Wall clock time and date at job start Sat Apr 11 2020 00:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47274 * 2 1 4 4 C 1.52998 * 109.47066 * 119.99792 * 2 1 3 5 5 H 1.09001 * 109.47254 * 52.24064 * 4 2 1 6 6 C 1.50701 * 109.47270 * 292.24048 * 4 2 1 7 7 C 1.38249 * 119.97330 * 274.89855 * 6 4 2 8 8 C 1.38195 * 120.02482 * 179.72059 * 7 6 4 9 9 C 1.38462 * 119.97375 * 0.52993 * 8 7 6 10 10 F 1.35104 * 120.02727 * 179.71907 * 9 8 7 11 11 C 1.38463 * 119.95027 * 359.74732 * 9 8 7 12 12 C 1.38199 * 119.97206 * 359.97438 * 11 9 8 13 13 N 1.46501 * 109.47459 * 172.23675 * 4 2 1 14 14 C 1.46501 * 119.99787 * 2.49259 * 13 4 2 15 15 C 1.34780 * 120.00027 * 182.48704 * 13 4 2 16 16 O 1.21581 * 120.00067 * 359.97438 * 15 13 4 17 17 N 1.34775 * 119.99880 * 180.02562 * 15 13 4 18 18 C 1.46497 * 119.99980 * 180.02562 * 17 15 13 19 19 C 1.53007 * 109.46837 * 180.02562 * 18 17 15 20 20 C 1.50704 * 109.46845 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00053 * 0.02562 * 20 19 18 22 22 C 1.37874 * 120.00007 * 179.97438 * 20 19 18 23 23 N 1.31519 * 120.00122 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00033 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46928 * 60.00030 * 24 22 20 26 26 H 1.48495 * 109.46914 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46917 * 300.00147 * 24 22 20 28 28 H 1.09008 * 109.46962 * 60.00079 * 1 2 3 29 29 H 1.08998 * 109.47148 * 300.00262 * 1 2 3 30 30 H 1.08996 * 109.46918 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47438 * 239.99908 * 2 1 3 32 32 H 1.08996 * 109.47146 * 53.85394 * 3 2 1 33 33 H 1.09002 * 109.47266 * 173.85770 * 3 2 1 34 34 H 1.08997 * 109.47088 * 293.85260 * 3 2 1 35 35 H 1.08003 * 119.98799 * 359.97438 * 7 6 4 36 36 H 1.08001 * 120.01644 * 180.29797 * 8 7 6 37 37 H 1.07997 * 120.01322 * 179.97438 * 11 9 8 38 38 H 1.08001 * 119.98597 * 180.02562 * 12 11 9 39 39 H 1.08997 * 109.47226 * 92.88992 * 14 13 4 40 40 H 1.08998 * 109.47001 * 212.89129 * 14 13 4 41 41 H 1.08996 * 109.47058 * 332.89156 * 14 13 4 42 42 H 0.97010 * 119.99970 * 359.97438 * 17 15 13 43 43 H 1.09004 * 109.46904 * 299.99378 * 18 17 15 44 44 H 1.08992 * 109.47224 * 60.00118 * 18 17 15 45 45 H 1.09004 * 109.46781 * 299.99349 * 19 18 17 46 46 H 1.08995 * 109.47647 * 59.99755 * 19 18 17 47 47 H 0.96994 * 119.99838 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.5678 -1.7010 1.3214 6 6 1.7004 0.0913 2.4722 7 6 2.5417 1.1095 2.8804 8 6 2.2284 1.8590 3.9984 9 6 1.0770 1.5828 4.7161 10 9 0.7726 2.3112 5.8125 11 6 0.2380 0.5590 4.3096 12 6 0.5505 -0.1854 3.1879 13 7 3.4930 -0.8849 1.1597 14 6 4.2230 -0.3345 0.0149 15 6 4.1583 -1.5418 2.1306 16 8 3.5525 -1.9981 3.0809 17 7 5.4951 -1.6920 2.0484 18 6 6.2181 -2.4064 3.1033 19 6 7.7111 -2.4340 2.7696 20 6 8.4550 -3.1684 3.8552 21 1 7.9167 -3.5752 4.6985 22 6 9.8226 -3.3220 3.7712 23 7 10.4780 -2.8270 2.7440 24 14 10.7447 -4.2317 5.1171 25 1 10.2329 -5.6222 5.2148 26 1 12.1936 -4.2585 4.7932 27 1 10.5406 -3.5368 6.4136 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.5897 1.9871 0.8298 33 1 3.1245 1.4445 0.1100 34 1 1.7693 1.9236 -0.9399 35 1 3.4421 1.3219 2.3231 36 1 2.8834 2.6576 4.3144 37 1 -0.6601 0.3424 4.8688 38 1 -0.1040 -0.9838 2.8704 39 1 4.5792 0.6664 0.2583 40 1 5.0730 -0.9764 -0.2166 41 1 3.5599 -0.2842 -0.8486 42 1 5.9785 -1.3276 1.2903 43 1 6.0684 -1.8971 4.0554 44 1 5.8424 -3.4271 3.1742 45 1 7.8612 -2.9430 1.8175 46 1 8.0866 -1.4132 2.6990 47 1 11.4402 -2.9347 2.6851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000434382375.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:21 Heat of formation + Delta-G solvation = -63.705745 kcal Electronic energy + Delta-G solvation = -27887.268650 eV Core-core repulsion = 23984.077269 eV Total energy + Delta-G solvation = -3903.191382 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.90765 -41.85787 -40.03483 -37.99267 -36.52129 -35.12850 -34.45405 -32.18304 -31.91090 -31.17126 -28.85586 -27.54991 -27.01499 -25.83857 -23.92241 -23.22714 -22.82658 -21.44798 -20.27612 -18.97328 -18.63959 -18.47608 -17.74383 -17.54646 -16.77670 -16.60530 -16.50124 -16.26733 -16.00049 -15.53556 -15.25951 -14.93650 -14.65754 -14.58044 -14.46466 -14.27810 -14.13567 -13.93927 -13.29668 -13.26390 -13.08688 -12.98295 -12.91041 -12.83236 -12.67331 -12.52902 -12.22051 -12.00578 -11.82510 -11.70825 -11.63683 -11.49293 -11.41646 -11.06385 -10.59353 -10.10190 -10.01914 -9.61710 -9.35343 -8.23709 -6.33823 0.15862 0.29640 1.41721 1.44041 1.51744 1.68840 2.20783 2.40851 2.61440 3.11035 3.12182 3.29464 3.65542 3.75688 3.78417 3.96000 4.06926 4.18491 4.29651 4.34067 4.40229 4.46686 4.52107 4.56725 4.70822 4.74034 4.86879 4.88298 4.89444 4.95446 4.97685 5.08742 5.09978 5.15424 5.26004 5.27662 5.32040 5.41083 5.47504 5.52298 5.53833 5.59923 5.66019 5.80775 5.93444 5.99281 6.17959 6.78799 7.04334 7.35373 7.63470 8.87969 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014371 B = 0.003054 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.835565 B = 9165.834716 C =10385.037481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 C -0.165 4.165 4 C 0.209 3.791 5 H 0.075 0.925 6 C -0.084 4.084 7 C -0.079 4.079 8 C -0.165 4.165 9 C 0.071 3.929 10 F -0.151 7.151 11 C -0.155 4.155 12 C -0.083 4.083 13 N -0.623 5.623 14 C 0.059 3.941 15 C 0.698 3.302 16 O -0.627 6.627 17 N -0.735 5.735 18 C 0.163 3.837 19 C 0.027 3.973 20 C -0.548 4.548 21 H 0.057 0.943 22 C 0.009 3.991 23 N -0.925 5.925 24 Si 0.963 3.037 25 H -0.268 1.268 26 H -0.280 1.280 27 H -0.270 1.270 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.048 0.952 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.128 0.872 36 H 0.138 0.862 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.112 0.888 42 H 0.405 0.595 43 H 0.038 0.962 44 H 0.041 0.959 45 H 0.009 0.991 46 H 0.008 0.992 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.609 10.338 -9.652 25.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 C -0.222 4.222 4 C 0.106 3.894 5 H 0.092 0.908 6 C -0.086 4.086 7 C -0.097 4.097 8 C -0.184 4.184 9 C 0.051 3.949 10 F -0.130 7.130 11 C -0.173 4.173 12 C -0.101 4.101 13 N -0.360 5.360 14 C -0.083 4.083 15 C 0.399 3.601 16 O -0.508 6.508 17 N -0.391 5.391 18 C 0.038 3.962 19 C -0.011 4.011 20 C -0.586 4.586 21 H 0.075 0.925 22 C -0.190 4.190 23 N -0.565 5.565 24 Si 0.787 3.213 25 H -0.193 1.193 26 H -0.205 1.205 27 H -0.195 1.195 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.146 0.854 36 H 0.156 0.844 37 H 0.169 0.831 38 H 0.167 0.833 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.130 0.870 42 H 0.241 0.759 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.027 0.973 46 H 0.026 0.974 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.862 10.053 -9.018 25.697 hybrid contribution 1.120 -0.145 0.871 1.426 sum -20.742 9.908 -8.147 24.388 Atomic orbital electron populations 1.21835 0.93018 1.02612 1.02815 1.21395 0.97328 0.96793 0.95280 1.22320 1.02364 0.94964 1.02514 1.19931 0.78667 0.97573 0.93269 0.90750 1.20248 0.94932 0.95856 0.97526 1.20852 0.98979 0.94445 0.95439 1.21264 0.97053 1.02912 0.97163 1.17926 0.96922 0.94108 0.85897 1.91456 1.93197 1.76495 1.51857 1.21301 1.01129 0.95906 0.98992 1.21024 0.96856 0.98724 0.93504 1.47099 1.07290 1.58602 1.22968 1.22342 0.97708 0.99037 0.89191 1.16090 0.81867 0.79329 0.82812 1.90871 1.68216 1.56451 1.35241 1.45371 1.05651 1.60835 1.27228 1.21014 0.92104 0.94308 0.88773 1.19098 0.89252 0.96314 0.96433 1.21431 0.93083 1.36380 1.07734 0.92494 1.25834 0.98545 0.96368 0.98210 1.70043 1.08776 1.46452 1.31198 0.85532 0.77289 0.79232 0.79211 1.19340 1.20464 1.19492 0.90679 0.92747 0.91896 0.88156 0.93295 0.91209 0.90823 0.85424 0.84385 0.83080 0.83285 0.91165 0.91455 0.86967 0.75853 0.94340 0.94065 0.97275 0.97395 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.90 71.98 0.64 -0.87 16 2 C -0.09 -1.10 2.19 -10.79 -0.02 -1.13 16 3 C -0.16 -1.94 7.37 71.98 0.53 -1.41 16 4 C 0.21 4.24 2.09 44.24 0.09 4.33 16 5 H 0.07 1.67 8.04 -2.39 -0.02 1.65 16 6 C -0.08 -1.94 2.72 -19.86 -0.05 -2.00 16 7 C -0.08 -1.94 6.94 22.26 0.15 -1.78 16 8 C -0.17 -4.18 10.03 22.31 0.22 -3.95 16 9 C 0.07 1.81 7.30 22.38 0.16 1.98 16 10 F -0.15 -4.05 17.27 44.97 0.78 -3.28 16 11 C -0.15 -3.46 10.03 22.31 0.22 -3.24 16 12 C -0.08 -1.78 8.42 22.26 0.19 -1.60 16 13 N -0.62 -14.65 2.17 -844.86 -1.84 -16.48 16 14 C 0.06 0.91 8.15 127.77 1.04 1.96 16 15 C 0.70 23.94 7.65 179.05 1.37 25.31 16 16 O -0.63 -26.74 15.57 -3.97 -0.06 -26.80 16 17 N -0.73 -26.09 5.42 -478.54 -2.59 -28.69 16 18 C 0.16 7.19 5.61 86.38 0.48 7.68 16 19 C 0.03 1.35 5.09 29.85 0.15 1.50 16 20 C -0.55 -30.90 9.11 25.60 0.23 -30.67 16 21 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16 22 C 0.01 0.53 5.46 84.65 0.46 0.99 16 23 N -0.93 -54.13 13.29 21.45 0.28 -53.85 16 24 Si 0.96 43.84 29.54 68.60 2.03 45.86 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 27 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 28 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 29 H 0.05 0.66 6.60 -2.39 -0.02 0.65 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.10 0.96 6.50 -2.38 -0.02 0.94 16 32 H 0.05 0.72 6.41 -2.39 -0.02 0.71 16 33 H 0.07 0.84 4.07 -2.39 -0.01 0.83 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.13 3.00 6.92 -2.91 -0.02 2.98 16 36 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 37 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 38 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 39 H 0.07 0.96 6.71 -2.39 -0.02 0.94 16 40 H 0.07 1.10 6.52 -2.39 -0.02 1.08 16 41 H 0.11 1.10 5.08 -2.39 -0.01 1.09 16 42 H 0.40 12.28 6.27 -92.70 -0.58 11.70 16 43 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 47 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -70.90 371.99 4.88 -66.03 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.40 Total: 20.11 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: 5.88 Total: -2.90 kcal Atomic # 7 Polarization: -94.87 SS G_CDS: -4.14 Total: -99.02 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.06 Total: -26.80 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.78 Total: -3.28 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -70.90 4.88 -66.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434382375.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.320 kcal (2) G-P(sol) polarization free energy of solvation -70.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds