Wall clock time and date at job start Sat Apr 11 2020 00:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 2 7 7 O 1.21593 * 119.99949 * 0.28071 * 6 5 4 8 8 N 1.34777 * 120.00128 * 180.27942 * 6 5 4 9 9 C 1.46499 * 120.00065 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47198 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.47200 * 300.00182 * 10 9 8 12 12 C 1.53005 * 109.46471 * 60.00209 * 10 9 8 13 13 C 1.50701 * 109.47211 * 179.97438 * 10 9 8 14 14 H 1.08002 * 119.99761 * 0.02562 * 13 10 9 15 15 C 1.37876 * 119.99724 * 180.02562 * 13 10 9 16 16 N 1.31514 * 120.00074 * 0.02562 * 15 13 10 17 17 Si 1.86795 * 119.99758 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47294 * 90.00143 * 17 15 13 19 19 H 1.48499 * 109.47218 * 210.00003 * 17 15 13 20 20 H 1.48500 * 109.47317 * 330.00365 * 17 15 13 21 21 C 1.50703 * 109.46890 * 240.00388 * 2 1 3 22 22 C 1.38249 * 119.97303 * 299.72157 * 21 2 1 23 23 C 1.38194 * 120.02379 * 179.77024 * 22 21 2 24 24 C 1.38459 * 119.97315 * 0.50929 * 23 22 21 25 25 F 1.35100 * 120.02592 * 179.76492 * 24 23 22 26 26 C 1.38456 * 119.95099 * 359.74412 * 24 23 22 27 27 C 1.38197 * 119.97583 * 0.02562 * 26 24 23 28 28 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 29 29 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 31 31 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 32 32 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 33 33 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 34 34 H 0.97000 * 119.99549 * 359.97438 * 8 6 5 35 35 H 1.09000 * 109.47602 * 299.99940 * 9 8 6 36 36 H 1.09006 * 109.46868 * 59.99976 * 9 8 6 37 37 H 1.09005 * 109.46870 * 59.99810 * 11 10 9 38 38 H 1.09004 * 109.46783 * 179.97438 * 11 10 9 39 39 H 1.08998 * 109.47156 * 299.99872 * 11 10 9 40 40 H 1.08995 * 109.47438 * 60.00401 * 12 10 9 41 41 H 1.09004 * 109.46658 * 180.02562 * 12 10 9 42 42 H 1.08996 * 109.47069 * 299.99541 * 12 10 9 43 43 H 0.96999 * 119.99800 * 180.02562 * 16 15 13 44 44 H 1.07997 * 119.98592 * 0.02562 * 22 21 2 45 45 H 1.08001 * 120.01504 * 180.25454 * 23 22 21 46 46 H 1.08000 * 120.01671 * 179.97438 * 26 24 23 47 47 H 1.08002 * 119.99346 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9912 -0.4163 3.6661 7 8 2.6228 -1.4491 3.7797 8 7 1.6298 0.2768 4.7641 9 6 1.9985 -0.2139 6.0943 10 6 1.4712 0.7511 7.1581 11 6 2.0824 2.1364 6.9380 12 6 -0.0524 0.8432 7.0527 13 6 1.8499 0.2461 8.5266 14 1 2.4110 -0.6713 8.6274 15 6 1.4801 0.9551 9.6497 16 7 0.7965 2.0719 9.5269 17 14 1.9501 0.3295 11.3459 18 1 3.2706 0.8888 11.7315 19 1 0.9250 0.7555 12.3322 20 1 2.0284 -1.1533 11.3224 21 6 2.0324 -0.7104 -1.2306 22 6 1.7028 -2.0356 -1.4459 23 6 2.1589 -2.6866 -2.5764 24 6 2.9549 -2.0142 -3.4881 25 9 3.4053 -2.6510 -4.5912 26 6 3.2887 -0.6885 -3.2687 27 6 2.8275 -0.0381 -2.1399 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.1264 -0.7995 1.2056 32 1 1.6054 -1.7198 1.2950 33 1 1.1483 0.8591 2.3518 34 1 1.1263 1.1008 4.6734 35 1 1.5634 -1.2010 6.2511 36 1 3.0840 -0.2792 6.1695 37 1 1.8081 2.5014 5.9482 38 1 1.7063 2.8239 7.6957 39 1 3.1678 2.0707 7.0131 40 1 -0.4878 -0.1436 7.2095 41 1 -0.4281 1.5311 7.8102 42 1 -0.3267 1.2083 6.0630 43 1 0.5366 2.5708 10.3171 44 1 1.0852 -2.5610 -0.7326 45 1 1.8979 -3.7207 -2.7466 46 1 3.9099 -0.1631 -3.9789 47 1 3.0874 0.9961 -1.9687 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457975947.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:35 Heat of formation + Delta-G solvation = -85.671675 kcal Electronic energy + Delta-G solvation = -26424.936389 eV Core-core repulsion = 22520.792494 eV Total energy + Delta-G solvation = -3904.143896 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.89194 -41.12980 -40.30189 -38.28747 -36.91315 -34.97429 -33.99528 -32.50217 -32.09149 -29.92395 -27.86897 -27.52425 -27.28709 -26.09278 -24.33832 -23.68948 -21.96547 -21.27360 -20.54743 -19.51519 -18.64233 -17.74950 -17.60362 -16.98165 -16.67820 -16.63109 -16.58419 -16.31577 -15.54833 -15.36506 -15.26302 -14.93646 -14.69072 -14.56758 -14.41614 -14.07396 -13.96436 -13.91944 -13.56400 -13.19986 -13.11952 -13.06683 -12.66831 -12.57828 -12.32037 -12.20758 -12.11842 -12.11153 -12.02720 -11.64549 -11.44851 -11.35686 -11.11045 -10.67440 -10.38417 -10.25528 -10.04487 -9.60838 -9.53299 -8.00209 -6.15259 0.13816 0.29722 1.43685 1.46688 1.54709 1.85255 2.25652 2.47885 2.61608 3.23364 3.31051 3.43838 3.67945 3.79076 3.95278 3.99490 4.11229 4.34068 4.43145 4.45333 4.46760 4.57167 4.74708 4.77622 4.83513 4.94341 4.99932 5.03679 5.09944 5.10353 5.12977 5.15694 5.18987 5.24002 5.28551 5.38579 5.42225 5.56007 5.61919 5.67384 5.69990 5.70989 5.93867 6.13233 6.19128 6.25505 6.46772 6.88966 7.22309 7.52149 7.69289 8.98578 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.036008 B = 0.001923 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.425108 B =14557.355863 C =14815.328064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.049 4.049 3 H 0.107 0.893 4 C 0.148 3.852 5 N -0.730 5.730 6 C 0.695 3.305 7 O -0.644 6.644 8 N -0.726 5.726 9 C 0.168 3.832 10 C 0.051 3.949 11 C -0.119 4.119 12 C -0.119 4.119 13 C -0.527 4.527 14 H 0.043 0.957 15 C 0.027 3.973 16 N -0.898 5.898 17 Si 0.944 3.056 18 H -0.280 1.280 19 H -0.283 1.283 20 H -0.277 1.277 21 C -0.088 4.088 22 C -0.089 4.089 23 C -0.159 4.159 24 C 0.071 3.929 25 F -0.152 7.152 26 C -0.156 4.156 27 C -0.084 4.084 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.411 0.589 34 H 0.406 0.594 35 H 0.034 0.966 36 H 0.033 0.967 37 H 0.038 0.962 38 H 0.062 0.938 39 H 0.016 0.984 40 H 0.017 0.983 41 H 0.062 0.938 42 H 0.038 0.962 43 H 0.260 0.740 44 H 0.141 0.859 45 H 0.144 0.856 46 H 0.150 0.850 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.447 0.043 -25.813 25.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.067 4.067 3 H 0.125 0.875 4 C 0.024 3.976 5 N -0.387 5.387 6 C 0.395 3.605 7 O -0.527 6.527 8 N -0.381 5.381 9 C 0.043 3.957 10 C 0.050 3.950 11 C -0.177 4.177 12 C -0.177 4.177 13 C -0.565 4.565 14 H 0.062 0.938 15 C -0.172 4.172 16 N -0.537 5.537 17 Si 0.771 3.229 18 H -0.206 1.206 19 H -0.208 1.208 20 H -0.202 1.202 21 C -0.088 4.088 22 C -0.107 4.107 23 C -0.178 4.178 24 C 0.052 3.948 25 F -0.131 7.131 26 C -0.175 4.175 27 C -0.101 4.101 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.248 0.752 34 H 0.243 0.757 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.081 0.919 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.159 0.841 45 H 0.161 0.839 46 H 0.168 0.832 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.947 -0.771 -25.631 25.660 hybrid contribution 0.088 -0.092 0.902 0.911 sum -0.860 -0.863 -24.729 24.759 Atomic orbital electron populations 1.21893 0.92654 1.02750 1.02963 1.20280 0.97250 1.00008 0.89188 0.87506 1.21233 0.99213 0.94817 0.82333 1.44899 1.61328 1.29166 1.03349 1.16213 0.79739 0.83056 0.81492 1.90866 1.47850 1.27229 1.86741 1.45175 1.60041 1.28113 1.04766 1.21100 0.97526 0.96885 0.80173 1.18371 0.93217 0.92006 0.91392 1.21655 0.97766 0.99087 0.99185 1.21651 0.97142 0.99519 0.99358 1.21268 1.35272 1.08234 0.91764 0.93839 1.25440 0.95010 0.95184 1.01595 1.69903 1.38565 1.15611 1.29609 0.85778 0.77854 0.78504 0.80767 1.20558 1.20840 1.20177 1.19867 0.98276 0.94257 0.96436 1.21098 0.98884 0.94380 0.96379 1.21326 0.99675 1.01763 0.94992 1.18043 0.99333 0.92296 0.85101 1.91470 1.87766 1.82292 1.51592 1.21379 1.02829 0.92953 1.00297 1.21230 0.95387 1.01218 0.92299 0.91055 0.92499 0.91450 0.93076 0.92529 0.75186 0.75731 0.94778 0.94817 0.94274 0.91949 0.96447 0.96422 0.91948 0.94277 0.93063 0.84127 0.83857 0.83245 0.82533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.88 71.98 0.64 -0.86 16 2 C -0.05 -0.57 2.60 -11.54 -0.03 -0.60 16 3 H 0.11 0.91 7.87 -2.39 -0.02 0.89 16 4 C 0.15 2.89 4.80 86.38 0.41 3.30 16 5 N -0.73 -16.10 5.29 -478.54 -2.53 -18.63 16 6 C 0.70 23.32 8.57 179.05 1.53 24.85 16 7 O -0.64 -27.87 16.34 -4.01 -0.07 -27.93 16 8 N -0.73 -24.44 4.96 -478.52 -2.37 -26.81 16 9 C 0.17 7.15 4.50 86.38 0.39 7.54 16 10 C 0.05 2.32 0.50 -52.93 -0.03 2.30 16 11 C -0.12 -5.18 8.08 71.98 0.58 -4.60 16 12 C -0.12 -5.17 8.08 71.98 0.58 -4.58 16 13 C -0.53 -27.75 8.01 25.60 0.21 -27.55 16 14 H 0.04 2.35 7.74 -2.91 -0.02 2.33 16 15 C 0.03 1.44 5.15 84.65 0.44 1.87 16 16 N -0.90 -47.39 9.35 21.45 0.20 -47.19 16 17 Si 0.94 42.52 29.54 68.60 2.03 44.54 16 18 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 C -0.09 -1.15 4.78 -19.86 -0.09 -1.24 16 22 C -0.09 -1.28 8.76 22.26 0.19 -1.09 16 23 C -0.16 -2.46 10.03 22.31 0.22 -2.24 16 24 C 0.07 1.21 7.30 22.37 0.16 1.37 16 25 F -0.15 -2.95 17.27 44.97 0.78 -2.18 16 26 C -0.16 -2.12 10.03 22.31 0.22 -1.90 16 27 C -0.08 -0.98 9.67 22.26 0.22 -0.76 16 28 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.65 7.40 -2.39 -0.02 0.63 16 30 H 0.07 0.66 7.18 -2.39 -0.02 0.64 16 31 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.06 1.23 7.55 -2.39 -0.02 1.22 16 33 H 0.41 6.27 7.67 -92.71 -0.71 5.56 16 34 H 0.41 11.48 6.18 -92.71 -0.57 10.90 16 35 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.03 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.04 1.40 6.86 -2.38 -0.02 1.38 16 38 H 0.06 3.03 6.07 -2.38 -0.01 3.01 16 39 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.06 3.02 6.07 -2.38 -0.01 3.01 16 42 H 0.04 1.39 6.86 -2.39 -0.02 1.38 16 43 H 0.26 13.22 8.31 -92.71 -0.77 12.45 16 44 H 0.14 1.77 7.16 -2.91 -0.02 1.75 16 45 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 46 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 47 H 0.16 1.05 7.94 -2.91 -0.02 1.03 16 Total: -1.00 -65.32 379.65 3.39 -61.94 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -0.30 Total: 20.46 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 5.65 Total: -4.19 kcal Atomic # 7 Polarization: -87.93 SS G_CDS: -4.70 Total: -92.64 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.07 Total: -27.93 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.18 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Total: -65.32 3.39 -61.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457975947.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.735 kcal (2) G-P(sol) polarization free energy of solvation -65.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds