Wall clock time and date at job start Sat Apr 11 2020 00:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.50702 * 109.47006 * 184.99905 * 4 2 1 6 6 C 1.38223 * 120.01388 * 264.72917 * 5 4 2 7 7 C 1.38222 * 120.02717 * 179.72159 * 6 5 4 8 8 C 1.38272 * 120.04451 * 0.55103 * 7 6 5 9 9 C 1.38169 * 120.03266 * 359.72295 * 8 7 6 10 10 C 1.38436 * 120.00990 * 84.99843 * 5 4 2 11 11 F 1.35095 * 120.02840 * 359.97438 * 10 5 4 12 12 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 13 13 C 1.34777 * 119.99828 * 84.72116 * 12 2 1 14 14 O 1.21593 * 119.99949 * 0.28071 * 13 12 2 15 15 N 1.34777 * 120.00128 * 180.27942 * 13 12 2 16 16 C 1.46499 * 120.00065 * 180.02562 * 15 13 12 17 17 C 1.53004 * 109.47198 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47200 * 300.00182 * 17 16 15 19 19 C 1.53005 * 109.46471 * 60.00209 * 17 16 15 20 20 C 1.50701 * 109.47211 * 179.97438 * 17 16 15 21 21 H 1.08002 * 119.99761 * 0.02562 * 20 17 16 22 22 C 1.37876 * 119.99724 * 180.02562 * 20 17 16 23 23 N 1.31514 * 120.00074 * 0.02562 * 22 20 17 24 24 Si 1.86795 * 119.99758 * 180.02562 * 22 20 17 25 25 H 1.48503 * 109.47294 * 90.00143 * 24 22 20 26 26 H 1.48499 * 109.47218 * 210.00003 * 24 22 20 27 27 H 1.48500 * 109.47317 * 330.00365 * 24 22 20 28 28 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 29 29 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 30 30 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 32 32 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 33 33 H 1.08002 * 119.98694 * 359.97438 * 6 5 4 34 34 H 1.07992 * 119.97604 * 180.25214 * 7 6 5 35 35 H 1.08008 * 119.97912 * 179.74660 * 8 7 6 36 36 H 1.07994 * 120.01670 * 180.02562 * 9 8 7 37 37 H 0.97001 * 120.00384 * 265.00562 * 12 2 1 38 38 H 0.97000 * 119.99549 * 359.97438 * 15 13 12 39 39 H 1.09000 * 109.47602 * 299.99940 * 16 15 13 40 40 H 1.09006 * 109.46868 * 59.99976 * 16 15 13 41 41 H 1.09005 * 109.46870 * 59.99810 * 18 17 16 42 42 H 1.09004 * 109.46783 * 179.97438 * 18 17 16 43 43 H 1.08998 * 109.47156 * 299.99872 * 18 17 16 44 44 H 1.08995 * 109.47438 * 60.00401 * 19 17 16 45 45 H 1.09004 * 109.46658 * 180.02562 * 19 17 16 46 46 H 1.08996 * 109.47069 * 299.99541 * 19 17 16 47 47 H 0.96999 * 119.99800 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3127 6 6 4.3290 -1.6348 0.8118 7 6 5.7066 -1.5350 0.8646 8 6 6.2988 -0.4201 1.4289 9 6 5.5141 0.5980 1.9354 10 6 4.1337 0.5017 1.8778 11 9 3.3654 1.4969 2.3722 12 7 2.0184 -0.6906 -1.1962 13 6 2.1417 -0.0196 -2.3585 14 8 1.8526 1.1602 -2.4130 15 7 2.5857 -0.6562 -3.4603 16 6 2.7203 0.0733 -4.7236 17 6 3.2399 -0.8741 -5.8068 18 6 4.6040 -1.4271 -5.3893 19 6 2.2546 -2.0305 -5.9882 20 6 3.3778 -0.1238 -7.1065 21 1 3.1210 0.9241 -7.1549 22 6 3.8319 -0.7752 -8.2337 23 7 4.1441 -2.0514 -8.1747 24 14 4.0035 0.1549 -9.8444 25 1 5.3657 0.7391 -9.9361 26 1 3.7873 -0.7774 -10.9799 27 1 2.9939 1.2427 -9.8979 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.6054 -0.2618 2.1369 32 1 1.7517 -1.7715 1.2056 33 1 3.8675 -2.5082 0.3752 34 1 6.3208 -2.3304 0.4693 35 1 7.3754 -0.3451 1.4733 36 1 5.9769 1.4688 2.3756 37 1 2.2490 -1.6318 -1.1527 38 1 2.8167 -1.5973 -3.4167 39 1 1.7486 0.4676 -5.0209 40 1 3.4226 0.8970 -4.5944 41 1 4.5038 -1.9699 -4.4493 42 1 4.9739 -2.1024 -6.1609 43 1 5.3059 -0.6032 -5.2600 44 1 1.2828 -1.6366 -6.2857 45 1 2.6249 -2.7058 -6.7596 46 1 2.1544 -2.5733 -5.0483 47 1 4.4639 -2.5095 -8.9677 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457986813.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:40 Heat of formation + Delta-G solvation = -68.059885 kcal Electronic energy + Delta-G solvation = -27669.814182 eV Core-core repulsion = 23766.433990 eV Total energy + Delta-G solvation = -3903.380191 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.03506 -39.90643 -39.09234 -36.81845 -35.71214 -33.25211 -32.42335 -31.10067 -30.68509 -29.90767 -26.74996 -25.69991 -25.54686 -24.76850 -23.02310 -22.37683 -21.16972 -20.37272 -18.74043 -18.11482 -17.74784 -16.69595 -16.12674 -15.99344 -15.79978 -15.55550 -14.95798 -14.74143 -14.48400 -14.16099 -14.00361 -13.75211 -13.44101 -13.25849 -12.93209 -12.83879 -12.58738 -12.45493 -12.30448 -12.15478 -11.98133 -11.62127 -11.36983 -11.17442 -11.08918 -11.04926 -10.83726 -10.67215 -10.35698 -10.18640 -9.69755 -9.60289 -9.27798 -9.16200 -8.96907 -8.77668 -8.76324 -8.39091 -8.14012 -6.00229 -4.09824 0.96052 1.00374 3.13946 3.29767 3.36642 3.37633 3.41523 3.72061 4.07639 4.34656 4.40598 4.50300 4.69260 4.73124 4.84704 4.97527 5.10367 5.17505 5.26219 5.26676 5.42283 5.53571 5.65039 5.71601 5.83470 5.90567 6.00452 6.11954 6.19837 6.22894 6.26434 6.40610 6.53762 6.69150 6.75819 6.83975 6.85126 6.94515 7.06144 7.15186 7.35103 7.46694 7.58395 7.71993 8.03607 8.15060 8.41121 8.55399 8.90210 9.12688 9.55807 11.01185 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016940 B = 0.002972 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.542170 B = 9418.191761 C =10122.324436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.168 3.832 3 H 0.087 0.913 4 C -0.088 4.088 5 C -0.111 4.111 6 C -0.086 4.086 7 C -0.125 4.125 8 C -0.096 4.096 9 C -0.153 4.153 10 C 0.100 3.900 11 F -0.138 7.138 12 N -0.747 5.747 13 C 0.699 3.301 14 O -0.599 6.599 15 N -0.734 5.734 16 C 0.151 3.849 17 C 0.056 3.944 18 C -0.128 4.128 19 C -0.129 4.129 20 C -0.504 4.504 21 H 0.057 0.943 22 C 0.066 3.934 23 N -0.887 5.887 24 Si 0.893 3.107 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.274 1.274 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.390 0.610 38 H 0.392 0.608 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.005 0.995 42 H 0.084 0.916 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.084 0.916 46 H 0.005 0.995 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.203 -2.947 21.512 21.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.062 3.938 3 H 0.106 0.894 4 C -0.126 4.126 5 C -0.111 4.111 6 C -0.104 4.104 7 C -0.143 4.143 8 C -0.114 4.114 9 C -0.171 4.171 10 C 0.080 3.920 11 F -0.117 7.117 12 N -0.403 5.403 13 C 0.399 3.601 14 O -0.478 6.478 15 N -0.388 5.388 16 C 0.028 3.972 17 C 0.055 3.945 18 C -0.186 4.186 19 C -0.186 4.186 20 C -0.543 4.543 21 H 0.076 0.924 22 C -0.135 4.135 23 N -0.525 5.525 24 Si 0.721 3.279 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.199 1.199 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.223 0.777 38 H 0.227 0.773 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.024 0.976 42 H 0.103 0.897 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.103 0.897 46 H 0.024 0.976 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.030 -1.932 21.319 21.406 hybrid contribution 0.289 -0.206 -0.804 0.879 sum 0.260 -2.138 20.515 20.628 Atomic orbital electron populations 1.22201 0.95240 1.02003 1.02711 1.20639 0.93583 0.97262 0.82310 0.89449 1.20905 0.90441 1.02414 0.98847 1.19852 0.96594 0.94170 1.00532 1.20924 0.93532 0.97968 0.97964 1.21228 0.94881 0.98550 0.99685 1.21015 1.00086 0.93120 0.97165 1.21147 0.91805 1.00968 1.03228 1.17557 0.88829 0.86377 0.99189 1.91487 1.75341 1.59480 1.85353 1.45181 1.72883 1.13275 1.08991 1.16065 0.78536 0.85167 0.80357 1.90879 1.57628 1.14538 1.84778 1.45488 1.69798 1.13910 1.09581 1.21554 0.99946 0.94943 0.80739 1.18361 0.92145 0.92132 0.91839 1.21804 0.98627 1.00053 0.98114 1.21808 0.98163 0.99760 0.98914 1.20997 1.43860 0.96247 0.93196 0.92443 1.24871 0.95046 0.94872 0.98716 1.69806 1.44912 1.08820 1.28990 0.86579 0.78479 0.79707 0.83154 1.20735 1.21302 1.19893 0.91905 0.91520 0.92561 0.89145 0.89839 0.85224 0.85251 0.85142 0.84896 0.77697 0.77346 0.93060 0.93106 0.97591 0.89720 0.95525 0.95496 0.89691 0.97598 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.48 37.16 0.35 -1.42 16 2 C 0.17 1.99 2.56 -67.93 -0.17 1.82 16 3 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 4 C -0.09 -0.79 4.66 -27.88 -0.13 -0.92 16 5 C -0.11 -1.13 4.89 -104.55 -0.51 -1.64 16 6 C -0.09 -0.78 9.38 -39.59 -0.37 -1.15 16 7 C -0.13 -1.11 10.05 -39.57 -0.40 -1.51 16 8 C -0.10 -0.86 10.04 -39.59 -0.40 -1.26 16 9 C -0.15 -1.54 10.03 -39.51 -0.40 -1.93 16 10 C 0.10 1.13 7.24 -39.42 -0.29 0.85 16 11 F -0.14 -1.69 16.57 2.25 0.04 -1.65 16 12 N -0.75 -9.76 4.69 -58.68 -0.27 -10.03 16 13 C 0.70 12.61 8.53 -86.92 -0.74 11.87 16 14 O -0.60 -13.31 16.01 5.28 0.08 -13.23 16 15 N -0.73 -13.32 4.96 -65.22 -0.32 -13.64 16 16 C 0.15 3.30 4.50 -4.04 -0.02 3.28 16 17 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 18 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 19 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 20 C -0.50 -13.31 8.01 -34.44 -0.28 -13.59 16 21 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 22 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 23 N -0.89 -23.60 9.35 55.43 0.52 -23.08 16 24 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.74 7.79 -51.93 -0.40 0.34 16 32 H 0.08 0.57 8.05 -51.93 -0.42 0.15 16 33 H 0.13 0.90 8.03 -52.49 -0.42 0.48 16 34 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.39 4.01 8.41 -40.82 -0.34 3.67 16 38 H 0.39 6.33 6.18 -40.82 -0.25 6.08 16 39 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 42 H 0.08 2.11 6.07 -51.93 -0.32 1.79 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.08 2.11 6.07 -51.93 -0.32 1.80 16 46 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 47 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 382.75 15.07 5.77 5.77 Total: -1.00 -30.52 382.75 -9.47 -39.99 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -7.35 Total: 7.99 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -2.92 Total: -7.93 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: -0.08 Total: -46.75 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.08 Total: -13.23 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.52 -9.47 -39.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457986813.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.066 kcal (2) G-P(sol) polarization free energy of solvation -30.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds