Wall clock time and date at job start Sat Apr 11 2020 00:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46944 * 2 1 4 4 N 1.46497 * 109.46982 * 120.00199 * 2 1 3 5 5 C 1.46499 * 120.00090 * 119.37102 * 4 2 1 6 6 C 1.50702 * 109.47057 * 276.60653 * 5 4 2 7 7 C 1.38263 * 119.98915 * 253.61796 * 6 5 4 8 8 C 1.38228 * 120.04911 * 179.72054 * 7 6 5 9 9 C 1.38214 * 120.02808 * 0.55840 * 8 7 6 10 10 C 1.38440 * 119.97260 * 359.71467 * 9 8 7 11 11 F 1.35104 * 120.02648 * 180.02562 * 10 9 8 12 12 C 1.38182 * 119.98528 * 73.89329 * 6 5 4 13 13 C 1.34777 * 119.99930 * 299.36760 * 4 2 1 14 14 O 1.21284 * 120.00108 * 4.80549 * 13 4 2 15 15 C 1.50699 * 120.00314 * 184.80773 * 13 4 2 16 16 H 1.09002 * 109.46891 * 21.63967 * 15 13 4 17 17 N 1.46900 * 109.47639 * 141.63714 * 15 13 4 18 18 C 1.53001 * 109.47319 * 261.64041 * 15 13 4 19 19 C 1.53004 * 109.47158 * 174.13435 * 18 15 13 20 20 C 1.50698 * 109.46698 * 179.97438 * 19 18 15 21 21 H 1.07998 * 120.00643 * 0.02562 * 20 19 18 22 22 C 1.37883 * 119.99531 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00128 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99930 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47224 * 359.97438 * 24 22 20 26 26 H 1.48491 * 109.47338 * 120.00031 * 24 22 20 27 27 H 1.48503 * 109.47009 * 240.00262 * 24 22 20 28 28 H 1.09000 * 109.46939 * 305.93790 * 1 2 3 29 29 H 1.09000 * 109.47012 * 65.93073 * 1 2 3 30 30 H 1.08998 * 109.47299 * 185.93413 * 1 2 3 31 31 H 1.08998 * 109.46541 * 240.00005 * 2 1 3 32 32 H 1.09006 * 109.46576 * 183.79999 * 3 2 1 33 33 H 1.08996 * 109.47352 * 303.79305 * 3 2 1 34 34 H 1.08998 * 109.47278 * 63.79887 * 3 2 1 35 35 H 1.08998 * 109.47017 * 156.61378 * 5 4 2 36 36 H 1.08995 * 109.46966 * 36.60759 * 5 4 2 37 37 H 1.07997 * 119.97646 * 359.97438 * 7 6 5 38 38 H 1.08000 * 119.98593 * 180.27595 * 8 7 6 39 39 H 1.08004 * 120.01594 * 179.69992 * 9 8 7 40 40 H 1.07996 * 120.01006 * 359.97387 * 12 6 5 41 41 H 1.00901 * 110.99331 * 59.99772 * 17 15 13 42 42 H 1.00895 * 111.00366 * 183.95610 * 17 15 13 43 43 H 1.08996 * 109.46900 * 294.13672 * 18 15 13 44 44 H 1.08999 * 109.47228 * 54.13575 * 18 15 13 45 45 H 1.08996 * 109.47409 * 299.99925 * 19 18 15 46 46 H 1.08999 * 109.46936 * 59.99962 * 19 18 15 47 47 H 0.97000 * 119.99844 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8492 -1.8898 1.0618 6 6 1.9650 -3.0937 0.8618 7 6 1.7897 -4.0008 1.8904 8 6 0.9745 -5.1025 1.7102 9 6 0.3426 -5.3045 0.4977 10 6 0.5219 -4.3998 -0.5348 11 9 -0.0956 -4.5959 -1.7204 12 6 1.3343 -3.2935 -0.3514 13 6 1.7033 -0.2228 2.4202 14 8 0.9451 0.7170 2.5336 15 6 2.2930 -0.8674 3.6481 16 1 3.2027 -1.4028 3.3760 17 7 2.6125 0.1684 4.6396 18 6 1.2823 -1.8494 4.2440 19 6 1.9319 -2.6101 5.4017 20 6 0.9361 -3.5768 5.9890 21 1 -0.0603 -3.6424 5.5775 22 6 1.2971 -4.3776 7.0518 23 7 2.5102 -4.2974 7.5533 24 14 0.0631 -5.5764 7.7794 25 1 -1.2214 -5.4735 7.0413 26 1 0.5905 -6.9598 7.6655 27 1 -0.1612 -5.2484 9.2103 28 1 -0.3633 0.6032 0.8321 29 1 -0.3633 0.4191 -0.9383 30 1 -0.3634 -1.0221 0.1062 31 1 1.8933 -0.5138 -0.8900 32 1 3.1279 1.4432 -0.0681 33 1 1.6223 1.9756 -0.8540 34 1 1.7333 1.9363 0.9220 35 1 3.4445 -2.0223 1.9651 36 1 3.5113 -1.7786 0.2032 37 1 2.2869 -3.8465 2.8366 38 1 0.8347 -5.8081 2.5158 39 1 -0.2905 -6.1679 0.3556 40 1 1.4746 -2.5868 -1.1559 41 1 1.7848 0.6792 4.9081 42 1 3.0684 -0.2313 5.4460 43 1 0.4153 -1.3002 4.6111 44 1 0.9665 -2.5562 3.4767 45 1 2.7989 -3.1593 5.0346 46 1 2.2477 -1.9034 6.1691 47 1 2.7642 -4.8610 8.3008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424093770.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:48:58 Heat of formation + Delta-G solvation = -66.100545 kcal Electronic energy + Delta-G solvation = -28716.721069 eV Core-core repulsion = 24813.425841 eV Total energy + Delta-G solvation = -3903.295228 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.89361 -40.47969 -38.81560 -36.40585 -35.42020 -33.29093 -32.72187 -30.97751 -30.45086 -29.84861 -27.12539 -26.73118 -26.04790 -24.15714 -22.76641 -21.86602 -21.68862 -20.28221 -18.61282 -17.48668 -17.10965 -16.49532 -16.29439 -16.17241 -15.92928 -15.58036 -15.03818 -14.83828 -14.49056 -14.15758 -13.99778 -13.72249 -13.57416 -13.40163 -13.17095 -13.02440 -12.88798 -12.68804 -12.22205 -12.16047 -11.91144 -11.81435 -11.61323 -11.54883 -11.28166 -11.20152 -11.06075 -10.99174 -10.73049 -10.65732 -10.00090 -9.79809 -9.27394 -9.14235 -8.99010 -8.66996 -8.61588 -8.46523 -8.20485 -6.12384 -4.15097 1.11748 1.23748 2.90026 3.01500 3.22775 3.31904 3.35454 3.68442 4.19839 4.36155 4.58652 4.62817 4.70539 4.90155 5.05307 5.09736 5.15109 5.19352 5.21832 5.24439 5.28439 5.38328 5.44222 5.65073 5.65636 5.68603 5.79252 5.84049 5.87371 5.95699 6.05897 6.14548 6.23895 6.29996 6.37032 6.39854 6.52592 6.54658 6.72423 6.85526 6.92738 7.37204 7.49133 7.54365 7.60301 7.84577 7.86043 8.28033 8.43837 8.91326 9.50289 10.98372 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010290 B = 0.005000 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.467993 B = 5598.759752 C = 7639.278867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.146 3.854 3 C -0.168 4.168 4 N -0.608 5.608 5 C 0.143 3.857 6 C -0.084 4.084 7 C -0.104 4.104 8 C -0.082 4.082 9 C -0.152 4.152 10 C 0.087 3.913 11 F -0.145 7.145 12 C -0.140 4.140 13 C 0.535 3.465 14 O -0.532 6.532 15 C 0.069 3.931 16 H 0.093 0.907 17 N -0.833 5.833 18 C -0.144 4.144 19 C 0.027 3.973 20 C -0.520 4.520 21 H 0.055 0.945 22 C 0.061 3.939 23 N -0.892 5.892 24 Si 0.888 3.112 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.284 1.284 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.145 0.855 38 H 0.139 0.861 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.346 0.654 42 H 0.354 0.646 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.017 0.983 46 H 0.017 0.983 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.330 2.943 -16.614 16.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.044 3.956 3 C -0.225 4.225 4 N -0.342 5.342 5 C 0.020 3.980 6 C -0.085 4.085 7 C -0.122 4.122 8 C -0.100 4.100 9 C -0.171 4.171 10 C 0.068 3.932 11 F -0.124 7.124 12 C -0.160 4.160 13 C 0.324 3.676 14 O -0.407 6.407 15 C -0.045 4.045 16 H 0.111 0.889 17 N -0.365 5.365 18 C -0.183 4.183 19 C -0.010 4.010 20 C -0.558 4.558 21 H 0.073 0.927 22 C -0.141 4.141 23 N -0.531 5.531 24 Si 0.716 3.284 25 H -0.197 1.197 26 H -0.209 1.209 27 H -0.210 1.210 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.120 0.880 36 H 0.106 0.894 37 H 0.163 0.837 38 H 0.157 0.843 39 H 0.150 0.850 40 H 0.146 0.854 41 H 0.159 0.841 42 H 0.169 0.831 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.035 0.965 46 H 0.035 0.965 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.484 3.726 -17.033 17.498 hybrid contribution -1.470 -1.533 0.828 2.280 sum 0.013 2.193 -16.204 16.352 Atomic orbital electron populations 1.22233 0.94924 1.02683 1.02848 1.20972 0.94739 0.93136 0.86786 1.22183 1.00706 0.96050 1.03611 1.48099 1.52847 1.27327 1.05925 1.20635 0.91363 0.81602 1.04370 1.20082 0.98717 0.96600 0.93124 1.21496 0.98148 0.93536 0.99034 1.21156 0.94887 0.97716 0.96256 1.21199 1.02581 1.00047 0.93293 1.17649 0.96780 0.96925 0.81825 1.91477 1.81171 1.95114 1.44646 1.20886 0.99110 0.97306 0.98673 1.20788 0.80129 0.82650 0.84045 1.90570 1.35248 1.28721 1.86209 1.21642 0.99400 0.92614 0.90869 0.88881 1.58830 1.32301 1.27401 1.17980 1.22502 0.97773 0.97602 1.00430 1.19086 0.95858 0.94546 0.91540 1.21185 0.98525 1.20647 1.15477 0.92704 1.24979 0.95172 0.97236 0.96707 1.69950 1.18179 1.39838 1.25159 0.86598 0.81625 0.81008 0.79190 1.19746 1.20945 1.20977 0.90176 0.92420 0.92689 0.90266 0.92838 0.92081 0.90287 0.87974 0.89376 0.83719 0.84341 0.85039 0.85350 0.84088 0.83061 0.92623 0.91804 0.96493 0.96495 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 9.02 37.16 0.34 -1.77 16 2 C 0.15 1.68 2.87 -67.93 -0.20 1.48 16 3 C -0.17 -1.90 9.17 37.16 0.34 -1.56 16 4 N -0.61 -7.81 2.41 -167.47 -0.40 -8.22 16 5 C 0.14 1.56 5.51 -5.19 -0.03 1.53 16 6 C -0.08 -1.01 5.46 -104.63 -0.57 -1.58 16 7 C -0.10 -1.41 7.65 -39.58 -0.30 -1.71 16 8 C -0.08 -1.09 10.04 -39.59 -0.40 -1.49 16 9 C -0.15 -1.89 10.03 -39.52 -0.40 -2.28 16 10 C 0.09 1.10 7.30 -39.42 -0.29 0.82 16 11 F -0.15 -1.88 17.27 2.25 0.04 -1.84 16 12 C -0.14 -1.64 9.26 -39.51 -0.37 -2.01 16 13 C 0.53 8.56 6.17 -10.99 -0.07 8.49 16 14 O -0.53 -9.83 12.78 5.55 0.07 -9.75 16 15 C 0.07 1.13 2.73 -68.86 -0.19 0.94 16 16 H 0.09 1.40 5.56 -51.93 -0.29 1.11 16 17 N -0.83 -13.65 9.11 -5.65 -0.05 -13.71 16 18 C -0.14 -2.72 4.31 -26.73 -0.12 -2.84 16 19 C 0.03 0.61 4.66 -27.88 -0.13 0.48 16 20 C -0.52 -13.54 9.11 -34.44 -0.31 -13.86 16 21 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 22 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 23 N -0.89 -24.98 13.29 55.43 0.74 -24.25 16 24 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 H 0.08 1.21 6.26 -51.93 -0.32 0.89 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.74 8.02 -51.93 -0.42 0.32 16 31 H 0.08 0.73 6.89 -51.93 -0.36 0.37 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.13 6.19 -51.93 -0.32 0.81 16 35 H 0.10 1.11 5.18 -51.93 -0.27 0.84 16 36 H 0.09 0.73 8.06 -51.93 -0.42 0.32 16 37 H 0.15 2.15 6.65 -52.49 -0.35 1.80 16 38 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 40 H 0.13 1.28 7.00 -52.49 -0.37 0.91 16 41 H 0.35 5.85 8.58 -39.29 -0.34 5.51 16 42 H 0.35 5.82 7.58 -39.29 -0.30 5.52 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.06 1.18 5.19 -51.93 -0.27 0.91 16 45 H 0.02 0.40 7.99 -51.93 -0.41 -0.02 16 46 H 0.02 0.41 6.89 -51.93 -0.36 0.05 16 47 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 375.21 15.07 5.65 5.65 Total: -1.00 -29.39 375.21 -8.62 -38.01 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -6.87 Total: 12.32 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -2.78 Total: -13.82 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: 0.28 Total: -46.17 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.07 Total: -9.75 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.39 -8.62 -38.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424093770.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.090 kcal (2) G-P(sol) polarization free energy of solvation -29.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds