Wall clock time and date at job start Sat Apr 11 2020 00:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47171 * 2 1 4 4 C 1.50704 * 109.46962 * 119.99350 * 2 1 3 5 5 C 1.38221 * 120.01026 * 16.04035 * 4 2 1 6 6 C 1.38220 * 120.02095 * 179.71820 * 5 4 2 7 7 C 1.38272 * 120.05501 * 0.55952 * 6 5 4 8 8 C 1.38171 * 120.02242 * 359.72217 * 7 6 5 9 9 C 1.38436 * 120.01352 * 196.31993 * 4 2 1 10 10 F 1.35101 * 120.02605 * 0.02562 * 9 4 2 11 11 N 1.46495 * 109.47554 * 239.99380 * 2 1 3 12 12 C 1.46499 * 119.99971 * 303.88113 * 11 2 1 13 13 C 1.34781 * 120.00079 * 123.87936 * 11 2 1 14 14 O 1.21594 * 119.99848 * 0.02562 * 13 11 2 15 15 N 1.34774 * 120.00269 * 179.72372 * 13 11 2 16 16 C 1.46493 * 120.00031 * 180.27734 * 15 13 11 17 17 C 1.53004 * 109.47211 * 180.02562 * 16 15 13 18 18 C 1.52996 * 109.47030 * 300.00312 * 17 16 15 19 19 C 1.53005 * 109.46875 * 59.99822 * 17 16 15 20 20 C 1.50697 * 109.47270 * 180.02562 * 17 16 15 21 21 H 1.08000 * 120.00051 * 359.97438 * 20 17 16 22 22 C 1.37882 * 120.00028 * 180.02562 * 20 17 16 23 23 N 1.31518 * 119.99628 * 359.97438 * 22 20 17 24 24 Si 1.86794 * 119.99986 * 179.97438 * 22 20 17 25 25 H 1.48495 * 109.47394 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.46960 * 120.00298 * 24 22 20 27 27 H 1.48502 * 109.46873 * 239.99796 * 24 22 20 28 28 H 1.08998 * 109.46696 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47696 * 300.00487 * 1 2 3 30 30 H 1.09004 * 109.46841 * 60.00434 * 1 2 3 31 31 H 1.07992 * 119.98944 * 0.02562 * 5 4 2 32 32 H 1.08005 * 119.97218 * 180.27969 * 6 5 4 33 33 H 1.07998 * 119.98973 * 179.74540 * 7 6 5 34 34 H 1.07998 * 120.01345 * 180.02562 * 8 7 6 35 35 H 1.08991 * 109.47094 * 264.87786 * 12 11 2 36 36 H 1.08997 * 109.46824 * 24.88049 * 12 11 2 37 37 H 1.09000 * 109.47004 * 144.87828 * 12 11 2 38 38 H 0.97003 * 119.99359 * 0.28392 * 15 13 11 39 39 H 1.08999 * 109.47265 * 300.00095 * 16 15 13 40 40 H 1.08996 * 109.47327 * 60.00354 * 16 15 13 41 41 H 1.09000 * 109.47318 * 59.99513 * 18 17 16 42 42 H 1.08996 * 109.47178 * 179.97438 * 18 17 16 43 43 H 1.09004 * 109.47244 * 299.99483 * 18 17 16 44 44 H 1.08999 * 109.47103 * 60.00397 * 19 17 16 45 45 H 1.09004 * 109.46843 * 179.97438 * 19 17 16 46 46 H 1.09000 * 109.47150 * 300.00289 * 19 17 16 47 47 H 0.96998 * 119.99376 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 1.1782 -1.5142 1.9618 6 6 1.6402 -2.1704 3.0872 7 6 2.9539 -2.0144 3.4894 8 6 3.8079 -1.2066 2.7633 9 6 3.3477 -0.5532 1.6323 10 9 4.1818 0.2372 0.9218 11 7 2.0184 -0.6907 -1.1960 12 6 1.5958 -2.0661 -1.4715 13 6 2.8565 -0.0608 -2.0430 14 8 3.2076 1.0806 -1.8141 15 7 3.3103 -0.6981 -3.1404 16 6 4.2261 -0.0155 -4.0577 17 6 4.5846 -0.9534 -5.2122 18 6 5.2600 -2.2093 -4.6580 19 6 3.3111 -1.3482 -5.9628 20 6 5.5271 -0.2514 -6.1555 21 1 5.8389 0.7624 -5.9522 22 6 5.9906 -0.9031 -7.2788 23 7 5.6105 -2.1376 -7.5265 24 14 7.1583 -0.0328 -8.4484 25 1 7.4302 1.3384 -7.9473 26 1 8.4325 -0.7908 -8.5308 27 1 6.5410 0.0457 -9.7967 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 0.1509 -1.6336 1.6510 32 1 0.9733 -2.8020 3.6554 33 1 3.3126 -2.5243 4.3712 34 1 4.8340 -1.0852 3.0774 35 1 2.3427 -2.7598 -1.0857 36 1 0.6384 -2.2561 -0.9863 37 1 1.4918 -2.2056 -2.5475 38 1 3.0304 -1.6088 -3.3228 39 1 3.7447 0.8790 -4.4529 40 1 5.1331 0.2661 -3.5229 41 1 4.5786 -2.7172 -3.9754 42 1 5.5150 -2.8777 -5.4804 43 1 6.1673 -1.9281 -4.1233 44 1 2.8299 -0.4534 -6.3576 45 1 3.5666 -2.0160 -6.7856 46 1 2.6297 -1.8561 -5.2802 47 1 5.9368 -2.5961 -8.3165 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459256433.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:57 Heat of formation + Delta-G solvation = -45.303796 kcal Electronic energy + Delta-G solvation = -28226.989951 eV Core-core repulsion = 24324.596538 eV Total energy + Delta-G solvation = -3902.393413 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.78248 -40.20755 -39.04407 -36.71419 -35.68128 -33.53051 -32.31463 -30.76857 -30.49771 -29.22275 -26.97559 -25.68851 -25.60380 -24.98210 -23.89103 -22.57056 -21.26994 -19.37695 -18.81600 -17.92715 -17.73469 -16.47908 -16.30599 -15.99148 -15.70806 -15.34092 -15.20518 -14.71247 -14.35817 -14.14507 -14.02762 -13.61759 -13.40811 -13.09128 -12.84529 -12.58701 -12.53141 -12.45306 -12.31716 -12.21589 -12.07747 -12.00225 -11.36370 -11.16777 -11.14119 -11.06470 -10.84449 -10.62493 -10.34702 -10.17052 -9.70947 -9.59122 -9.29246 -9.18235 -8.83038 -8.74216 -8.61806 -8.37817 -8.10066 -5.99153 -4.08611 0.91721 1.00290 2.94494 3.29501 3.37943 3.43230 3.49153 3.67250 4.16330 4.34947 4.41971 4.48255 4.57890 4.71405 4.90785 5.02189 5.09334 5.13599 5.16038 5.27749 5.43564 5.47564 5.62274 5.71192 5.79591 5.83610 5.88522 6.02872 6.11496 6.16499 6.26841 6.42383 6.54748 6.63504 6.70899 6.85309 6.86269 6.96677 7.07571 7.16619 7.29836 7.43836 7.59640 7.73274 8.04747 8.16161 8.41701 8.48788 8.91635 9.10424 9.56971 11.02396 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.022646 B = 0.002960 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.105805 B = 9457.264584 C = 9716.976051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.195 3.805 3 H 0.113 0.887 4 C -0.133 4.133 5 C -0.084 4.084 6 C -0.137 4.137 7 C -0.091 4.091 8 C -0.160 4.160 9 C 0.120 3.880 10 F -0.123 7.123 11 N -0.630 5.630 12 C 0.080 3.920 13 C 0.700 3.300 14 O -0.591 6.591 15 N -0.731 5.731 16 C 0.150 3.850 17 C 0.056 3.944 18 C -0.129 4.129 19 C -0.129 4.129 20 C -0.503 4.503 21 H 0.058 0.942 22 C 0.065 3.935 23 N -0.887 5.887 24 Si 0.893 3.107 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.285 1.285 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.135 0.865 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.134 0.866 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.393 0.607 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.004 0.996 42 H 0.085 0.915 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.085 0.915 46 H 0.004 0.996 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.572 -3.671 20.113 23.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.091 3.909 3 H 0.131 0.869 4 C -0.135 4.135 5 C -0.103 4.103 6 C -0.155 4.155 7 C -0.109 4.109 8 C -0.179 4.179 9 C 0.100 3.900 10 F -0.102 7.102 11 N -0.368 5.368 12 C -0.064 4.064 13 C 0.402 3.598 14 O -0.469 6.469 15 N -0.387 5.387 16 C 0.027 3.973 17 C 0.055 3.945 18 C -0.186 4.186 19 C -0.186 4.186 20 C -0.542 4.542 21 H 0.077 0.923 22 C -0.136 4.136 23 N -0.526 5.526 24 Si 0.721 3.279 25 H -0.197 1.197 26 H -0.211 1.211 27 H -0.211 1.211 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.153 0.847 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.152 0.848 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.229 0.771 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.023 0.977 42 H 0.103 0.897 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.104 0.896 46 H 0.023 0.977 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.217 -2.921 20.039 23.150 hybrid contribution 0.736 -0.066 -0.809 1.096 sum -10.481 -2.987 19.230 22.104 Atomic orbital electron populations 1.22214 0.94326 1.02354 1.02983 1.19561 0.93743 0.97278 0.80356 0.86934 1.20366 0.92885 1.01335 0.98917 1.21072 0.99770 0.94978 0.94464 1.21175 0.96013 1.00791 0.97546 1.21011 0.93455 0.97229 0.99203 1.21205 1.01423 0.99712 0.95571 1.17710 0.88094 0.92676 0.91480 1.91622 1.70461 1.71025 1.77048 1.47044 1.50699 1.14801 1.24275 1.21649 1.00321 0.82890 1.01533 1.16003 0.79002 0.84629 0.80198 1.90874 1.62665 1.17284 1.76088 1.45614 1.50686 1.18079 1.24285 1.21576 0.90486 0.95663 0.89588 1.18364 0.93691 0.92029 0.90403 1.21807 0.97572 0.99732 0.99521 1.21812 0.95830 1.00160 1.00846 1.21039 1.26753 0.99809 1.06583 0.92345 1.24882 0.96254 0.94872 0.97557 1.69821 1.44536 1.11015 1.27184 0.86516 0.80709 0.79917 0.80759 1.19732 1.21097 1.21094 0.91865 0.91129 0.91416 0.84721 0.85471 0.85247 0.84844 0.93085 0.90882 0.91364 0.77052 0.93012 0.92999 0.97691 0.89669 0.95476 0.95456 0.89642 0.97701 0.93126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 7.95 37.16 0.30 -1.16 16 2 C 0.19 2.48 2.57 -69.08 -0.18 2.30 16 3 H 0.11 1.76 6.81 -51.92 -0.35 1.40 16 4 C -0.13 -1.54 4.96 -104.55 -0.52 -2.06 16 5 C -0.08 -0.72 9.10 -39.59 -0.36 -1.08 16 6 C -0.14 -1.04 10.04 -39.58 -0.40 -1.44 16 7 C -0.09 -0.74 10.04 -39.59 -0.40 -1.14 16 8 C -0.16 -1.70 10.03 -39.52 -0.40 -2.09 16 9 C 0.12 1.60 7.25 -39.42 -0.29 1.32 16 10 F -0.12 -2.10 16.73 2.25 0.04 -2.06 16 11 N -0.63 -9.16 2.75 -181.01 -0.50 -9.65 16 12 C 0.08 0.89 9.48 59.85 0.57 1.46 16 13 C 0.70 13.37 8.28 -86.92 -0.72 12.65 16 14 O -0.59 -13.41 15.67 5.28 0.08 -13.32 16 15 N -0.73 -14.06 4.82 -65.23 -0.31 -14.37 16 16 C 0.15 3.36 4.50 -4.04 -0.02 3.34 16 17 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 18 C -0.13 -2.99 8.08 37.16 0.30 -2.69 16 19 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 20 C -0.50 -13.46 8.01 -34.44 -0.28 -13.74 16 21 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 22 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 23 N -0.89 -23.89 9.35 55.43 0.52 -23.37 16 24 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 H 0.06 0.46 5.20 -51.93 -0.27 0.19 16 29 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.14 0.85 5.96 -52.49 -0.31 0.53 16 32 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 33 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.61 6.23 -51.93 -0.32 0.29 16 37 H 0.07 0.76 6.65 -51.93 -0.35 0.42 16 38 H 0.39 6.86 4.01 -40.82 -0.16 6.70 16 39 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 42 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 46 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 47 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 372.15 15.07 5.61 5.61 Total: -1.00 -31.06 372.15 -8.72 -39.78 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -6.88 Total: 5.45 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -2.25 Total: -4.06 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -0.29 Total: -47.40 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.08 Total: -13.32 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.06 -8.72 -39.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459256433.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.526 kcal (2) G-P(sol) polarization free energy of solvation -31.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds