Wall clock time and date at job start Sat Apr 11 2020 00:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 5 5 N 1.46505 * 109.47212 * 300.00138 * 4 2 1 6 6 C 1.34771 * 119.99622 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00597 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99622 * 179.97438 * 6 5 4 9 9 H 1.09001 * 109.47273 * 320.00628 * 8 6 5 10 10 N 1.46898 * 109.47332 * 200.00286 * 8 6 5 11 11 C 1.53001 * 109.47184 * 80.00611 * 8 6 5 12 12 C 1.52997 * 109.47226 * 185.00106 * 11 8 6 13 13 C 1.50706 * 109.47103 * 179.97438 * 12 11 8 14 14 H 1.07997 * 119.99702 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99943 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99948 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 120.00138 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47321 * 89.99581 * 17 15 13 19 19 H 1.48501 * 109.47210 * 209.99894 * 17 15 13 20 20 H 1.48506 * 109.46961 * 329.99571 * 17 15 13 21 21 C 1.50697 * 109.47239 * 240.00432 * 2 1 3 22 22 C 1.38220 * 120.01471 * 359.97438 * 21 2 1 23 23 C 1.38225 * 120.02755 * 179.97438 * 22 21 2 24 24 C 1.38265 * 120.04998 * 0.03051 * 23 22 21 25 25 C 1.38176 * 120.02622 * 359.97438 * 24 23 22 26 26 C 1.38439 * 120.01324 * 179.72266 * 21 2 1 27 27 F 1.35099 * 120.02572 * 359.97438 * 26 21 2 28 28 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 29 29 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 33 33 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 34 34 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 36 36 H 0.96996 * 119.99606 * 0.02562 * 5 4 2 37 37 H 1.00898 * 111.00035 * 300.00646 * 10 8 6 38 38 H 1.00906 * 111.00264 * 63.95556 * 10 8 6 39 39 H 1.09003 * 109.47078 * 304.99846 * 11 8 6 40 40 H 1.09000 * 109.47480 * 64.99693 * 11 8 6 41 41 H 1.08998 * 109.47180 * 299.99521 * 12 11 8 42 42 H 1.09000 * 109.47435 * 59.99944 * 12 11 8 43 43 H 0.96996 * 120.00175 * 180.02562 * 16 15 13 44 44 H 1.08002 * 119.98661 * 0.02562 * 22 21 2 45 45 H 1.08000 * 119.97187 * 180.02562 * 23 22 21 46 46 H 1.08003 * 119.98577 * 179.97438 * 24 23 22 47 47 H 1.07999 * 120.01421 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.5517 -0.0306 2.4454 6 6 1.8769 -0.4914 3.6695 7 8 2.5742 -1.4775 3.7808 8 6 1.3750 0.2193 4.8999 9 1 1.4229 1.2968 4.7421 10 7 2.2117 -0.1446 6.0512 11 6 -0.0732 -0.1925 5.1717 12 6 -0.6232 0.6210 6.3450 13 6 -2.0499 0.2158 6.6123 14 1 -2.5174 -0.5461 6.0062 15 6 -2.7579 0.8169 7.6313 16 7 -4.0031 0.4637 7.8642 17 14 -1.9490 2.1341 8.6801 18 1 -2.1813 3.4667 8.0673 19 1 -2.5334 2.1082 10.0450 20 1 -0.4891 1.8745 8.7617 21 6 2.0324 -0.7103 -1.2305 22 6 1.1345 -1.2361 -2.1403 23 6 1.5950 -1.8872 -3.2693 24 6 2.9541 -2.0139 -3.4896 25 6 3.8536 -1.4891 -2.5814 26 6 3.3934 -0.8319 -1.4527 27 9 4.2720 -0.3135 -0.5670 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 -0.7208 1.2495 35 1 1.6767 -1.7489 1.2492 36 1 0.9937 0.7578 2.3564 37 1 2.1842 -1.1393 6.2182 38 1 3.1605 0.1745 5.9239 39 1 -0.6773 -0.0039 4.2842 40 1 -0.1093 -1.2540 5.4169 41 1 -0.0192 0.4324 7.2326 42 1 -0.5872 1.6824 6.0998 43 1 -4.5014 0.8868 8.5808 44 1 0.0727 -1.1375 -1.9694 45 1 0.8926 -2.2973 -3.9798 46 1 3.3128 -2.5232 -4.3719 47 1 4.9152 -1.5885 -2.7535 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424116625.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:05 Heat of formation + Delta-G solvation = -74.887713 kcal Electronic energy + Delta-G solvation = -27304.390272 eV Core-core repulsion = 23400.714004 eV Total energy + Delta-G solvation = -3903.676268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.26800 -40.34369 -39.49443 -37.20077 -35.28246 -33.63098 -32.74176 -31.05227 -30.47612 -30.07495 -27.77155 -27.61802 -26.06669 -23.87550 -22.78647 -22.75152 -20.49900 -19.97203 -19.74836 -18.00045 -17.30957 -16.84567 -16.62722 -16.22888 -16.02230 -15.78885 -15.51021 -15.02228 -14.54524 -14.48314 -14.40966 -14.10380 -13.78348 -13.68060 -13.51396 -13.35437 -12.74573 -12.60683 -12.56887 -12.37189 -12.28900 -12.11416 -11.90801 -11.63017 -11.35951 -11.23494 -11.01330 -10.91653 -10.85591 -10.36974 -9.90746 -9.76376 -9.56214 -9.37509 -9.09761 -9.04973 -9.01548 -8.49305 -8.36870 -5.98625 -3.96109 0.75573 0.81208 2.76196 3.12555 3.29947 3.36626 3.44648 3.53017 3.88887 4.12367 4.25226 4.46450 4.51634 4.52460 4.63821 4.79936 4.81111 4.86318 4.97125 5.05304 5.28928 5.35916 5.37945 5.41173 5.44740 5.46482 5.56081 5.58363 5.65016 5.70701 5.71262 5.77471 5.89357 5.90950 6.03088 6.05641 6.30529 6.41545 6.49555 6.50529 6.88833 7.27811 7.37733 7.54188 7.61851 7.69395 7.87850 8.29836 8.59016 9.06158 9.64536 11.14863 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021543 B = 0.002564 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.403413 B =10919.392094 C =11555.920923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.034 4.034 3 C -0.147 4.147 4 C 0.127 3.873 5 N -0.726 5.726 6 C 0.483 3.517 7 O -0.552 6.552 8 C 0.075 3.925 9 H 0.097 0.903 10 N -0.811 5.811 11 C -0.087 4.087 12 C -0.005 4.005 13 C -0.520 4.520 14 H 0.069 0.931 15 C 0.065 3.935 16 N -0.907 5.907 17 Si 0.879 3.121 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.260 1.260 21 C -0.102 4.102 22 C -0.089 4.089 23 C -0.129 4.129 24 C -0.095 4.095 25 C -0.154 4.154 26 C 0.104 3.896 27 F -0.134 7.134 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.402 0.598 37 H 0.350 0.650 38 H 0.335 0.665 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.034 0.966 42 H 0.008 0.992 43 H 0.262 0.738 44 H 0.139 0.861 45 H 0.130 0.870 46 H 0.131 0.869 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.595 -0.593 -25.272 29.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.034 4.034 3 C -0.204 4.204 4 C 0.003 3.997 5 N -0.380 5.380 6 C 0.269 3.731 7 O -0.430 6.430 8 C -0.041 4.041 9 H 0.115 0.885 10 N -0.339 5.339 11 C -0.125 4.125 12 C -0.042 4.042 13 C -0.558 4.558 14 H 0.087 0.913 15 C -0.135 4.135 16 N -0.546 5.546 17 Si 0.707 3.293 18 H -0.205 1.205 19 H -0.216 1.216 20 H -0.184 1.184 21 C -0.104 4.104 22 C -0.107 4.107 23 C -0.147 4.147 24 C -0.113 4.113 25 C -0.173 4.173 26 C 0.085 3.915 27 F -0.112 7.112 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.237 0.763 37 H 0.164 0.836 38 H 0.147 0.853 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.052 0.948 42 H 0.026 0.974 43 H 0.071 0.929 44 H 0.157 0.843 45 H 0.148 0.852 46 H 0.149 0.851 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 14.494 -0.791 -24.579 28.545 hybrid contribution 0.749 0.512 -0.173 0.924 sum 15.243 -0.280 -24.752 29.071 Atomic orbital electron populations 1.22014 0.92759 1.02888 1.02833 1.19683 0.96873 0.95567 0.91271 1.21974 1.02227 0.93777 1.02464 1.21392 0.99647 0.95913 0.82783 1.46164 1.54013 1.32331 1.05484 1.22609 0.79567 0.85062 0.85900 1.90656 1.38647 1.26617 1.87037 1.21854 0.97055 0.99753 0.85422 0.88504 1.59040 1.14562 1.22223 1.38051 1.21461 0.89021 1.01272 1.00745 1.19489 0.96408 0.94269 0.94030 1.21181 0.95691 1.22517 1.16457 0.91325 1.25016 0.94658 0.96819 0.97047 1.69922 1.09538 1.43282 1.31871 0.86774 0.80778 0.82129 0.79666 1.20533 1.21628 1.18389 1.19775 0.91534 1.01322 0.97745 1.21156 1.00199 0.96213 0.93101 1.21248 0.95765 0.99781 0.97911 1.21035 0.93003 0.98528 0.98764 1.21165 1.01235 1.00600 0.94281 1.17578 0.86563 0.98260 0.89132 1.91475 1.68336 1.84463 1.66942 0.91364 0.91645 0.91631 0.91539 0.91986 0.91651 0.90901 0.91527 0.76258 0.83623 0.85340 0.92264 0.92218 0.94776 0.97372 0.92859 0.84315 0.85236 0.85088 0.84764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 6.96 37.16 0.26 -0.93 16 2 C -0.03 -0.30 0.51 -155.66 -0.08 -0.38 16 3 C -0.15 -1.24 8.09 37.16 0.30 -0.94 16 4 C 0.13 1.49 4.36 -4.04 -0.02 1.47 16 5 N -0.73 -8.94 4.96 -60.29 -0.30 -9.24 16 6 C 0.48 7.48 7.07 -10.99 -0.08 7.40 16 7 O -0.55 -10.25 16.25 5.56 0.09 -10.16 16 8 C 0.07 1.19 3.15 -68.86 -0.22 0.98 16 9 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 10 N -0.81 -13.00 8.44 -5.65 -0.05 -13.04 16 11 C -0.09 -1.67 4.78 -26.73 -0.13 -1.80 16 12 C 0.00 -0.11 3.93 -27.88 -0.11 -0.22 16 13 C -0.52 -14.83 9.66 -34.44 -0.33 -15.16 16 14 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 15 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 16 N -0.91 -28.19 13.96 55.43 0.77 -27.42 16 17 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 21 C -0.10 -0.92 4.76 -104.56 -0.50 -1.42 16 22 C -0.09 -0.66 8.97 -39.59 -0.36 -1.02 16 23 C -0.13 -0.82 10.04 -39.58 -0.40 -1.22 16 24 C -0.10 -0.61 10.04 -39.59 -0.40 -1.00 16 25 C -0.15 -1.20 10.03 -39.51 -0.40 -1.60 16 26 C 0.10 1.00 6.79 -39.42 -0.27 0.73 16 27 F -0.13 -1.47 13.38 2.25 0.03 -1.44 16 28 H 0.07 0.57 6.86 -51.93 -0.36 0.21 16 29 H 0.06 0.43 7.51 -51.93 -0.39 0.04 16 30 H 0.06 0.54 7.51 -51.93 -0.39 0.15 16 31 H 0.07 0.62 6.29 -51.93 -0.33 0.30 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.52 6.86 -51.93 -0.36 0.16 16 34 H 0.07 0.96 6.33 -51.93 -0.33 0.63 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.40 4.15 6.16 -40.82 -0.25 3.90 16 37 H 0.35 5.76 8.58 -39.29 -0.34 5.43 16 38 H 0.33 4.66 9.06 -39.29 -0.36 4.30 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.03 0.84 6.81 -51.93 -0.35 0.48 16 42 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 43 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.14 0.84 5.90 -52.49 -0.31 0.53 16 45 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 46 H 0.13 0.52 8.06 -52.48 -0.42 0.09 16 47 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 376.45 15.07 5.67 5.67 Total: -1.00 -33.95 376.45 -8.38 -42.33 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -7.12 Total: 9.27 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -2.81 Total: -13.28 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 0.43 Total: -49.70 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.03 Total: -1.44 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.95 -8.38 -42.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424116625.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.561 kcal (2) G-P(sol) polarization free energy of solvation -33.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds