Wall clock time and date at job start Sat Apr 11 2020 00:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47171 * 2 1 4 4 C 1.50704 * 109.46962 * 119.99350 * 2 1 3 5 5 C 1.38221 * 120.01026 * 16.04035 * 4 2 1 6 6 C 1.38220 * 120.02095 * 179.71820 * 5 4 2 7 7 C 1.38272 * 120.05501 * 0.55952 * 6 5 4 8 8 C 1.38171 * 120.02242 * 359.72217 * 7 6 5 9 9 C 1.38436 * 120.01352 * 196.31993 * 4 2 1 10 10 F 1.35101 * 120.02605 * 0.02562 * 9 4 2 11 11 N 1.46495 * 109.47554 * 239.99380 * 2 1 3 12 12 C 1.46499 * 119.99971 * 303.88113 * 11 2 1 13 13 C 1.34781 * 120.00079 * 123.87936 * 11 2 1 14 14 O 1.21594 * 119.99848 * 0.02562 * 13 11 2 15 15 N 1.34774 * 120.00269 * 179.72372 * 13 11 2 16 16 C 1.46493 * 120.00031 * 180.27734 * 15 13 11 17 17 C 1.53004 * 109.47211 * 180.02562 * 16 15 13 18 18 C 1.52996 * 109.47030 * 300.00312 * 17 16 15 19 19 C 1.53005 * 109.46875 * 59.99822 * 17 16 15 20 20 C 1.50697 * 109.47270 * 180.02562 * 17 16 15 21 21 H 1.08000 * 120.00051 * 359.97438 * 20 17 16 22 22 C 1.37882 * 120.00028 * 180.02562 * 20 17 16 23 23 N 1.31518 * 119.99628 * 359.97438 * 22 20 17 24 24 Si 1.86794 * 119.99986 * 179.97438 * 22 20 17 25 25 H 1.48495 * 109.47394 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.46960 * 120.00298 * 24 22 20 27 27 H 1.48502 * 109.46873 * 239.99796 * 24 22 20 28 28 H 1.08998 * 109.46696 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47696 * 300.00487 * 1 2 3 30 30 H 1.09004 * 109.46841 * 60.00434 * 1 2 3 31 31 H 1.07992 * 119.98944 * 0.02562 * 5 4 2 32 32 H 1.08005 * 119.97218 * 180.27969 * 6 5 4 33 33 H 1.07998 * 119.98973 * 179.74540 * 7 6 5 34 34 H 1.07998 * 120.01345 * 180.02562 * 8 7 6 35 35 H 1.08991 * 109.47094 * 264.87786 * 12 11 2 36 36 H 1.08997 * 109.46824 * 24.88049 * 12 11 2 37 37 H 1.09000 * 109.47004 * 144.87828 * 12 11 2 38 38 H 0.97003 * 119.99359 * 0.28392 * 15 13 11 39 39 H 1.08999 * 109.47265 * 300.00095 * 16 15 13 40 40 H 1.08996 * 109.47327 * 60.00354 * 16 15 13 41 41 H 1.09000 * 109.47318 * 59.99513 * 18 17 16 42 42 H 1.08996 * 109.47178 * 179.97438 * 18 17 16 43 43 H 1.09004 * 109.47244 * 299.99483 * 18 17 16 44 44 H 1.08999 * 109.47103 * 60.00397 * 19 17 16 45 45 H 1.09004 * 109.46843 * 179.97438 * 19 17 16 46 46 H 1.09000 * 109.47150 * 300.00289 * 19 17 16 47 47 H 0.96998 * 119.99376 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 1.1782 -1.5142 1.9618 6 6 1.6402 -2.1704 3.0872 7 6 2.9539 -2.0144 3.4894 8 6 3.8079 -1.2066 2.7633 9 6 3.3477 -0.5532 1.6323 10 9 4.1818 0.2372 0.9218 11 7 2.0184 -0.6907 -1.1960 12 6 1.5958 -2.0661 -1.4715 13 6 2.8565 -0.0608 -2.0430 14 8 3.2076 1.0806 -1.8141 15 7 3.3103 -0.6981 -3.1404 16 6 4.2261 -0.0155 -4.0577 17 6 4.5846 -0.9534 -5.2122 18 6 5.2600 -2.2093 -4.6580 19 6 3.3111 -1.3482 -5.9628 20 6 5.5271 -0.2514 -6.1555 21 1 5.8389 0.7624 -5.9522 22 6 5.9906 -0.9031 -7.2788 23 7 5.6105 -2.1376 -7.5265 24 14 7.1583 -0.0328 -8.4484 25 1 7.4302 1.3384 -7.9473 26 1 8.4325 -0.7908 -8.5308 27 1 6.5410 0.0457 -9.7967 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 0.1509 -1.6336 1.6510 32 1 0.9733 -2.8020 3.6554 33 1 3.3126 -2.5243 4.3712 34 1 4.8340 -1.0852 3.0774 35 1 2.3427 -2.7598 -1.0857 36 1 0.6384 -2.2561 -0.9863 37 1 1.4918 -2.2056 -2.5475 38 1 3.0304 -1.6088 -3.3228 39 1 3.7447 0.8790 -4.4529 40 1 5.1331 0.2661 -3.5229 41 1 4.5786 -2.7172 -3.9754 42 1 5.5150 -2.8777 -5.4804 43 1 6.1673 -1.9281 -4.1233 44 1 2.8299 -0.4534 -6.3576 45 1 3.5666 -2.0160 -6.7856 46 1 2.6297 -1.8561 -5.2802 47 1 5.9368 -2.5961 -8.3165 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459256433.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:56 Heat of formation + Delta-G solvation = -62.387290 kcal Electronic energy + Delta-G solvation = -28227.730747 eV Core-core repulsion = 24324.596538 eV Total energy + Delta-G solvation = -3903.134209 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.86606 -41.45889 -40.03227 -38.34281 -37.01544 -35.16965 -33.62708 -32.31069 -31.39339 -30.02262 -27.99093 -27.58962 -27.47905 -26.71656 -24.91218 -23.33632 -22.39410 -20.65762 -20.63566 -19.30401 -18.61651 -17.86184 -17.52864 -17.23260 -17.01055 -16.63346 -16.47875 -16.32506 -15.55557 -15.25159 -15.11401 -14.98357 -14.72811 -14.57551 -14.16794 -14.07881 -13.94231 -13.35277 -13.29807 -13.21195 -13.13377 -13.06635 -12.89634 -12.79262 -12.70475 -12.57730 -12.27268 -12.14829 -11.95511 -11.84790 -11.51041 -11.33364 -11.13011 -10.72218 -10.41418 -10.11461 -9.95231 -9.64771 -9.47609 -8.03689 -6.19198 0.15120 0.27048 1.40549 1.44230 1.54245 1.74606 2.18606 2.45017 2.70794 3.12179 3.19733 3.38540 3.54594 3.76254 4.07524 4.18776 4.21867 4.29693 4.39674 4.41396 4.44575 4.49710 4.60958 4.67854 4.73412 4.81276 4.91316 4.98177 5.00057 5.02755 5.08733 5.12340 5.17178 5.18540 5.33319 5.35972 5.39086 5.49285 5.58241 5.63372 5.64895 5.66224 5.95599 5.98800 6.12519 6.19502 6.42407 6.84373 7.02860 7.48332 7.61134 8.95779 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.022646 B = 0.002960 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.105805 B = 9457.264584 C = 9716.976051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.190 3.810 3 H 0.070 0.930 4 C -0.143 4.143 5 C -0.076 4.076 6 C -0.124 4.124 7 C -0.086 4.086 8 C -0.171 4.171 9 C 0.071 3.929 10 F -0.160 7.160 11 N -0.621 5.621 12 C 0.072 3.928 13 C 0.694 3.306 14 O -0.636 6.636 15 N -0.726 5.726 16 C 0.168 3.832 17 C 0.053 3.947 18 C -0.117 4.117 19 C -0.117 4.117 20 C -0.530 4.530 21 H 0.042 0.958 22 C 0.029 3.971 23 N -0.898 5.898 24 Si 0.946 3.054 25 H -0.277 1.277 26 H -0.280 1.280 27 H -0.279 1.279 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.167 0.833 32 H 0.167 0.833 33 H 0.161 0.839 34 H 0.135 0.865 35 H 0.053 0.947 36 H 0.111 0.889 37 H 0.069 0.931 38 H 0.404 0.596 39 H 0.034 0.966 40 H 0.027 0.973 41 H 0.032 0.968 42 H 0.065 0.935 43 H 0.014 0.986 44 H 0.018 0.982 45 H 0.065 0.935 46 H 0.035 0.965 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.115 -6.164 22.047 26.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.086 3.914 3 H 0.088 0.912 4 C -0.145 4.145 5 C -0.094 4.094 6 C -0.141 4.141 7 C -0.103 4.103 8 C -0.190 4.190 9 C 0.052 3.948 10 F -0.139 7.139 11 N -0.358 5.358 12 C -0.070 4.070 13 C 0.395 3.605 14 O -0.518 6.518 15 N -0.382 5.382 16 C 0.044 3.956 17 C 0.052 3.948 18 C -0.175 4.175 19 C -0.175 4.175 20 C -0.568 4.568 21 H 0.060 0.940 22 C -0.170 4.170 23 N -0.537 5.537 24 Si 0.773 3.227 25 H -0.202 1.202 26 H -0.206 1.206 27 H -0.204 1.204 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.184 0.816 32 H 0.184 0.816 33 H 0.178 0.822 34 H 0.153 0.847 35 H 0.072 0.928 36 H 0.129 0.871 37 H 0.088 0.912 38 H 0.242 0.758 39 H 0.052 0.948 40 H 0.046 0.954 41 H 0.051 0.949 42 H 0.084 0.916 43 H 0.033 0.967 44 H 0.037 0.963 45 H 0.084 0.916 46 H 0.053 0.947 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.801 -5.463 22.004 26.542 hybrid contribution 1.491 0.664 -1.268 2.067 sum -12.310 -4.799 20.736 24.587 Atomic orbital electron populations 1.22180 0.90875 1.04348 1.03471 1.19684 0.96184 0.95239 0.80278 0.91205 1.20337 0.92662 1.02521 0.98988 1.21418 1.00509 0.93456 0.94053 1.21669 0.96024 0.99705 0.96750 1.21433 0.93555 0.95935 0.99423 1.21396 1.02262 1.00139 0.95180 1.18298 0.88995 0.94410 0.93113 1.91525 1.71699 1.72472 1.78182 1.47103 1.49026 1.15968 1.23693 1.21929 1.02223 0.80593 1.02225 1.16218 0.79458 0.84272 0.80517 1.90840 1.64348 1.19495 1.77083 1.45317 1.50411 1.18323 1.24170 1.21104 0.89995 0.95061 0.89450 1.18351 0.93790 0.92209 0.90406 1.21639 0.97647 0.99081 0.99103 1.21638 0.95755 0.99502 1.00588 1.21285 1.28063 0.99573 1.07904 0.93957 1.25445 0.97421 0.95544 0.98637 1.69908 1.44828 1.11520 1.27449 0.85685 0.79159 0.78722 0.79118 1.20210 1.20610 1.20447 0.88904 0.89142 0.92538 0.81570 0.81579 0.82188 0.84747 0.92825 0.87068 0.91192 0.75808 0.94767 0.95407 0.94862 0.91582 0.96717 0.96285 0.91640 0.94653 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 7.95 71.98 0.57 -1.75 16 2 C 0.19 4.78 2.57 44.25 0.11 4.89 16 3 H 0.07 2.35 6.81 -2.38 -0.02 2.34 16 4 C -0.14 -3.15 4.96 -19.82 -0.10 -3.25 16 5 C -0.08 -0.99 9.10 22.26 0.20 -0.78 16 6 C -0.12 -1.26 10.04 22.27 0.22 -1.03 16 7 C -0.09 -1.11 10.04 22.26 0.22 -0.89 16 8 C -0.17 -3.53 10.03 22.31 0.22 -3.30 16 9 C 0.07 1.96 7.25 22.38 0.16 2.12 16 10 F -0.16 -5.97 16.73 44.97 0.75 -5.21 16 11 N -0.62 -17.80 2.75 -844.85 -2.33 -20.12 16 12 C 0.07 1.42 9.48 127.77 1.21 2.63 16 13 C 0.69 27.39 8.28 179.05 1.48 28.87 16 14 O -0.64 -30.80 15.67 -4.01 -0.06 -30.86 16 15 N -0.73 -28.31 4.82 -478.54 -2.31 -30.62 16 16 C 0.17 7.87 4.50 86.38 0.39 8.26 16 17 C 0.05 2.58 0.50 -52.93 -0.03 2.55 16 18 C -0.12 -5.45 8.08 71.98 0.58 -4.87 16 19 C -0.12 -5.35 8.08 71.98 0.58 -4.77 16 20 C -0.53 -29.13 8.01 25.60 0.21 -28.93 16 21 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 22 C 0.03 1.58 5.15 84.66 0.44 2.02 16 23 N -0.90 -48.56 9.35 21.45 0.20 -48.35 16 24 Si 0.95 43.61 29.54 68.60 2.03 45.64 16 25 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 26 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 27 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 28 H 0.09 0.86 5.20 -2.39 -0.01 0.85 16 29 H 0.09 1.05 8.12 -2.39 -0.02 1.03 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.17 1.06 5.96 -2.91 -0.02 1.04 16 32 H 0.17 0.49 8.06 -2.91 -0.02 0.47 16 33 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 34 H 0.13 2.57 8.06 -2.91 -0.02 2.54 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.11 1.33 6.23 -2.39 -0.01 1.32 16 37 H 0.07 1.37 6.65 -2.39 -0.02 1.36 16 38 H 0.40 13.71 4.01 -92.71 -0.37 13.33 16 39 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.03 1.31 6.86 -2.39 -0.02 1.30 16 42 H 0.07 3.36 6.07 -2.39 -0.01 3.34 16 43 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.06 3.28 6.07 -2.38 -0.01 3.27 16 46 H 0.03 1.35 6.86 -2.39 -0.02 1.34 16 47 H 0.26 13.49 8.31 -92.71 -0.77 12.72 16 Total: -1.00 -72.82 372.15 5.38 -67.44 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.61 Total: 20.32 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 6.48 Total: 1.77 kcal Atomic # 7 Polarization: -94.66 SS G_CDS: -4.43 Total: -99.09 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -0.06 Total: -30.86 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.75 Total: -5.21 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -72.82 5.38 -67.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459256433.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.055 kcal (2) G-P(sol) polarization free energy of solvation -72.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds