Wall clock time and date at job start Sat Apr 11 2020 00:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46706 * 2 1 4 4 C 1.52997 * 109.47192 * 119.99994 * 2 1 3 5 5 C 1.50699 * 109.47337 * 185.00246 * 4 2 1 6 6 C 1.38263 * 119.98974 * 89.99449 * 5 4 2 7 7 C 1.38227 * 120.05156 * 179.97438 * 6 5 4 8 8 C 1.38219 * 120.02402 * 0.30685 * 7 6 5 9 9 C 1.38438 * 119.97316 * 359.46494 * 8 7 6 10 10 F 1.35104 * 120.02417 * 180.25968 * 9 8 7 11 11 C 1.38176 * 119.98501 * 270.02535 * 5 4 2 12 12 N 1.46498 * 109.46893 * 239.99802 * 2 1 3 13 13 C 1.46495 * 120.00230 * 300.00094 * 12 2 1 14 14 C 1.34777 * 119.99544 * 120.00025 * 12 2 1 15 15 O 1.21582 * 120.00643 * 359.97438 * 14 12 2 16 16 N 1.34784 * 119.99860 * 179.97438 * 14 12 2 17 17 C 1.46503 * 119.99971 * 179.97438 * 16 14 12 18 18 C 1.53005 * 109.46756 * 180.02562 * 17 16 14 19 19 C 1.52997 * 109.46680 * 180.02562 * 18 17 16 20 20 C 1.50705 * 109.46787 * 179.97438 * 19 18 17 21 21 H 1.08000 * 120.00005 * 0.02562 * 20 19 18 22 22 C 1.37878 * 119.99616 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00283 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99634 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47421 * 59.99775 * 24 22 20 26 26 H 1.48505 * 109.46975 * 180.02562 * 24 22 20 27 27 H 1.48508 * 109.47046 * 299.99755 * 24 22 20 28 28 H 1.09004 * 109.46966 * 300.00157 * 1 2 3 29 29 H 1.09003 * 109.47079 * 59.99661 * 1 2 3 30 30 H 1.08996 * 109.47216 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47330 * 64.99627 * 4 2 1 32 32 H 1.09005 * 109.46892 * 304.99696 * 4 2 1 33 33 H 1.07999 * 119.97831 * 0.02562 * 6 5 4 34 34 H 1.08002 * 119.98464 * 180.02562 * 7 6 5 35 35 H 1.08004 * 120.01020 * 179.72204 * 8 7 6 36 36 H 1.08000 * 120.01275 * 359.97066 * 11 5 4 37 37 H 1.09001 * 109.47323 * 90.00087 * 13 12 2 38 38 H 1.08997 * 109.47366 * 210.00248 * 13 12 2 39 39 H 1.09001 * 109.47017 * 329.99637 * 13 12 2 40 40 H 0.97004 * 119.99663 * 0.02562 * 16 14 12 41 41 H 1.09003 * 109.46938 * 299.99754 * 17 16 14 42 42 H 1.08997 * 109.46801 * 60.00506 * 17 16 14 43 43 H 1.08997 * 109.46850 * 299.99871 * 18 17 16 44 44 H 1.08995 * 109.47043 * 60.00061 * 18 17 16 45 45 H 1.08997 * 109.47221 * 299.99457 * 19 18 17 46 46 H 1.08995 * 109.47485 * 60.00145 * 19 18 17 47 47 H 0.97002 * 119.99698 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5420 -0.6149 1.3127 6 6 4.1323 0.4497 1.9684 7 6 5.5098 0.5483 2.0279 8 6 6.2986 -0.4142 1.4264 9 6 5.7087 -1.4831 0.7737 10 9 6.4788 -2.4272 0.1900 11 6 4.3286 -1.5810 0.7152 12 7 2.0183 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.0866 1.1285 -1.8912 16 7 3.2429 -0.6711 -3.1836 17 6 4.0847 0.0410 -4.1482 18 6 4.4543 -0.9012 -5.2957 19 6 5.3340 -0.1576 -6.3027 20 6 5.6986 -1.0858 -7.4326 21 1 5.3386 -2.1040 -7.4326 22 6 6.4910 -0.6347 -8.4669 23 7 6.9281 0.6057 -8.4676 24 14 6.9424 -1.7850 -9.8678 25 1 5.7050 -2.2536 -10.5419 26 1 7.7963 -1.0634 -10.8452 27 1 7.6854 -2.9528 -9.3295 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.7517 -1.7715 1.2056 32 1 1.6055 -0.2616 2.1370 33 1 3.5167 1.2044 2.4352 34 1 5.9697 1.3801 2.5407 35 1 7.3749 -0.3346 1.4692 36 1 3.8673 -2.4124 0.2030 37 1 0.7376 -2.1444 -1.9993 38 1 2.4628 -2.5819 -1.9863 39 1 1.5296 -2.5969 -0.4708 40 1 3.0085 -1.5998 -3.3370 41 1 3.5390 0.8979 -4.5435 42 1 4.9928 0.3853 -3.6533 43 1 4.9997 -1.7582 -4.9006 44 1 3.5460 -1.2451 -5.7903 45 1 4.7889 0.6997 -6.6978 46 1 6.2422 0.1860 -5.8078 47 1 7.4853 0.9230 -9.1955 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458297829.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:44 Heat of formation + Delta-G solvation = -84.630494 kcal Electronic energy + Delta-G solvation = -27435.497874 eV Core-core repulsion = 23531.399127 eV Total energy + Delta-G solvation = -3904.098747 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.92640 -41.44880 -40.03062 -37.78346 -36.78044 -35.30163 -34.10779 -32.79149 -31.79292 -31.23459 -28.54271 -27.72577 -27.52529 -25.11352 -23.71200 -23.18800 -22.32596 -22.13227 -20.29373 -19.20316 -18.49317 -18.29434 -17.49377 -17.24560 -17.12167 -16.93027 -16.61297 -16.50692 -15.90891 -15.70993 -15.32603 -14.97312 -14.57258 -14.54759 -14.28237 -14.25122 -14.01895 -13.77612 -13.46732 -13.32065 -13.24779 -13.12344 -12.82050 -12.72588 -12.66038 -12.54152 -12.42671 -12.39329 -11.88350 -11.69844 -11.68622 -11.57284 -11.27886 -11.07643 -10.55823 -10.20842 -9.91116 -9.70431 -9.36712 -8.20014 -6.32006 0.19623 0.27257 1.40635 1.44272 1.51998 1.67863 2.18632 2.41331 2.61751 3.03185 3.13412 3.27808 3.68137 3.84167 3.99464 4.09721 4.13614 4.19177 4.23385 4.26150 4.27360 4.41167 4.44083 4.52308 4.66010 4.69780 4.78202 4.87494 4.92511 4.93727 4.95306 5.04332 5.08712 5.13077 5.17045 5.19526 5.35466 5.37977 5.46162 5.52514 5.53651 5.68434 5.68796 5.82373 5.96655 5.99225 6.21192 6.84498 7.00614 7.37480 7.60213 8.92081 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013682 B = 0.002908 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.000007 B = 9627.333324 C =10689.688674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.153 3.847 3 H 0.073 0.927 4 C -0.085 4.085 5 C -0.053 4.053 6 C -0.130 4.130 7 C -0.094 4.094 8 C -0.175 4.175 9 C 0.066 3.934 10 F -0.156 7.156 11 C -0.153 4.153 12 N -0.619 5.619 13 C 0.066 3.934 14 C 0.699 3.301 15 O -0.638 6.638 16 N -0.734 5.734 17 C 0.152 3.848 18 C -0.099 4.099 19 C 0.025 3.975 20 C -0.543 4.543 21 H 0.067 0.933 22 C -0.003 4.003 23 N -0.935 5.935 24 Si 0.969 3.031 25 H -0.264 1.264 26 H -0.285 1.285 27 H -0.266 1.266 28 H 0.088 0.912 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.152 0.848 34 H 0.154 0.846 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.408 0.592 41 H 0.046 0.954 42 H 0.038 0.962 43 H 0.063 0.937 44 H 0.069 0.931 45 H -0.007 1.007 46 H -0.011 1.011 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.156 -6.620 26.175 30.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.050 3.950 3 H 0.092 0.908 4 C -0.123 4.123 5 C -0.054 4.054 6 C -0.148 4.148 7 C -0.112 4.112 8 C -0.194 4.194 9 C 0.047 3.953 10 F -0.135 7.135 11 C -0.172 4.172 12 N -0.356 5.356 13 C -0.076 4.076 14 C 0.400 3.600 15 O -0.520 6.520 16 N -0.391 5.391 17 C 0.027 3.973 18 C -0.137 4.137 19 C -0.012 4.012 20 C -0.581 4.581 21 H 0.085 0.915 22 C -0.201 4.201 23 N -0.575 5.575 24 Si 0.793 3.207 25 H -0.189 1.189 26 H -0.211 1.211 27 H -0.191 1.191 28 H 0.107 0.893 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.135 0.865 33 H 0.170 0.830 34 H 0.172 0.828 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.120 0.880 40 H 0.246 0.754 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.011 0.989 46 H 0.008 0.992 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.829 -5.721 26.192 30.167 hybrid contribution 1.075 -0.635 -1.405 1.879 sum -12.754 -6.356 24.788 28.592 Atomic orbital electron populations 1.22089 0.92439 1.03662 1.02791 1.21050 0.95043 0.96612 0.82336 0.90835 1.21131 0.88946 1.03576 0.98612 1.19942 0.97047 0.93284 0.95089 1.21489 0.95119 0.98269 0.99908 1.21329 0.94019 0.98060 0.97776 1.21388 1.01843 0.95057 1.01109 1.18137 0.89807 0.88928 0.98433 1.91463 1.75695 1.63674 1.82637 1.21142 0.91123 1.02154 1.02733 1.47080 1.52518 1.13196 1.22807 1.22004 1.01331 0.80183 1.04109 1.16110 0.79096 0.84345 0.80464 1.90858 1.64870 1.17785 1.78458 1.45200 1.55022 1.16077 1.22817 1.21006 0.92700 0.94949 0.88623 1.21574 1.00008 0.97798 0.94318 1.18920 0.93712 0.95159 0.93441 1.21642 1.31219 0.98554 1.06639 0.91519 1.26044 0.95865 0.96811 1.01386 1.70113 1.36084 1.17552 1.33789 0.85451 0.78534 0.78583 0.78173 1.18851 1.21077 1.19086 0.89278 0.93864 0.90261 0.88246 0.86503 0.83019 0.82809 0.84405 0.84492 0.91055 0.91533 0.87987 0.75439 0.93561 0.94338 0.91807 0.91224 0.98869 0.99247 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.19 71.98 0.66 -0.98 16 2 C 0.15 2.52 2.63 44.99 0.12 2.64 16 3 H 0.07 1.73 6.90 -2.39 -0.02 1.71 16 4 C -0.08 -0.95 4.77 29.85 0.14 -0.80 16 5 C -0.05 -0.97 4.95 -19.87 -0.10 -1.07 16 6 C -0.13 -2.32 9.70 22.27 0.22 -2.10 16 7 C -0.09 -1.82 10.04 22.26 0.22 -1.59 16 8 C -0.18 -4.12 10.03 22.31 0.22 -3.89 16 9 C 0.07 1.74 7.30 22.37 0.16 1.91 16 10 F -0.16 -4.63 17.27 44.97 0.78 -3.85 16 11 C -0.15 -3.38 9.29 22.31 0.21 -3.17 16 12 N -0.62 -12.66 2.14 -840.63 -1.80 -14.46 16 13 C 0.07 0.80 8.65 127.77 1.10 1.91 16 14 C 0.70 22.00 8.28 179.05 1.48 23.48 16 15 O -0.64 -26.16 15.67 -3.98 -0.06 -26.23 16 16 N -0.73 -22.55 5.42 -478.51 -2.59 -25.15 16 17 C 0.15 5.88 5.67 86.38 0.49 6.37 16 18 C -0.10 -4.04 5.27 30.60 0.16 -3.88 16 19 C 0.03 1.37 4.97 29.85 0.15 1.52 16 20 C -0.54 -31.03 9.11 25.60 0.23 -30.80 16 21 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 22 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 23 N -0.94 -58.25 13.29 21.45 0.28 -57.97 16 24 Si 0.97 44.51 29.54 68.60 2.03 46.53 16 25 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 26 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 27 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 28 H 0.09 0.61 8.14 -2.39 -0.02 0.60 16 29 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.08 0.55 7.67 -2.39 -0.02 0.54 16 31 H 0.10 0.72 6.42 -2.39 -0.02 0.71 16 32 H 0.12 0.70 8.09 -2.38 -0.02 0.68 16 33 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 34 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 35 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 36 H 0.14 2.61 7.43 -2.91 -0.02 2.59 16 37 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 38 H 0.07 0.85 6.36 -2.39 -0.02 0.84 16 39 H 0.10 0.68 6.34 -2.39 -0.02 0.66 16 40 H 0.41 9.84 6.20 -92.71 -0.58 9.27 16 41 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 45 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 46 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 47 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -78.85 388.88 4.96 -73.89 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.39 Total: 17.43 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: 5.94 Total: -10.20 kcal Atomic # 7 Polarization: -93.47 SS G_CDS: -4.11 Total: -97.57 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.06 Total: -26.23 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.78 Total: -3.85 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -78.85 4.96 -73.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458297829.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.737 kcal (2) G-P(sol) polarization free energy of solvation -78.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds