 C 0.060 3.940 26 F -0.128 7.128 27 C -0.164 4.164 28 C -0.092 4.092 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.013 0.987 39 H 0.023 0.977 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.113 0.887 44 H 0.128 0.872 45 H 0.150 0.850 46 H 0.179 0.821 47 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -2.582 5.760 23.560 24.391 hybrid contribution 1.288 -0.134 -0.246 1.318 sum -1.294 5.625 23.314 24.018 Atomic orbital electron populations 1.22305 0.94228 1.03554 1.02721 1.21826 0.95753 0.81107 1.04167 1.48151 1.64023 1.14727 1.05533 1.22356 0.76282 0.86331 0.87252 1.90626 1.48243 1.19594 1.87561 1.21706 1.01057 0.94373 0.86061 0.87329 1.58978 1.10698 1.20358 1.44763 1.21428 0.95156 0.96464 0.98962 1.18790 0.94685 0.93428 0.92534 1.21691 1.00993 1.23833 1.11466 0.92812 1.25838 0.98074 0.98656 0.96698 1.70095 1.26690 1.40858 1.19180 0.85600 0.79701 0.79284 0.77366 1.19635 1.20934 1.19294 1.19978 0.92925 0.96663 0.83478 0.88989 1.22253 0.96047 1.03932 0.98906 1.20337 0.96559 0.99468 0.94416 1.20838 0.93248 0.96630 0.99936 1.21237 1.00221 1.02782 0.93835 1.17971 0.86338 0.97857 0.91862 1.91475 1.54517 1.80454 1.86377 1.21430 0.94100 0.99470 1.01446 1.21237 0.97438 0.97148 0.93423 0.90423 0.93387 0.90119 0.90812 0.88545 0.84082 0.84225 0.94191 0.91491 0.98660 0.97693 0.92934 0.91888 0.90452 0.88659 0.87156 0.84976 0.82085 0.81191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 9.80 71.98 0.71 -2.20 16 2 C 0.09 1.91 4.59 86.38 0.40 2.31 16 3 N -0.59 -13.71 1.42 -801.99 -1.14 -14.85 16 4 C 0.49 14.82 6.72 87.66 0.59 15.41 16 5 O -0.58 -20.64 15.59 -3.04 -0.05 -20.68 16 6 C 0.08 2.77 2.33 44.17 0.10 2.87 16 7 H 0.11 3.42 5.62 -2.39 -0.01 3.41 16 8 N -0.82 -27.84 8.44 -171.81 -1.45 -29.29 16 9 C -0.08 -3.28 4.48 30.60 0.14 -3.15 16 10 C 0.04 2.20 4.86 29.85 0.15 2.35 16 11 C -0.54 -30.54 9.11 25.60 0.23 -30.31 16 12 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 13 C 0.01 0.31 5.46 84.65 0.46 0.77 16 14 N -0.93 -56.20 13.29 21.45 0.28 -55.91 16 15 Si 0.96 44.36 29.54 68.60 2.03 46.39 16 16 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 C 0.17 3.33 3.03 44.24 0.13 3.47 16 20 H 0.09 2.19 6.92 -2.39 -0.02 2.17 16 21 C -0.15 -1.80 7.32 71.98 0.53 -1.28 16 22 C -0.11 -2.04 4.86 -19.86 -0.10 -2.14 16 23 C -0.09 -2.11 9.01 22.26 0.20 -1.91 16 24 C -0.16 -3.79 10.03 22.31 0.22 -3.57 16 25 C 0.08 1.67 7.30 22.38 0.16 1.83 16 26 F -0.15 -3.45 17.27 44.97 0.78 -2.67 16 27 C -0.15 -2.25 10.03 22.31 0.22 -2.03 16 28 C -0.07 -1.03 9.14 22.26 0.20 -0.82 16 29 H 0.08 1.05 6.05 -2.39 -0.01 1.04 16 30 H 0.05 0.96 6.58 -2.39 -0.02 0.94 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.85 5.01 -2.38 -0.01 1.84 16 33 H 0.10 1.67 7.30 -2.39 -0.02 1.65 16 34 H 0.35 10.07 9.06 -89.69 -0.81 9.25 16 35 H 0.34 12.02 8.58 -89.70 -0.77 11.25 16 36 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.07 2.49 6.30 -2.39 -0.02 2.48 16 38 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 39 H 0.00 0.27 7.75 -2.39 -0.02 0.25 16 40 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 41 H 0.06 0.81 7.97 -2.39 -0.02 0.79 16 42 H 0.08 0.77 6.62 -2.39 -0.02 0.76 16 43 H 0.09 0.65 6.51 -2.38 -0.02 0.64 16 44 H 0.11 3.11 7.30 -2.91 -0.02 3.09 16 45 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 46 H 0.16 1.61 8.06 -2.91 -0.02 1.58 16 47 H 0.17 1.15 6.14 -2.91 -0.02 1.13 16 Total: -1.00 -69.66 375.21 4.23 -65.43 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: -0.57 Total: 29.99 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: 4.35 Total: -18.39 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -2.30 Total: -100.06 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.05 Total: -20.68 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.78 Total: -2.67 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -69.66 4.23 -65.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424086502.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.034 kcal (2) G-P(sol) polarization free energy of solvation -69.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds