Wall clock time and date at job start Sat Apr 11 2020 00:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 5 5 N 1.46505 * 109.47212 * 300.00138 * 4 2 1 6 6 C 1.34771 * 119.99622 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00597 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99622 * 179.97438 * 6 5 4 9 9 H 1.09001 * 109.47273 * 320.00628 * 8 6 5 10 10 N 1.46898 * 109.47332 * 200.00286 * 8 6 5 11 11 C 1.53001 * 109.47184 * 80.00611 * 8 6 5 12 12 C 1.52997 * 109.47226 * 185.00106 * 11 8 6 13 13 C 1.50706 * 109.47103 * 179.97438 * 12 11 8 14 14 H 1.07997 * 119.99702 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99943 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99948 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 120.00138 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47321 * 89.99581 * 17 15 13 19 19 H 1.48501 * 109.47210 * 209.99894 * 17 15 13 20 20 H 1.48506 * 109.46961 * 329.99571 * 17 15 13 21 21 C 1.50697 * 109.47239 * 240.00432 * 2 1 3 22 22 C 1.38220 * 120.01471 * 359.97438 * 21 2 1 23 23 C 1.38225 * 120.02755 * 179.97438 * 22 21 2 24 24 C 1.38265 * 120.04998 * 0.03051 * 23 22 21 25 25 C 1.38176 * 120.02622 * 359.97438 * 24 23 22 26 26 C 1.38439 * 120.01324 * 179.72266 * 21 2 1 27 27 F 1.35099 * 120.02572 * 359.97438 * 26 21 2 28 28 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 29 29 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 33 33 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 34 34 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 36 36 H 0.96996 * 119.99606 * 0.02562 * 5 4 2 37 37 H 1.00898 * 111.00035 * 300.00646 * 10 8 6 38 38 H 1.00906 * 111.00264 * 63.95556 * 10 8 6 39 39 H 1.09003 * 109.47078 * 304.99846 * 11 8 6 40 40 H 1.09000 * 109.47480 * 64.99693 * 11 8 6 41 41 H 1.08998 * 109.47180 * 299.99521 * 12 11 8 42 42 H 1.09000 * 109.47435 * 59.99944 * 12 11 8 43 43 H 0.96996 * 120.00175 * 180.02562 * 16 15 13 44 44 H 1.08002 * 119.98661 * 0.02562 * 22 21 2 45 45 H 1.08000 * 119.97187 * 180.02562 * 23 22 21 46 46 H 1.08003 * 119.98577 * 179.97438 * 24 23 22 47 47 H 1.07999 * 120.01421 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.5517 -0.0306 2.4454 6 6 1.8769 -0.4914 3.6695 7 8 2.5742 -1.4775 3.7808 8 6 1.3750 0.2193 4.8999 9 1 1.4229 1.2968 4.7421 10 7 2.2117 -0.1446 6.0512 11 6 -0.0732 -0.1925 5.1717 12 6 -0.6232 0.6210 6.3450 13 6 -2.0499 0.2158 6.6123 14 1 -2.5174 -0.5461 6.0062 15 6 -2.7579 0.8169 7.6313 16 7 -4.0031 0.4637 7.8642 17 14 -1.9490 2.1341 8.6801 18 1 -2.1813 3.4667 8.0673 19 1 -2.5334 2.1082 10.0450 20 1 -0.4891 1.8745 8.7617 21 6 2.0324 -0.7103 -1.2305 22 6 1.1345 -1.2361 -2.1403 23 6 1.5950 -1.8872 -3.2693 24 6 2.9541 -2.0139 -3.4896 25 6 3.8536 -1.4891 -2.5814 26 6 3.3934 -0.8319 -1.4527 27 9 4.2720 -0.3135 -0.5670 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 -0.7208 1.2495 35 1 1.6767 -1.7489 1.2492 36 1 0.9937 0.7578 2.3564 37 1 2.1842 -1.1393 6.2182 38 1 3.1605 0.1745 5.9239 39 1 -0.6773 -0.0039 4.2842 40 1 -0.1093 -1.2540 5.4169 41 1 -0.0192 0.4324 7.2326 42 1 -0.5872 1.6824 6.0998 43 1 -4.5014 0.8868 8.5808 44 1 0.0727 -1.1375 -1.9694 45 1 0.8926 -2.2973 -3.9798 46 1 3.3128 -2.5232 -4.3719 47 1 4.9152 -1.5885 -2.7535 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424116625.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:04 Heat of formation + Delta-G solvation = -97.825121 kcal Electronic energy + Delta-G solvation = -27305.384913 eV Core-core repulsion = 23400.714004 eV Total energy + Delta-G solvation = -3904.670909 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.99513 -41.32439 -40.36913 -38.01130 -36.80065 -34.78022 -34.62509 -32.27923 -31.61706 -30.69842 -28.92281 -28.38876 -27.46914 -25.11380 -23.80451 -23.33430 -22.13064 -21.28719 -20.52767 -19.05617 -18.61677 -18.18705 -17.66782 -17.18040 -16.96348 -16.66739 -16.48718 -16.22016 -16.05386 -15.56366 -15.17927 -15.06179 -14.93947 -14.73477 -14.64611 -14.45336 -14.20413 -14.00904 -13.48615 -13.36083 -13.16334 -12.94692 -12.82377 -12.79270 -12.54788 -12.47703 -12.07130 -12.00708 -11.91921 -11.74032 -11.59213 -11.56547 -11.29966 -11.12668 -10.69679 -10.17527 -9.94585 -9.70737 -9.58867 -8.23770 -6.26778 0.17320 0.25473 1.40622 1.44459 1.49636 1.58459 2.13932 2.42763 2.64128 3.12888 3.28801 3.44255 3.55492 3.58363 3.73297 3.86930 3.91629 4.07721 4.08714 4.16389 4.26724 4.36993 4.40066 4.57636 4.58433 4.71820 4.73175 4.79392 4.85407 4.87511 4.91018 5.01182 5.09861 5.14902 5.16307 5.24139 5.32908 5.34517 5.43594 5.49855 5.51162 5.66704 5.75229 5.95177 6.05563 6.33873 6.41735 6.51340 6.81780 7.12263 7.37721 8.93058 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021543 B = 0.002564 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.403413 B =10919.392094 C =11555.920923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.025 4.025 3 C -0.145 4.145 4 C 0.131 3.869 5 N -0.710 5.710 6 C 0.485 3.515 7 O -0.585 6.585 8 C 0.085 3.915 9 H 0.122 0.878 10 N -0.818 5.818 11 C -0.078 4.078 12 C 0.002 3.998 13 C -0.530 4.530 14 H 0.029 0.971 15 C 0.002 3.998 16 N -0.955 5.955 17 Si 0.951 3.049 18 H -0.264 1.264 19 H -0.290 1.290 20 H -0.245 1.245 21 C -0.117 4.117 22 C -0.095 4.095 23 C -0.127 4.127 24 C -0.093 4.093 25 C -0.163 4.163 26 C 0.076 3.924 27 F -0.149 7.149 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.414 0.586 37 H 0.345 0.655 38 H 0.348 0.652 39 H 0.068 0.932 40 H 0.039 0.961 41 H 0.028 0.972 42 H 0.023 0.977 43 H 0.264 0.736 44 H 0.153 0.847 45 H 0.156 0.844 46 H 0.159 0.841 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.406 0.815 -26.811 30.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.025 4.025 3 C -0.202 4.202 4 C 0.007 3.993 5 N -0.363 5.363 6 C 0.270 3.730 7 O -0.466 6.466 8 C -0.031 4.031 9 H 0.140 0.860 10 N -0.347 5.347 11 C -0.117 4.117 12 C -0.035 4.035 13 C -0.568 4.568 14 H 0.047 0.953 15 C -0.194 4.194 16 N -0.596 5.596 17 Si 0.775 3.225 18 H -0.189 1.189 19 H -0.216 1.216 20 H -0.169 1.169 21 C -0.118 4.118 22 C -0.113 4.113 23 C -0.145 4.145 24 C -0.111 4.111 25 C -0.182 4.182 26 C 0.057 3.943 27 F -0.128 7.128 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.252 0.748 37 H 0.159 0.841 38 H 0.161 0.839 39 H 0.086 0.914 40 H 0.057 0.943 41 H 0.047 0.953 42 H 0.042 0.958 43 H 0.073 0.927 44 H 0.170 0.830 45 H 0.174 0.826 46 H 0.176 0.824 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 15.311 0.644 -26.159 30.317 hybrid contribution 0.451 -0.035 0.193 0.492 sum 15.762 0.608 -25.966 30.382 Atomic orbital electron populations 1.22029 0.91794 1.02985 1.03631 1.19594 0.97470 0.95524 0.89949 1.21961 1.01455 0.93515 1.03306 1.21364 0.98719 0.95496 0.83747 1.46047 1.53087 1.32293 1.04880 1.22480 0.79331 0.84515 0.86629 1.90647 1.40373 1.28031 1.87526 1.21691 0.94738 1.01009 0.85653 0.86046 1.59040 1.15580 1.22003 1.38059 1.21258 0.91512 0.99372 0.99521 1.19374 0.93202 0.95543 0.95406 1.21556 0.98109 1.21329 1.15775 0.95286 1.26003 0.95166 0.99561 0.98657 1.70079 1.11405 1.45164 1.32975 0.85638 0.80204 0.79256 0.77438 1.18854 1.21632 1.16868 1.19848 0.91616 1.02203 0.98139 1.21402 1.00692 0.96002 0.93182 1.21621 0.96357 0.98744 0.97783 1.21407 0.92905 0.97702 0.99087 1.21423 1.02289 1.00414 0.94044 1.17923 0.86853 0.99689 0.89878 1.91429 1.68846 1.84909 1.67614 0.91653 0.89749 0.91902 0.92780 0.90822 0.91068 0.92459 0.93188 0.74829 0.84125 0.83868 0.91377 0.94254 0.95350 0.95832 0.92684 0.82960 0.82624 0.82369 0.83764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 6.96 71.98 0.50 -1.63 16 2 C -0.02 -0.43 0.51 -52.93 -0.03 -0.46 16 3 C -0.15 -2.29 8.09 71.98 0.58 -1.71 16 4 C 0.13 3.09 4.36 86.38 0.38 3.46 16 5 N -0.71 -16.87 4.96 -463.06 -2.30 -19.16 16 6 C 0.49 14.67 7.07 87.66 0.62 15.29 16 7 O -0.59 -21.80 16.25 -3.03 -0.05 -21.85 16 8 C 0.08 2.56 3.15 44.17 0.14 2.70 16 9 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 10 N -0.82 -25.09 8.44 -171.80 -1.45 -26.54 16 11 C -0.08 -2.96 4.78 30.59 0.15 -2.82 16 12 C 0.00 0.10 3.93 29.85 0.12 0.22 16 13 C -0.53 -30.53 9.66 25.60 0.25 -30.28 16 14 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 15 C 0.00 0.13 5.47 84.65 0.46 0.60 16 16 N -0.96 -60.47 13.96 21.45 0.30 -60.17 16 17 Si 0.95 44.71 27.47 68.60 1.88 46.59 16 18 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 20 H -0.25 -10.89 6.54 99.48 0.65 -10.23 16 21 C -0.12 -2.01 4.76 -19.82 -0.09 -2.10 16 22 C -0.10 -1.25 8.97 22.26 0.20 -1.05 16 23 C -0.13 -1.30 10.04 22.27 0.22 -1.08 16 24 C -0.09 -0.98 10.04 22.26 0.22 -0.76 16 25 C -0.16 -2.40 10.03 22.31 0.22 -2.17 16 26 C 0.08 1.45 6.79 22.38 0.15 1.60 16 27 F -0.15 -3.40 13.38 44.97 0.60 -2.80 16 28 H 0.06 0.98 6.86 -2.39 -0.02 0.96 16 29 H 0.08 0.91 7.51 -2.39 -0.02 0.89 16 30 H 0.06 0.95 7.51 -2.39 -0.02 0.93 16 31 H 0.05 1.00 6.29 -2.39 -0.02 0.98 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 1.00 6.86 -2.39 -0.02 0.99 16 34 H 0.06 1.56 6.33 -2.39 -0.02 1.54 16 35 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.41 7.83 6.16 -92.71 -0.57 7.26 16 37 H 0.35 11.22 8.58 -89.70 -0.77 10.45 16 38 H 0.35 9.11 9.06 -89.69 -0.81 8.29 16 39 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.03 1.34 6.81 -2.39 -0.02 1.32 16 42 H 0.02 1.01 7.57 -2.39 -0.02 1.00 16 43 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 44 H 0.15 1.49 5.90 -2.91 -0.02 1.47 16 45 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 46 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 47 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -74.76 376.45 1.88 -72.87 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: -1.20 Total: 31.23 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: 4.09 Total: -20.19 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -3.45 Total: -105.87 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.05 Total: -21.85 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.60 Total: -2.80 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.88 Total: 46.59 kcal Total: -74.76 1.88 -72.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424116625.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.952 kcal (2) G-P(sol) polarization free energy of solvation -74.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds