Wall clock time and date at job start Sat Apr 11 2020 00:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46875 * 2 1 4 4 C 1.50703 * 109.47132 * 240.00114 * 2 1 3 5 5 C 1.38218 * 120.01017 * 343.80961 * 4 2 1 6 6 C 1.38229 * 120.02249 * 180.02562 * 5 4 2 7 7 C 1.38274 * 120.04937 * 0.02562 * 6 5 4 8 8 C 1.38178 * 120.02528 * 359.70672 * 7 6 5 9 9 C 1.38440 * 120.01016 * 163.82775 * 4 2 1 10 10 F 1.35097 * 120.02701 * 359.95904 * 9 4 2 11 11 N 1.46492 * 109.47221 * 120.00131 * 2 1 3 12 12 C 1.46501 * 120.00142 * 65.19785 * 11 2 1 13 13 C 1.34776 * 119.99952 * 245.19949 * 11 2 1 14 14 O 1.21581 * 120.00103 * 359.97438 * 13 11 2 15 15 N 1.34787 * 119.99825 * 179.97438 * 13 11 2 16 16 C 1.46507 * 119.99659 * 179.97438 * 15 13 11 17 17 C 1.53001 * 109.46663 * 180.02562 * 16 15 13 18 18 C 1.52998 * 109.46969 * 299.99949 * 17 16 15 19 19 C 1.52995 * 109.47070 * 60.00025 * 17 16 15 20 20 C 1.50697 * 109.46865 * 180.02562 * 17 16 15 21 21 H 1.08003 * 120.00359 * 359.97438 * 20 17 16 22 22 C 1.37878 * 120.00363 * 179.97438 * 20 17 16 23 23 N 1.31516 * 119.99343 * 0.02562 * 22 20 17 24 24 Si 1.86792 * 120.00220 * 179.97438 * 22 20 17 25 25 H 1.48504 * 109.47163 * 90.00128 * 24 22 20 26 26 H 1.48502 * 109.47379 * 209.99879 * 24 22 20 27 27 H 1.48497 * 109.47625 * 329.99872 * 24 22 20 28 28 H 1.08997 * 109.47081 * 59.99830 * 1 2 3 29 29 H 1.09002 * 109.46875 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47237 * 299.99802 * 1 2 3 31 31 H 1.07995 * 119.99062 * 359.97438 * 5 4 2 32 32 H 1.07996 * 119.97712 * 180.02562 * 6 5 4 33 33 H 1.08001 * 119.98362 * 179.97438 * 7 6 5 34 34 H 1.08000 * 120.00955 * 180.27073 * 8 7 6 35 35 H 1.09005 * 109.47204 * 95.24584 * 12 11 2 36 36 H 1.09001 * 109.47187 * 215.24399 * 12 11 2 37 37 H 1.08996 * 109.47098 * 335.24388 * 12 11 2 38 38 H 0.96996 * 120.00267 * 0.02562 * 15 13 11 39 39 H 1.08994 * 109.46932 * 299.99838 * 16 15 13 40 40 H 1.08999 * 109.46821 * 60.00350 * 16 15 13 41 41 H 1.08994 * 109.47454 * 60.00281 * 18 17 16 42 42 H 1.09007 * 109.46789 * 180.02562 * 18 17 16 43 43 H 1.08997 * 109.47212 * 300.00068 * 18 17 16 44 44 H 1.09002 * 109.47429 * 59.99988 * 19 17 16 45 45 H 1.09007 * 109.46875 * 179.97438 * 19 17 16 46 46 H 1.08994 * 109.47150 * 299.99594 * 19 17 16 47 47 H 0.97001 * 119.99762 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 1.1791 -1.5168 -1.9599 6 6 1.6398 -2.1690 -3.0883 7 6 2.9545 -2.0158 -3.4883 8 6 3.8077 -1.2057 -2.7638 9 6 3.3487 -0.5557 -1.6304 10 9 4.1834 0.2326 -0.9185 11 7 2.0184 -0.6906 1.1961 12 6 1.7608 -2.1220 1.3720 13 6 2.7046 -0.0091 2.1347 14 8 2.9187 1.1788 1.9886 15 7 3.1534 -0.6444 3.2355 16 6 3.8999 0.0963 4.2556 17 6 4.2906 -0.8521 5.3907 18 6 3.0273 -1.4478 6.0152 19 6 5.1651 -1.9783 4.8361 20 6 5.0579 -0.0901 6.4403 21 1 5.2482 0.9651 6.3105 22 6 5.5170 -0.7399 7.5664 23 7 5.2856 -2.0249 7.7242 24 14 6.4686 0.2045 8.8670 25 1 5.5227 0.7527 9.8720 26 1 7.4294 -0.7079 9.5376 27 1 7.2103 1.3197 8.2256 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.1524 -1.6382 -1.6477 32 1 0.9724 -2.7986 -3.6579 33 1 3.3134 -2.5262 -4.3699 34 1 4.8334 -1.0828 -3.0789 35 1 2.6185 -2.6921 1.0148 36 1 1.5976 -2.3347 2.4285 37 1 0.8747 -2.4043 0.8035 38 1 2.9829 -1.5921 3.3519 39 1 4.8001 0.5203 3.8107 40 1 3.2769 0.8989 4.6504 41 1 2.4719 -1.9989 5.2563 42 1 3.3057 -2.1232 6.8242 43 1 2.4042 -0.6455 6.4103 44 1 6.0652 -1.5540 4.3911 45 1 5.4439 -2.6538 5.6449 46 1 4.6098 -2.5294 4.0772 47 1 5.6083 -2.4820 8.5166 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459256432.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:53 Heat of formation + Delta-G solvation = -63.205520 kcal Electronic energy + Delta-G solvation = -28170.908794 eV Core-core repulsion = 24267.739104 eV Total energy + Delta-G solvation = -3903.169690 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.90283 -41.47926 -40.05069 -38.34509 -37.00961 -35.18272 -33.63695 -32.31362 -31.40024 -30.05941 -27.93440 -27.58941 -27.47642 -26.72389 -24.98008 -23.34400 -22.39380 -20.68488 -20.63740 -19.31497 -18.62575 -17.86021 -17.53737 -17.27536 -16.95897 -16.64373 -16.50892 -16.36078 -15.55395 -15.26578 -15.10024 -14.99211 -14.74433 -14.55294 -14.17782 -14.08696 -13.94958 -13.39841 -13.25988 -13.19793 -13.16132 -13.09855 -12.91207 -12.83156 -12.70052 -12.60226 -12.27025 -12.14328 -11.94878 -11.88721 -11.50957 -11.34959 -11.13820 -10.72927 -10.41084 -10.13235 -9.96059 -9.65428 -9.48486 -8.03406 -6.19035 0.13837 0.26685 1.42006 1.44326 1.53099 1.73644 2.16403 2.45114 2.70387 3.10630 3.20029 3.36543 3.51414 3.76087 4.07668 4.18787 4.22524 4.28184 4.39329 4.41194 4.44396 4.49575 4.59398 4.67760 4.72203 4.80460 4.89945 4.97653 4.98605 5.02825 5.08735 5.11360 5.17167 5.17450 5.33054 5.35713 5.38962 5.49120 5.56938 5.62404 5.64881 5.66154 5.94187 5.98110 6.12585 6.19498 6.42411 6.84352 7.01300 7.48437 7.58980 8.95903 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023509 B = 0.002896 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.752058 B = 9666.599558 C = 9856.574145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.190 3.810 3 H 0.069 0.931 4 C -0.141 4.141 5 C -0.076 4.076 6 C -0.122 4.122 7 C -0.084 4.084 8 C -0.168 4.168 9 C 0.073 3.927 10 F -0.162 7.162 11 N -0.621 5.621 12 C 0.074 3.926 13 C 0.695 3.305 14 O -0.639 6.639 15 N -0.725 5.725 16 C 0.168 3.832 17 C 0.053 3.947 18 C -0.117 4.117 19 C -0.117 4.117 20 C -0.531 4.531 21 H 0.043 0.957 22 C 0.030 3.970 23 N -0.898 5.898 24 Si 0.946 3.054 25 H -0.277 1.277 26 H -0.281 1.281 27 H -0.278 1.278 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.050 0.950 31 H 0.166 0.834 32 H 0.167 0.833 33 H 0.161 0.839 34 H 0.137 0.863 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.109 0.891 38 H 0.404 0.596 39 H 0.028 0.972 40 H 0.035 0.965 41 H 0.034 0.966 42 H 0.065 0.935 43 H 0.018 0.982 44 H 0.014 0.986 45 H 0.065 0.935 46 H 0.032 0.968 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.265 -6.857 -23.207 27.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.087 3.913 3 H 0.087 0.913 4 C -0.143 4.143 5 C -0.094 4.094 6 C -0.140 4.140 7 C -0.102 4.102 8 C -0.187 4.187 9 C 0.054 3.946 10 F -0.141 7.141 11 N -0.357 5.357 12 C -0.068 4.068 13 C 0.396 3.604 14 O -0.521 6.521 15 N -0.382 5.382 16 C 0.043 3.957 17 C 0.053 3.947 18 C -0.175 4.175 19 C -0.175 4.175 20 C -0.569 4.569 21 H 0.061 0.939 22 C -0.170 4.170 23 N -0.537 5.537 24 Si 0.773 3.227 25 H -0.203 1.203 26 H -0.206 1.206 27 H -0.203 1.203 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.183 0.817 32 H 0.184 0.816 33 H 0.179 0.821 34 H 0.154 0.846 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.127 0.873 38 H 0.242 0.758 39 H 0.046 0.954 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.084 0.916 43 H 0.037 0.963 44 H 0.033 0.967 45 H 0.084 0.916 46 H 0.051 0.949 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.035 -6.135 -23.111 26.769 hybrid contribution 1.337 0.734 1.354 2.040 sum -10.698 -5.400 -21.757 24.839 Atomic orbital electron populations 1.22176 0.91342 1.04191 1.03186 1.19670 0.96015 0.95311 0.80349 0.91259 1.20236 0.92709 1.02512 0.98865 1.21412 1.00485 0.93445 0.94096 1.21667 0.96058 0.99682 0.96616 1.21446 0.93486 0.95843 0.99440 1.21395 1.02352 0.99994 0.94978 1.18252 0.88797 0.94485 0.93101 1.91502 1.71695 1.72689 1.78186 1.47101 1.57928 1.10635 1.20076 1.21892 1.02960 0.78895 1.03010 1.16201 0.78751 0.84727 0.80672 1.90829 1.65249 1.16090 1.79963 1.45324 1.58991 1.13427 1.20423 1.21122 0.92748 0.94349 0.87448 1.18345 0.93517 0.92294 0.90577 1.21639 0.95978 0.99465 1.00415 1.21643 0.97744 0.99182 0.98944 1.21258 1.35536 0.95244 1.04884 0.93908 1.25444 0.96553 0.95712 0.99322 1.69901 1.46489 1.09001 1.28319 0.85741 0.78745 0.78647 0.79567 1.20316 1.20613 1.20284 0.89196 0.89056 0.93041 0.81715 0.81592 0.82111 0.84554 0.92948 0.91088 0.87292 0.75781 0.95352 0.94676 0.94668 0.91639 0.96271 0.96698 0.91571 0.94865 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 8.11 71.98 0.58 -1.91 16 2 C 0.19 4.84 2.54 44.25 0.11 4.95 16 3 H 0.07 2.36 6.82 -2.39 -0.02 2.34 16 4 C -0.14 -3.02 4.69 -19.82 -0.09 -3.11 16 5 C -0.08 -0.95 9.10 22.26 0.20 -0.75 16 6 C -0.12 -1.15 10.05 22.28 0.22 -0.93 16 7 C -0.08 -1.00 10.04 22.26 0.22 -0.78 16 8 C -0.17 -3.25 10.03 22.31 0.22 -3.02 16 9 C 0.07 1.91 7.25 22.38 0.16 2.08 16 10 F -0.16 -5.78 16.74 44.97 0.75 -5.02 16 11 N -0.62 -17.93 2.75 -844.84 -2.33 -20.26 16 12 C 0.07 1.50 9.26 127.77 1.18 2.68 16 13 C 0.70 27.50 8.28 179.05 1.48 28.98 16 14 O -0.64 -31.03 15.68 -3.97 -0.06 -31.09 16 15 N -0.73 -28.29 4.83 -478.52 -2.31 -30.60 16 16 C 0.17 7.82 4.50 86.38 0.39 8.21 16 17 C 0.05 2.59 0.50 -52.93 -0.03 2.56 16 18 C -0.12 -5.35 8.08 71.98 0.58 -4.77 16 19 C -0.12 -5.47 8.08 71.98 0.58 -4.89 16 20 C -0.53 -29.13 8.01 25.60 0.21 -28.93 16 21 H 0.04 2.41 7.74 -2.91 -0.02 2.39 16 22 C 0.03 1.59 5.15 84.65 0.44 2.03 16 23 N -0.90 -48.56 9.35 21.45 0.20 -48.36 16 24 Si 0.95 43.55 29.54 68.60 2.03 45.58 16 25 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 26 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 27 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 28 H 0.09 1.13 8.12 -2.39 -0.02 1.11 16 29 H 0.09 0.95 5.57 -2.39 -0.01 0.94 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.17 1.05 5.96 -2.91 -0.02 1.03 16 32 H 0.17 0.39 8.06 -2.91 -0.02 0.37 16 33 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 34 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.07 1.41 6.65 -2.39 -0.02 1.39 16 37 H 0.11 1.38 6.74 -2.39 -0.02 1.36 16 38 H 0.40 13.73 4.01 -92.71 -0.37 13.35 16 39 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.03 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.03 1.35 6.86 -2.39 -0.02 1.33 16 42 H 0.06 3.28 6.07 -2.38 -0.01 3.27 16 43 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.07 3.36 6.07 -2.38 -0.01 3.35 16 46 H 0.03 1.31 6.86 -2.39 -0.02 1.30 16 47 H 0.26 13.53 8.31 -92.71 -0.77 12.76 16 Total: -1.00 -72.32 372.69 5.36 -66.96 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.61 Total: 20.40 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 6.47 Total: 2.39 kcal Atomic # 7 Polarization: -94.78 SS G_CDS: -4.43 Total: -99.22 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.06 Total: -31.09 kcal Atomic # 9 Polarization: -5.78 SS G_CDS: 0.75 Total: -5.02 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -72.32 5.36 -66.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459256432.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.757 kcal (2) G-P(sol) polarization free energy of solvation -72.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds