Wall clock time and date at job start Sat Apr 11 2020 00:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47515 * 2 1 4 4 C 1.53001 * 109.46702 * 240.00228 * 2 1 3 5 5 N 1.46495 * 109.47432 * 60.00313 * 4 2 1 6 6 C 1.34770 * 120.00137 * 180.02562 * 5 4 2 7 7 O 1.21279 * 120.00424 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.99987 * 179.97438 * 6 5 4 9 9 H 1.08994 * 109.47260 * 319.99734 * 8 6 5 10 10 N 1.46905 * 109.46931 * 199.99583 * 8 6 5 11 11 C 1.53001 * 109.47025 * 80.00040 * 8 6 5 12 12 C 1.53000 * 109.46974 * 185.00253 * 11 8 6 13 13 C 1.50699 * 109.47459 * 179.97438 * 12 11 8 14 14 H 1.08001 * 119.99408 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00450 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99815 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00027 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47560 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47148 * 120.00070 * 17 15 13 20 20 H 1.48495 * 109.47256 * 240.00134 * 17 15 13 21 21 C 1.50695 * 109.47059 * 120.00334 * 2 1 3 22 22 C 1.38266 * 119.98923 * 119.95403 * 21 2 1 23 23 C 1.38226 * 120.05404 * 180.02562 * 22 21 2 24 24 C 1.38217 * 120.02522 * 0.03782 * 23 22 21 25 25 C 1.38434 * 119.97400 * 359.97438 * 24 23 22 26 26 F 1.35099 * 120.02897 * 180.02562 * 25 24 23 27 27 C 1.38176 * 119.98906 * 299.99905 * 21 2 1 28 28 H 1.09004 * 109.46656 * 299.99750 * 1 2 3 29 29 H 1.09001 * 109.46959 * 59.99208 * 1 2 3 30 30 H 1.08993 * 109.47130 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47474 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47196 * 300.00641 * 3 2 1 33 33 H 1.09004 * 109.46497 * 60.00158 * 3 2 1 34 34 H 1.09004 * 109.47186 * 180.02562 * 4 2 1 35 35 H 1.09005 * 109.47039 * 299.99769 * 4 2 1 36 36 H 0.97000 * 119.99822 * 359.97438 * 5 4 2 37 37 H 1.00897 * 110.99771 * 176.04718 * 10 8 6 38 38 H 1.00898 * 111.00434 * 300.00159 * 10 8 6 39 39 H 1.08994 * 109.46856 * 304.99426 * 11 8 6 40 40 H 1.08997 * 109.47599 * 64.99903 * 11 8 6 41 41 H 1.09002 * 109.47070 * 299.99789 * 12 11 8 42 42 H 1.08997 * 109.47243 * 59.99432 * 12 11 8 43 43 H 0.96995 * 120.00112 * 179.97438 * 16 15 13 44 44 H 1.08008 * 119.97418 * 0.04219 * 22 21 2 45 45 H 1.07998 * 119.98497 * 180.02562 * 23 22 21 46 46 H 1.08003 * 120.01075 * 180.02562 * 24 23 22 47 47 H 1.07996 * 120.01219 * 0.24814 * 27 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.5517 -0.0306 -2.4454 6 6 1.8768 -0.4913 -3.6695 7 8 2.5739 -1.4774 -3.7809 8 6 1.3740 0.2189 -4.9000 9 1 0.3425 0.5336 -4.7418 10 7 1.4371 -0.6917 -6.0510 11 6 2.2458 1.4464 -5.1723 12 6 1.6621 2.2361 -6.3456 13 6 2.5204 3.4455 -6.6136 14 1 3.3949 3.6319 -6.0079 15 6 2.1898 4.3135 -7.6326 16 7 1.1251 4.0862 -8.3705 17 14 3.2533 5.8129 -7.9642 18 1 4.3833 5.8411 -7.0012 19 1 3.7854 5.7459 -9.3491 20 1 2.4371 7.0433 -7.8065 21 6 2.0323 -0.7105 1.2304 22 6 2.8264 -1.8352 1.1032 23 6 3.2875 -2.4882 2.2309 24 6 2.9544 -2.0179 3.4872 25 6 2.1592 -0.8920 3.6158 26 9 1.8334 -0.4311 4.8432 27 6 1.6984 -0.2382 2.4853 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6768 1.9562 0.8901 34 1 3.1300 -0.7217 -1.2492 35 1 1.6766 -1.7489 -1.2493 36 1 0.9938 0.7579 -2.3564 37 1 1.0456 -0.2606 -6.8750 38 1 2.3838 -0.9980 -6.2184 39 1 2.2700 2.0788 -4.2850 40 1 3.2582 1.1258 -5.4179 41 1 1.6377 1.6037 -7.2330 42 1 0.6497 2.5567 -6.1000 43 1 0.8923 4.6969 -9.0871 44 1 3.0870 -2.2036 0.1219 45 1 3.9080 -3.3663 2.1303 46 1 3.3151 -2.5281 4.3681 47 1 1.0742 0.6375 2.5844 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424132289.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:09 Heat of formation + Delta-G solvation = -101.748136 kcal Electronic energy + Delta-G solvation = -26793.735850 eV Core-core repulsion = 22888.894827 eV Total energy + Delta-G solvation = -3904.841023 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.90121 -41.36662 -40.40140 -37.82001 -36.94720 -34.82146 -34.49314 -31.70252 -31.66243 -30.80250 -28.79398 -28.19887 -27.29469 -25.44844 -24.03507 -23.32225 -22.34160 -21.20458 -20.45649 -19.01852 -18.31942 -17.85827 -17.61244 -17.09435 -16.67296 -16.60998 -16.45947 -16.29892 -16.02362 -15.51762 -15.25389 -15.07073 -14.84649 -14.61659 -14.56420 -14.36356 -14.09914 -13.98444 -13.65556 -13.41928 -12.97626 -12.92049 -12.88971 -12.78967 -12.71046 -12.64307 -12.48854 -12.04094 -11.81440 -11.77246 -11.70377 -11.55944 -11.27177 -10.73039 -10.55605 -10.09712 -9.89630 -9.65741 -9.61802 -8.20803 -6.30680 0.16925 0.24678 1.38928 1.40927 1.52262 1.65146 2.13793 2.40581 2.60217 3.13103 3.21239 3.47402 3.61227 3.78079 3.84775 3.91195 3.99408 4.08661 4.13931 4.15935 4.21332 4.28107 4.43431 4.63627 4.65974 4.69816 4.77881 4.79192 4.86560 4.93251 4.94026 5.05368 5.09355 5.11207 5.15078 5.27148 5.33926 5.35026 5.48202 5.49143 5.54122 5.67704 5.82304 5.92673 6.09671 6.22623 6.49623 6.54679 6.85306 7.25864 7.38451 8.90112 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018463 B = 0.002336 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.178632 B =11982.074323 C =12804.519345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.026 4.026 3 C -0.144 4.144 4 C 0.131 3.869 5 N -0.715 5.715 6 C 0.527 3.473 7 O -0.571 6.571 8 C 0.080 3.920 9 H 0.109 0.891 10 N -0.831 5.831 11 C -0.120 4.120 12 C 0.029 3.971 13 C -0.542 4.542 14 H 0.055 0.945 15 C 0.005 3.995 16 N -0.927 5.927 17 Si 0.958 3.042 18 H -0.266 1.266 19 H -0.281 1.281 20 H -0.277 1.277 21 C -0.042 4.042 22 C -0.141 4.141 23 C -0.086 4.086 24 C -0.162 4.162 25 C 0.080 3.920 26 F -0.150 7.150 27 C -0.149 4.149 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.411 0.589 37 H 0.352 0.648 38 H 0.343 0.657 39 H 0.067 0.933 40 H 0.043 0.957 41 H 0.002 0.998 42 H 0.003 0.997 43 H 0.263 0.737 44 H 0.136 0.864 45 H 0.155 0.845 46 H 0.149 0.851 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.064 -10.058 23.946 25.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.026 4.026 3 C -0.201 4.201 4 C 0.008 3.992 5 N -0.369 5.369 6 C 0.314 3.686 7 O -0.450 6.450 8 C -0.035 4.035 9 H 0.127 0.873 10 N -0.362 5.362 11 C -0.160 4.160 12 C -0.008 4.008 13 C -0.580 4.580 14 H 0.073 0.927 15 C -0.194 4.194 16 N -0.567 5.567 17 Si 0.783 3.217 18 H -0.190 1.190 19 H -0.207 1.207 20 H -0.203 1.203 21 C -0.043 4.043 22 C -0.159 4.159 23 C -0.104 4.104 24 C -0.180 4.180 25 C 0.061 3.939 26 F -0.129 7.129 27 C -0.168 4.168 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.249 0.751 37 H 0.167 0.833 38 H 0.156 0.844 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.020 0.980 42 H 0.021 0.979 43 H 0.072 0.928 44 H 0.154 0.846 45 H 0.173 0.827 46 H 0.167 0.833 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.163 -11.159 24.220 26.667 hybrid contribution 0.747 1.984 -0.676 2.226 sum 0.584 -9.174 23.544 25.275 Atomic orbital electron populations 1.21952 0.91853 1.02810 1.03330 1.19632 0.97126 0.95636 0.90205 1.21963 1.01425 0.93464 1.03280 1.21487 0.98850 0.95958 0.82951 1.45900 1.53874 1.32388 1.04722 1.20664 0.79254 0.83520 0.85171 1.90621 1.39321 1.27734 1.87324 1.21423 1.01164 0.90961 0.89989 0.87271 1.58761 1.27366 1.42095 1.07953 1.22125 0.98100 0.95616 1.00167 1.18976 0.95258 0.93786 0.92770 1.21646 1.11180 1.09318 1.15828 0.92723 1.25854 0.96478 1.01146 0.95895 1.70063 1.26988 1.38722 1.20907 0.85507 0.78950 0.79219 0.78030 1.18973 1.20685 1.20300 1.19511 0.96414 0.95037 0.93289 1.21496 0.98376 0.95819 1.00176 1.21297 0.98322 0.99957 0.90778 1.21405 1.00042 0.96433 1.00134 1.17907 1.00109 0.96147 0.79716 1.91479 1.91348 1.88551 1.41486 1.21015 1.03021 1.02052 0.90707 0.90742 0.91263 0.92288 0.92672 0.91441 0.90687 0.91908 0.91450 0.75077 0.83307 0.84360 0.91424 0.93801 0.98000 0.97876 0.92774 0.84599 0.82696 0.83280 0.83724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.11 71.98 0.58 -1.26 16 2 C -0.03 -0.38 0.61 -52.93 -0.03 -0.41 16 3 C -0.14 -2.09 8.11 71.98 0.58 -1.50 16 4 C 0.13 2.56 3.22 86.38 0.28 2.84 16 5 N -0.72 -16.02 4.96 -463.06 -2.30 -18.32 16 6 C 0.53 16.16 7.08 87.66 0.62 16.78 16 7 O -0.57 -21.25 16.25 -3.03 -0.05 -21.29 16 8 C 0.08 2.57 3.21 44.17 0.14 2.71 16 9 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 10 N -0.83 -27.94 8.94 -171.79 -1.54 -29.48 16 11 C -0.12 -4.51 4.78 30.59 0.15 -4.37 16 12 C 0.03 1.40 4.74 29.85 0.14 1.54 16 13 C -0.54 -29.23 9.11 25.60 0.23 -29.00 16 14 H 0.05 2.89 7.74 -2.91 -0.02 2.86 16 15 C 0.00 0.26 5.46 84.65 0.46 0.72 16 16 N -0.93 -53.75 13.29 21.45 0.28 -53.47 16 17 Si 0.96 42.91 29.54 68.60 2.03 44.93 16 18 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 21 C -0.04 -0.64 4.76 -19.87 -0.09 -0.74 16 22 C -0.14 -2.14 8.97 22.27 0.20 -1.94 16 23 C -0.09 -1.11 10.04 22.26 0.22 -0.89 16 24 C -0.16 -2.26 10.03 22.31 0.22 -2.04 16 25 C 0.08 1.35 7.30 22.38 0.16 1.51 16 26 F -0.15 -2.83 17.27 44.97 0.78 -2.06 16 27 C -0.15 -2.30 8.69 22.31 0.19 -2.11 16 28 H 0.07 0.80 7.38 -2.39 -0.02 0.79 16 29 H 0.07 0.85 6.86 -2.39 -0.02 0.84 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 0.98 6.86 -2.39 -0.02 0.96 16 33 H 0.07 0.91 7.39 -2.39 -0.02 0.89 16 34 H 0.06 1.36 7.51 -2.38 -0.02 1.34 16 35 H 0.07 1.40 7.51 -2.38 -0.02 1.38 16 36 H 0.41 7.54 6.16 -92.71 -0.57 6.97 16 37 H 0.35 12.04 7.55 -89.70 -0.68 11.36 16 38 H 0.34 11.84 8.58 -89.70 -0.77 11.07 16 39 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.00 0.09 6.87 -2.39 -0.02 0.07 16 42 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 43 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 44 H 0.14 2.04 5.89 -2.91 -0.02 2.02 16 45 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 46 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 47 H 0.15 1.85 7.10 -2.91 -0.02 1.83 16 Total: -1.00 -66.13 382.48 2.26 -63.87 By element: Atomic # 1 Polarization: 34.99 SS G_CDS: -1.01 Total: 33.98 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: 4.07 Total: -18.16 kcal Atomic # 7 Polarization: -97.72 SS G_CDS: -3.55 Total: -101.27 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.05 Total: -21.29 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.78 Total: -2.06 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -66.13 2.26 -63.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424132289.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.881 kcal (2) G-P(sol) polarization free energy of solvation -66.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds