Wall clock time and date at job start Sat Apr 11 2020 00:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47274 * 2 1 4 4 C 1.52998 * 109.47066 * 119.99792 * 2 1 3 5 5 H 1.09001 * 109.47254 * 52.24064 * 4 2 1 6 6 C 1.50701 * 109.47270 * 292.24048 * 4 2 1 7 7 C 1.38249 * 119.97330 * 274.89855 * 6 4 2 8 8 C 1.38195 * 120.02482 * 179.72059 * 7 6 4 9 9 C 1.38462 * 119.97375 * 0.52993 * 8 7 6 10 10 F 1.35104 * 120.02727 * 179.71907 * 9 8 7 11 11 C 1.38463 * 119.95027 * 359.74732 * 9 8 7 12 12 C 1.38199 * 119.97206 * 359.97438 * 11 9 8 13 13 N 1.46501 * 109.47459 * 172.23675 * 4 2 1 14 14 C 1.46501 * 119.99787 * 2.49259 * 13 4 2 15 15 C 1.34780 * 120.00027 * 182.48704 * 13 4 2 16 16 O 1.21581 * 120.00067 * 359.97438 * 15 13 4 17 17 N 1.34775 * 119.99880 * 180.02562 * 15 13 4 18 18 C 1.46497 * 119.99980 * 180.02562 * 17 15 13 19 19 C 1.53007 * 109.46837 * 180.02562 * 18 17 15 20 20 C 1.50704 * 109.46845 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00053 * 0.02562 * 20 19 18 22 22 C 1.37874 * 120.00007 * 179.97438 * 20 19 18 23 23 N 1.31519 * 120.00122 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00033 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46928 * 60.00030 * 24 22 20 26 26 H 1.48495 * 109.46914 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46917 * 300.00147 * 24 22 20 28 28 H 1.09008 * 109.46962 * 60.00079 * 1 2 3 29 29 H 1.08998 * 109.47148 * 300.00262 * 1 2 3 30 30 H 1.08996 * 109.46918 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47438 * 239.99908 * 2 1 3 32 32 H 1.08996 * 109.47146 * 53.85394 * 3 2 1 33 33 H 1.09002 * 109.47266 * 173.85770 * 3 2 1 34 34 H 1.08997 * 109.47088 * 293.85260 * 3 2 1 35 35 H 1.08003 * 119.98799 * 359.97438 * 7 6 4 36 36 H 1.08001 * 120.01644 * 180.29797 * 8 7 6 37 37 H 1.07997 * 120.01322 * 179.97438 * 11 9 8 38 38 H 1.08001 * 119.98597 * 180.02562 * 12 11 9 39 39 H 1.08997 * 109.47226 * 92.88992 * 14 13 4 40 40 H 1.08998 * 109.47001 * 212.89129 * 14 13 4 41 41 H 1.08996 * 109.47058 * 332.89156 * 14 13 4 42 42 H 0.97010 * 119.99970 * 359.97438 * 17 15 13 43 43 H 1.09004 * 109.46904 * 299.99378 * 18 17 15 44 44 H 1.08992 * 109.47224 * 60.00118 * 18 17 15 45 45 H 1.09004 * 109.46781 * 299.99349 * 19 18 17 46 46 H 1.08995 * 109.47647 * 59.99755 * 19 18 17 47 47 H 0.96994 * 119.99838 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.5678 -1.7010 1.3214 6 6 1.7004 0.0913 2.4722 7 6 2.5417 1.1095 2.8804 8 6 2.2284 1.8590 3.9984 9 6 1.0770 1.5828 4.7161 10 9 0.7726 2.3112 5.8125 11 6 0.2380 0.5590 4.3096 12 6 0.5505 -0.1854 3.1879 13 7 3.4930 -0.8849 1.1597 14 6 4.2230 -0.3345 0.0149 15 6 4.1583 -1.5418 2.1306 16 8 3.5525 -1.9981 3.0809 17 7 5.4951 -1.6920 2.0484 18 6 6.2181 -2.4064 3.1033 19 6 7.7111 -2.4340 2.7696 20 6 8.4550 -3.1684 3.8552 21 1 7.9167 -3.5752 4.6985 22 6 9.8226 -3.3220 3.7712 23 7 10.4780 -2.8270 2.7440 24 14 10.7447 -4.2317 5.1171 25 1 10.2329 -5.6222 5.2148 26 1 12.1936 -4.2585 4.7932 27 1 10.5406 -3.5368 6.4136 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.5897 1.9871 0.8298 33 1 3.1245 1.4445 0.1100 34 1 1.7693 1.9236 -0.9399 35 1 3.4421 1.3219 2.3231 36 1 2.8834 2.6576 4.3144 37 1 -0.6601 0.3424 4.8688 38 1 -0.1040 -0.9838 2.8704 39 1 4.5792 0.6664 0.2583 40 1 5.0730 -0.9764 -0.2166 41 1 3.5599 -0.2842 -0.8486 42 1 5.9785 -1.3276 1.2903 43 1 6.0684 -1.8971 4.0554 44 1 5.8424 -3.4271 3.1742 45 1 7.8612 -2.9430 1.8175 46 1 8.0866 -1.4132 2.6990 47 1 11.4402 -2.9347 2.6851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000434382375.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:21 Heat of formation + Delta-G solvation = -45.510888 kcal Electronic energy + Delta-G solvation = -27886.479662 eV Core-core repulsion = 23984.077269 eV Total energy + Delta-G solvation = -3902.402393 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.90609 -40.81538 -38.87293 -37.03957 -34.80990 -33.94193 -32.71342 -31.28253 -30.92354 -29.42475 -28.12406 -26.72493 -25.74865 -24.28615 -22.99349 -22.25587 -21.08084 -20.28273 -19.31641 -17.74188 -17.65892 -16.87295 -16.57710 -16.26477 -15.68917 -15.55571 -15.25279 -14.94904 -14.52192 -14.26417 -14.14521 -13.96567 -13.65276 -13.45915 -13.31551 -13.23484 -12.80215 -12.54447 -12.40791 -12.25833 -12.22236 -12.15853 -11.93074 -11.21563 -11.17539 -11.07722 -11.03736 -10.98914 -10.78045 -10.63902 -10.29779 -9.87175 -9.53523 -9.26857 -9.10102 -8.75954 -8.55077 -8.43607 -8.18150 -6.08540 -4.11061 1.10351 1.21701 2.83404 3.32175 3.35718 3.39514 3.53282 3.58755 4.23297 4.29155 4.42600 4.46851 4.53507 4.64421 4.74877 4.83256 4.89127 4.99732 5.16858 5.23642 5.28588 5.30333 5.35289 5.40034 5.47237 5.54154 5.65437 5.69569 5.75137 5.85157 5.90261 5.99795 6.07366 6.09498 6.19597 6.26680 6.38403 6.41353 6.64050 6.78554 6.85352 7.02254 7.15626 7.56180 7.63871 7.90595 8.25708 8.38947 8.93386 9.00994 9.53651 11.03116 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014371 B = 0.003054 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.835565 B = 9165.834716 C =10385.037481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.167 4.167 4 C 0.213 3.787 5 H 0.084 0.916 6 C -0.080 4.080 7 C -0.068 4.068 8 C -0.154 4.154 9 C 0.091 3.909 10 F -0.145 7.145 11 C -0.154 4.154 12 C -0.077 4.077 13 N -0.635 5.635 14 C 0.068 3.932 15 C 0.700 3.300 16 O -0.585 6.585 17 N -0.738 5.738 18 C 0.140 3.860 19 C 0.014 3.986 20 C -0.521 4.521 21 H 0.059 0.941 22 C 0.059 3.941 23 N -0.895 5.895 24 Si 0.897 3.103 25 H -0.275 1.275 26 H -0.287 1.287 27 H -0.276 1.276 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.392 0.608 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.021 0.979 46 H 0.021 0.979 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.870 10.312 -8.534 24.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.224 4.224 4 C 0.109 3.891 5 H 0.101 0.899 6 C -0.081 4.081 7 C -0.086 4.086 8 C -0.173 4.173 9 C 0.072 3.928 10 F -0.123 7.123 11 C -0.173 4.173 12 C -0.096 4.096 13 N -0.374 5.374 14 C -0.075 4.075 15 C 0.401 3.599 16 O -0.463 6.463 17 N -0.393 5.393 18 C 0.017 3.983 19 C -0.023 4.023 20 C -0.560 4.560 21 H 0.077 0.923 22 C -0.142 4.142 23 N -0.534 5.534 24 Si 0.724 3.276 25 H -0.201 1.201 26 H -0.213 1.213 27 H -0.201 1.201 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.227 0.773 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.039 0.961 46 H 0.040 0.960 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.102 9.990 -7.845 24.630 hybrid contribution 0.938 -0.168 0.582 1.116 sum -20.164 9.822 -7.263 23.576 Atomic orbital electron populations 1.21841 0.94001 1.02168 1.02460 1.21390 0.96626 0.96932 0.96742 1.22340 1.02591 0.95334 1.02099 1.19703 0.79885 0.97653 0.91848 0.89852 1.20054 0.94823 0.96090 0.97154 1.20777 0.98673 0.93968 0.95221 1.21095 0.96792 1.02482 0.96940 1.17695 0.96199 0.93288 0.85625 1.91479 1.93109 1.76234 1.51514 1.21030 1.00750 0.96609 0.98906 1.20735 0.96664 0.98401 0.93763 1.47116 1.06565 1.60200 1.23512 1.22029 0.97266 0.98645 0.89566 1.15963 0.82348 0.79225 0.82368 1.90905 1.67532 1.54600 1.33219 1.45681 1.05157 1.60806 1.27640 1.21579 0.93715 0.94688 0.88301 1.19308 0.87501 0.97788 0.97726 1.21018 0.92217 1.35766 1.06955 0.92296 1.24986 0.97678 0.95660 0.95912 1.69945 1.08337 1.45543 1.29575 0.86575 0.78497 0.80371 0.82124 1.20097 1.21257 1.20101 0.92159 0.91973 0.92347 0.89757 0.92017 0.91074 0.92568 0.85539 0.85072 0.85020 0.85286 0.92525 0.91350 0.89979 0.77298 0.92860 0.92864 0.96054 0.96048 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 8.90 37.16 0.33 -0.62 16 2 C -0.10 -0.74 2.19 -90.62 -0.20 -0.94 16 3 C -0.17 -1.19 7.37 37.16 0.27 -0.92 16 4 C 0.21 2.32 2.09 -69.08 -0.14 2.18 16 5 H 0.08 0.99 8.04 -51.93 -0.42 0.57 16 6 C -0.08 -0.95 2.72 -104.61 -0.29 -1.23 16 7 C -0.07 -0.85 6.94 -39.59 -0.27 -1.12 16 8 C -0.15 -1.93 10.03 -39.51 -0.40 -2.33 16 9 C 0.09 1.17 7.30 -39.42 -0.29 0.88 16 10 F -0.14 -1.92 17.27 2.25 0.04 -1.89 16 11 C -0.15 -1.77 10.03 -39.51 -0.40 -2.17 16 12 C -0.08 -0.87 8.42 -39.59 -0.33 -1.20 16 13 N -0.64 -7.88 2.17 -181.01 -0.39 -8.27 16 14 C 0.07 0.61 8.15 59.85 0.49 1.10 16 15 C 0.70 12.09 7.65 -86.92 -0.66 11.43 16 16 O -0.59 -12.36 15.57 5.29 0.08 -12.28 16 17 N -0.74 -13.09 5.42 -65.23 -0.35 -13.45 16 18 C 0.14 3.04 5.61 -4.04 -0.02 3.01 16 19 C 0.01 0.36 5.09 -27.88 -0.14 0.21 16 20 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 21 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 22 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 23 N -0.90 -26.12 13.29 55.43 0.74 -25.38 16 24 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 29 H 0.06 0.44 6.60 -51.93 -0.34 0.10 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.56 6.50 -51.93 -0.34 0.23 16 32 H 0.06 0.51 6.41 -51.93 -0.33 0.17 16 33 H 0.07 0.52 4.07 -51.93 -0.21 0.31 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.13 1.51 6.92 -52.48 -0.36 1.15 16 36 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.06 0.46 6.71 -51.93 -0.35 0.11 16 40 H 0.07 0.63 6.52 -51.93 -0.34 0.29 16 41 H 0.08 0.55 5.08 -51.93 -0.26 0.28 16 42 H 0.39 6.04 6.27 -40.82 -0.26 5.78 16 43 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 44 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 45 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 371.99 15.07 5.61 5.61 Total: -1.00 -32.74 371.99 -8.75 -41.49 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -6.98 Total: 2.71 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -2.46 Total: -5.00 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -0.01 Total: -47.11 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.08 Total: -12.28 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.74 -8.75 -41.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434382375.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.018 kcal (2) G-P(sol) polarization free energy of solvation -32.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds