Wall clock time and date at job start Sat Apr 11 2020 00:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46706 * 2 1 4 4 C 1.52997 * 109.47192 * 119.99994 * 2 1 3 5 5 C 1.50699 * 109.47337 * 185.00246 * 4 2 1 6 6 C 1.38263 * 119.98974 * 89.99449 * 5 4 2 7 7 C 1.38227 * 120.05156 * 179.97438 * 6 5 4 8 8 C 1.38219 * 120.02402 * 0.30685 * 7 6 5 9 9 C 1.38438 * 119.97316 * 359.46494 * 8 7 6 10 10 F 1.35104 * 120.02417 * 180.25968 * 9 8 7 11 11 C 1.38176 * 119.98501 * 270.02535 * 5 4 2 12 12 N 1.46498 * 109.46893 * 239.99802 * 2 1 3 13 13 C 1.46495 * 120.00230 * 300.00094 * 12 2 1 14 14 C 1.34777 * 119.99544 * 120.00025 * 12 2 1 15 15 O 1.21582 * 120.00643 * 359.97438 * 14 12 2 16 16 N 1.34784 * 119.99860 * 179.97438 * 14 12 2 17 17 C 1.46503 * 119.99971 * 179.97438 * 16 14 12 18 18 C 1.53005 * 109.46756 * 180.02562 * 17 16 14 19 19 C 1.52997 * 109.46680 * 180.02562 * 18 17 16 20 20 C 1.50705 * 109.46787 * 179.97438 * 19 18 17 21 21 H 1.08000 * 120.00005 * 0.02562 * 20 19 18 22 22 C 1.37878 * 119.99616 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00283 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99634 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47421 * 59.99775 * 24 22 20 26 26 H 1.48505 * 109.46975 * 180.02562 * 24 22 20 27 27 H 1.48508 * 109.47046 * 299.99755 * 24 22 20 28 28 H 1.09004 * 109.46966 * 300.00157 * 1 2 3 29 29 H 1.09003 * 109.47079 * 59.99661 * 1 2 3 30 30 H 1.08996 * 109.47216 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47330 * 64.99627 * 4 2 1 32 32 H 1.09005 * 109.46892 * 304.99696 * 4 2 1 33 33 H 1.07999 * 119.97831 * 0.02562 * 6 5 4 34 34 H 1.08002 * 119.98464 * 180.02562 * 7 6 5 35 35 H 1.08004 * 120.01020 * 179.72204 * 8 7 6 36 36 H 1.08000 * 120.01275 * 359.97066 * 11 5 4 37 37 H 1.09001 * 109.47323 * 90.00087 * 13 12 2 38 38 H 1.08997 * 109.47366 * 210.00248 * 13 12 2 39 39 H 1.09001 * 109.47017 * 329.99637 * 13 12 2 40 40 H 0.97004 * 119.99663 * 0.02562 * 16 14 12 41 41 H 1.09003 * 109.46938 * 299.99754 * 17 16 14 42 42 H 1.08997 * 109.46801 * 60.00506 * 17 16 14 43 43 H 1.08997 * 109.46850 * 299.99871 * 18 17 16 44 44 H 1.08995 * 109.47043 * 60.00061 * 18 17 16 45 45 H 1.08997 * 109.47221 * 299.99457 * 19 18 17 46 46 H 1.08995 * 109.47485 * 60.00145 * 19 18 17 47 47 H 0.97002 * 119.99698 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5420 -0.6149 1.3127 6 6 4.1323 0.4497 1.9684 7 6 5.5098 0.5483 2.0279 8 6 6.2986 -0.4142 1.4264 9 6 5.7087 -1.4831 0.7737 10 9 6.4788 -2.4272 0.1900 11 6 4.3286 -1.5810 0.7152 12 7 2.0183 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.0866 1.1285 -1.8912 16 7 3.2429 -0.6711 -3.1836 17 6 4.0847 0.0410 -4.1482 18 6 4.4543 -0.9012 -5.2957 19 6 5.3340 -0.1576 -6.3027 20 6 5.6986 -1.0858 -7.4326 21 1 5.3386 -2.1040 -7.4326 22 6 6.4910 -0.6347 -8.4669 23 7 6.9281 0.6057 -8.4676 24 14 6.9424 -1.7850 -9.8678 25 1 5.7050 -2.2536 -10.5419 26 1 7.7963 -1.0634 -10.8452 27 1 7.6854 -2.9528 -9.3295 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.7517 -1.7715 1.2056 32 1 1.6055 -0.2616 2.1370 33 1 3.5167 1.2044 2.4352 34 1 5.9697 1.3801 2.5407 35 1 7.3749 -0.3346 1.4692 36 1 3.8673 -2.4124 0.2030 37 1 0.7376 -2.1444 -1.9993 38 1 2.4628 -2.5819 -1.9863 39 1 1.5296 -2.5969 -0.4708 40 1 3.0085 -1.5998 -3.3370 41 1 3.5390 0.8979 -4.5435 42 1 4.9928 0.3853 -3.6533 43 1 4.9997 -1.7582 -4.9006 44 1 3.5460 -1.2451 -5.7903 45 1 4.7889 0.6997 -6.6978 46 1 6.2422 0.1860 -5.8078 47 1 7.4853 0.9230 -9.1955 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458297829.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:45 Heat of formation + Delta-G solvation = -64.938545 kcal Electronic energy + Delta-G solvation = -27434.643967 eV Core-core repulsion = 23531.399127 eV Total energy + Delta-G solvation = -3903.244840 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.92611 -40.41404 -39.13703 -36.77126 -35.23521 -33.65467 -32.84715 -31.41950 -30.76244 -30.33729 -27.15676 -26.89380 -26.46263 -23.37970 -22.87243 -22.23310 -21.15220 -20.55748 -19.26761 -18.08574 -17.44180 -16.57724 -16.42078 -16.33192 -16.06598 -15.79539 -15.57089 -14.66608 -14.58044 -14.47110 -14.31994 -14.03773 -13.58738 -13.56036 -13.40749 -13.18617 -12.72192 -12.53086 -12.44137 -12.24282 -12.17733 -11.94800 -11.77826 -11.73588 -11.63155 -11.17183 -10.96532 -10.86082 -10.66900 -10.59295 -9.96556 -9.82161 -9.40100 -9.12444 -9.10400 -8.93632 -8.74358 -8.43206 -8.34201 -5.98954 -4.02001 1.03294 1.08155 2.70998 3.33870 3.38418 3.38955 3.40463 3.44123 4.08255 4.11500 4.42479 4.46828 4.55228 4.70045 4.83004 4.86912 4.90167 4.97331 5.09641 5.14698 5.25198 5.27928 5.36631 5.37951 5.44788 5.48942 5.68609 5.71300 5.82386 5.85982 5.91538 5.94126 5.99004 6.15327 6.22881 6.30313 6.46085 6.60023 6.66615 6.76895 6.85207 7.06535 7.06921 7.66711 7.80227 8.00007 8.12648 8.41047 8.80136 9.04410 9.61860 11.12340 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013682 B = 0.002908 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.000007 B = 9627.333324 C =10689.688674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.157 3.843 3 H 0.106 0.894 4 C -0.093 4.093 5 C -0.047 4.047 6 C -0.125 4.125 7 C -0.088 4.088 8 C -0.159 4.159 9 C 0.101 3.899 10 F -0.140 7.140 11 C -0.144 4.144 12 N -0.629 5.629 13 C 0.076 3.924 14 C 0.705 3.295 15 O -0.590 6.590 16 N -0.741 5.741 17 C 0.135 3.865 18 C -0.120 4.120 19 C 0.025 3.975 20 C -0.522 4.522 21 H 0.054 0.946 22 C 0.057 3.943 23 N -0.894 5.894 24 Si 0.893 3.107 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.393 0.607 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.965 -4.579 25.069 28.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.053 3.947 3 H 0.124 0.876 4 C -0.132 4.132 5 C -0.047 4.047 6 C -0.143 4.143 7 C -0.106 4.106 8 C -0.177 4.177 9 C 0.082 3.918 10 F -0.118 7.118 11 C -0.163 4.163 12 N -0.368 5.368 13 C -0.068 4.068 14 C 0.406 3.594 15 O -0.468 6.468 16 N -0.397 5.397 17 C 0.012 3.988 18 C -0.158 4.158 19 C -0.013 4.013 20 C -0.561 4.561 21 H 0.073 0.927 22 C -0.144 4.144 23 N -0.533 5.533 24 Si 0.721 3.279 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.202 1.202 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.145 0.855 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.227 0.773 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.588 -3.617 25.047 27.834 hybrid contribution 0.426 -1.331 -1.142 1.804 sum -11.163 -4.948 23.906 26.843 Atomic orbital electron populations 1.22148 0.94741 1.02292 1.02667 1.20888 0.93415 0.98062 0.82319 0.87647 1.21084 0.91055 1.02238 0.98785 1.19553 0.95451 0.93837 0.95879 1.21055 0.94882 0.97935 1.00452 1.20968 0.93573 0.97897 0.98121 1.21148 1.01112 0.94774 1.00702 1.17720 0.88901 0.88283 0.96894 1.91517 1.75178 1.63006 1.82124 1.20933 0.91601 1.01315 1.02431 1.47004 1.54252 1.11976 1.23558 1.21699 1.00730 0.82336 1.02037 1.15903 0.78699 0.84761 0.80035 1.90893 1.62978 1.15497 1.77384 1.45523 1.55391 1.15534 1.23207 1.21489 0.93209 0.95509 0.88595 1.21881 1.00469 0.98203 0.95223 1.19015 0.94206 0.95565 0.92495 1.21170 1.31149 0.97773 1.05979 0.92728 1.25026 0.96022 0.95117 0.98273 1.69958 1.35281 1.15361 1.32685 0.86647 0.78423 0.80864 0.81984 1.20257 1.21274 1.20248 0.91415 0.91904 0.92339 0.90397 0.89373 0.85514 0.85127 0.84928 0.85383 0.92610 0.91457 0.90967 0.77255 0.92036 0.92116 0.92857 0.92837 0.96267 0.96275 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 9.19 37.16 0.34 -0.78 16 2 C 0.16 1.47 2.63 -67.93 -0.18 1.29 16 3 H 0.11 1.27 6.90 -51.93 -0.36 0.92 16 4 C -0.09 -0.68 4.77 -27.88 -0.13 -0.81 16 5 C -0.05 -0.47 4.95 -104.64 -0.52 -0.99 16 6 C -0.13 -1.21 9.70 -39.58 -0.38 -1.60 16 7 C -0.09 -0.87 10.04 -39.59 -0.40 -1.27 16 8 C -0.16 -1.81 10.03 -39.51 -0.40 -2.21 16 9 C 0.10 1.30 7.30 -39.42 -0.29 1.01 16 10 F -0.14 -1.98 17.27 2.25 0.04 -1.94 16 11 C -0.14 -1.64 9.29 -39.52 -0.37 -2.01 16 12 N -0.63 -6.97 2.14 -179.67 -0.38 -7.36 16 13 C 0.08 0.58 8.65 59.84 0.52 1.10 16 14 C 0.70 11.12 8.28 -86.91 -0.72 10.40 16 15 O -0.59 -11.72 15.67 5.29 0.08 -11.64 16 16 N -0.74 -11.46 5.42 -65.22 -0.35 -11.82 16 17 C 0.14 2.53 5.67 -4.04 -0.02 2.51 16 18 C -0.12 -2.43 5.27 -26.73 -0.14 -2.57 16 19 C 0.02 0.65 4.97 -27.88 -0.14 0.51 16 20 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 21 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 22 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 23 N -0.89 -27.19 13.29 55.43 0.74 -26.46 16 24 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.34 7.67 -51.93 -0.40 -0.06 16 31 H 0.08 0.47 6.42 -51.93 -0.33 0.14 16 32 H 0.09 0.47 8.09 -51.93 -0.42 0.05 16 33 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 36 H 0.13 1.31 7.43 -52.49 -0.39 0.92 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.52 6.36 -51.93 -0.33 0.19 16 39 H 0.07 0.40 6.34 -51.93 -0.33 0.07 16 40 H 0.39 5.02 6.20 -40.82 -0.25 4.76 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 388.88 15.07 5.86 5.86 Total: -1.00 -34.59 388.88 -9.70 -44.29 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -7.43 Total: 1.33 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -3.24 Total: -9.01 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.00 Total: -45.63 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.08 Total: -11.64 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.59 -9.70 -44.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458297829.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.645 kcal (2) G-P(sol) polarization free energy of solvation -34.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds