Wall clock time and date at job start Sat Apr 11 2020 00:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53001 * 109.46658 * 2 1 4 4 C 1.50694 * 109.47006 * 240.00121 * 2 1 3 5 5 H 1.07999 * 119.99989 * 240.00360 * 4 2 1 6 6 C 1.37884 * 119.99884 * 59.99577 * 4 2 1 7 7 N 1.31509 * 120.00249 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99819 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47331 * 59.99916 * 8 6 4 10 10 H 1.48503 * 109.47240 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47262 * 300.00098 * 8 6 4 12 12 C 1.52997 * 109.47002 * 119.99994 * 2 1 3 13 13 N 1.46498 * 109.47331 * 299.99627 * 12 2 1 14 14 C 1.34774 * 120.00038 * 180.02562 * 13 12 2 15 15 O 1.21590 * 119.99950 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00279 * 180.02562 * 14 13 12 17 17 C 1.46501 * 120.00223 * 179.97438 * 16 14 13 18 18 C 1.53005 * 109.47086 * 58.87306 * 17 16 14 19 19 C 1.52997 * 109.47028 * 298.87123 * 17 16 14 20 20 C 1.50701 * 109.47144 * 178.86876 * 17 16 14 21 21 C 1.38267 * 119.98768 * 335.16941 * 20 17 16 22 22 C 1.38227 * 120.04930 * 179.97438 * 21 20 17 23 23 C 1.38209 * 120.02713 * 0.04335 * 22 21 20 24 24 C 1.38447 * 119.97674 * 359.97438 * 23 22 21 25 25 F 1.35097 * 120.02571 * 180.02562 * 24 23 22 26 26 C 1.38176 * 119.98804 * 155.20790 * 20 17 16 27 27 H 1.08998 * 109.46719 * 299.99979 * 1 2 3 28 28 H 1.08998 * 109.47206 * 59.99742 * 1 2 3 29 29 H 1.08998 * 109.46508 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46652 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47305 * 299.99565 * 3 2 1 32 32 H 1.08998 * 109.47538 * 60.00522 * 3 2 1 33 33 H 0.97004 * 120.00196 * 179.97438 * 7 6 4 34 34 H 1.09005 * 109.46606 * 179.97438 * 12 2 1 35 35 H 1.09002 * 109.47069 * 60.00148 * 12 2 1 36 36 H 0.97001 * 119.99843 * 0.02562 * 13 12 2 37 37 H 0.97001 * 119.99661 * 359.97438 * 16 14 13 38 38 H 1.08997 * 109.47153 * 180.02562 * 18 17 16 39 39 H 1.09000 * 109.46881 * 300.00151 * 18 17 16 40 40 H 1.09005 * 109.46944 * 59.99865 * 18 17 16 41 41 H 1.08998 * 109.47243 * 299.99819 * 19 17 16 42 42 H 1.09000 * 109.47299 * 60.00272 * 19 17 16 43 43 H 1.08998 * 109.46722 * 179.97438 * 19 17 16 44 44 H 1.07999 * 119.97593 * 0.04110 * 21 20 17 45 45 H 1.07998 * 119.98529 * 180.02562 * 22 21 20 46 46 H 1.08003 * 120.01732 * 179.97438 * 23 22 21 47 47 H 1.08008 * 120.00728 * 0.25625 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8258 -2.5202 -4.0077 10 1 1.8268 -0.4198 -5.2205 11 1 3.8062 -1.1208 -4.0083 12 6 2.0401 -0.7212 1.2492 13 7 1.5518 -0.0306 2.4454 14 6 1.8778 -0.4908 3.6695 15 8 2.5776 -1.4789 3.7810 16 7 1.4283 0.1442 4.7700 17 6 1.7822 -0.3563 6.1005 18 6 3.3047 -0.3701 6.2519 19 6 1.2397 -1.7766 6.2720 20 6 1.1811 0.5414 7.1512 21 6 0.8894 1.8589 6.8499 22 6 0.3375 2.6832 7.8125 23 6 0.0776 2.1915 9.0777 24 6 0.3697 0.8726 9.3808 25 9 0.1155 0.3908 10.6170 26 6 0.9225 0.0477 8.4156 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 0.7094 1.1618 -3.4844 34 1 3.1301 -0.7216 1.2489 35 1 1.6767 -1.7489 1.2492 36 1 0.9939 0.7579 2.3564 37 1 0.8703 0.9327 4.6810 38 1 3.5680 -0.7430 7.2417 39 1 3.7395 -1.0194 5.4919 40 1 3.6911 0.6418 6.1297 41 1 0.1551 -1.7667 6.1642 42 1 1.6745 -2.4259 5.5121 43 1 1.5035 -2.1491 7.2618 44 1 1.0918 2.2439 5.8614 45 1 0.1097 3.7121 7.5758 46 1 -0.3532 2.8359 9.8298 47 1 1.1549 -0.9802 8.6521 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459256868.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:58 Heat of formation + Delta-G solvation = -69.017771 kcal Electronic energy + Delta-G solvation = -27465.412675 eV Core-core repulsion = 23561.990947 eV Total energy + Delta-G solvation = -3903.421728 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.89785 -41.64805 -40.14904 -38.33651 -36.80664 -34.98912 -33.46011 -32.28621 -31.28219 -30.63799 -28.23983 -27.53002 -27.42036 -26.62194 -24.74574 -23.46850 -22.28391 -20.89900 -20.47102 -19.79065 -18.47811 -17.73556 -17.19891 -17.10179 -16.78586 -16.60827 -16.45897 -16.38284 -15.74907 -15.32854 -14.94904 -14.87753 -14.73354 -14.58484 -14.49199 -14.09417 -13.94900 -13.33158 -13.22869 -13.15053 -13.06577 -12.94545 -12.80852 -12.63250 -12.60067 -12.54102 -12.29153 -12.17034 -12.11405 -11.75731 -11.44447 -11.18962 -10.88385 -10.67658 -10.38254 -10.31615 -9.92454 -9.71410 -9.60184 -8.00270 -6.15554 0.13121 0.21877 1.45339 1.46531 1.52832 1.79353 2.27618 2.47664 2.59615 3.16935 3.23437 3.36701 3.52891 3.79731 4.04607 4.08888 4.15669 4.18260 4.41840 4.45877 4.58277 4.63077 4.72727 4.75548 4.81586 4.89359 4.91034 5.04171 5.06792 5.09424 5.13290 5.14214 5.22693 5.23806 5.31700 5.36676 5.41800 5.45103 5.69066 5.69611 5.70526 5.71068 5.89420 6.11558 6.18721 6.25489 6.46553 6.88913 7.21256 7.52045 7.71902 8.98396 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.029039 B = 0.002441 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.979260 B =11468.845703 C =11980.097478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.053 3.947 3 C -0.120 4.120 4 C -0.528 4.528 5 H 0.044 0.956 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.943 3.057 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.277 1.277 12 C 0.170 3.830 13 N -0.728 5.728 14 C 0.701 3.299 15 O -0.625 6.625 16 N -0.731 5.731 17 C 0.236 3.764 18 C -0.156 4.156 19 C -0.161 4.161 20 C -0.058 4.058 21 C -0.131 4.131 22 C -0.079 4.079 23 C -0.155 4.155 24 C 0.084 3.916 25 F -0.148 7.148 26 C -0.149 4.149 27 H 0.037 0.963 28 H 0.061 0.939 29 H 0.016 0.984 30 H 0.017 0.983 31 H 0.061 0.939 32 H 0.038 0.962 33 H 0.260 0.740 34 H 0.035 0.965 35 H 0.034 0.966 36 H 0.403 0.597 37 H 0.406 0.594 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.083 0.917 44 H 0.142 0.858 45 H 0.163 0.837 46 H 0.154 0.846 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.044 5.881 22.961 23.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.052 3.948 3 C -0.177 4.177 4 C -0.567 4.567 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.770 3.230 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.203 1.203 12 C 0.046 3.954 13 N -0.383 5.383 14 C 0.401 3.599 15 O -0.506 6.506 16 N -0.389 5.389 17 C 0.150 3.850 18 C -0.214 4.214 19 C -0.219 4.219 20 C -0.059 4.059 21 C -0.149 4.149 22 C -0.097 4.097 23 C -0.173 4.173 24 C 0.065 3.935 25 F -0.127 7.127 26 C -0.168 4.168 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.035 0.965 30 H 0.036 0.964 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.240 0.760 37 H 0.244 0.756 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.101 0.899 44 H 0.160 0.840 45 H 0.181 0.819 46 H 0.172 0.828 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.503 5.082 22.942 23.631 hybrid contribution -0.109 -0.161 -1.029 1.047 sum -2.613 4.922 21.913 22.610 Atomic orbital electron populations 1.21663 0.97210 0.98560 1.00321 1.18339 0.93156 0.93039 0.90248 1.21660 0.97881 0.97851 1.00355 1.21257 1.31678 1.12166 0.91609 0.93761 1.25432 0.95175 0.95602 1.00895 1.69896 1.37009 1.23263 1.23610 0.85851 0.78637 0.78828 0.79686 1.20324 1.20862 1.20282 1.21072 0.96637 0.94556 0.83162 1.45232 1.55873 1.33248 1.03977 1.16087 0.80149 0.82700 0.80950 1.90815 1.44314 1.29151 1.86308 1.45250 1.56709 1.33320 1.03655 1.18834 0.94682 0.92534 0.78982 1.22201 0.93597 1.02593 1.03008 1.22275 1.00995 0.95545 1.03078 1.19556 0.98225 0.94633 0.93448 1.21279 0.99744 0.92744 1.01144 1.21322 0.95838 1.01231 0.91286 1.21479 1.02723 0.93757 0.99391 1.17850 1.01754 0.93733 0.80162 1.91485 1.92210 1.88744 1.40248 1.21042 1.01942 1.01226 0.92569 0.94442 0.91970 0.96472 0.96378 0.91990 0.94355 0.93059 0.94645 0.94775 0.76010 0.75579 0.90371 0.92107 0.92245 0.92388 0.92415 0.89853 0.84033 0.81897 0.82843 0.83808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.24 8.08 71.99 0.58 -4.66 16 2 C 0.05 2.41 0.50 -52.93 -0.03 2.38 16 3 C -0.12 -5.20 8.08 71.98 0.58 -4.62 16 4 C -0.53 -27.77 8.01 25.60 0.21 -27.57 16 5 H 0.04 2.38 7.74 -2.91 -0.02 2.35 16 6 C 0.03 1.50 5.15 84.66 0.44 1.94 16 7 N -0.90 -47.57 9.35 21.45 0.20 -47.37 16 8 Si 0.94 42.43 29.54 68.60 2.03 44.46 16 9 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 12 C 0.17 7.16 4.50 86.38 0.39 7.54 16 13 N -0.73 -24.38 4.96 -478.54 -2.37 -26.75 16 14 C 0.70 22.97 7.98 179.06 1.43 24.40 16 15 O -0.62 -25.06 12.55 -4.00 -0.05 -25.11 16 16 N -0.73 -17.20 4.88 -441.44 -2.15 -19.35 16 17 C 0.24 5.08 0.89 2.86 0.00 5.08 16 18 C -0.16 -3.59 8.37 71.98 0.60 -2.99 16 19 C -0.16 -3.69 7.86 71.98 0.57 -3.12 16 20 C -0.06 -0.99 4.80 -19.87 -0.10 -1.09 16 21 C -0.13 -1.81 9.02 22.27 0.20 -1.61 16 22 C -0.08 -0.87 10.04 22.26 0.22 -0.64 16 23 C -0.15 -1.97 10.03 22.31 0.22 -1.75 16 24 C 0.08 1.40 7.30 22.38 0.16 1.57 16 25 F -0.15 -2.78 17.27 44.97 0.78 -2.01 16 26 C -0.15 -2.51 9.12 22.31 0.20 -2.30 16 27 H 0.04 1.36 6.86 -2.39 -0.02 1.34 16 28 H 0.06 3.03 6.07 -2.39 -0.01 3.02 16 29 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.06 3.01 6.07 -2.39 -0.01 3.00 16 32 H 0.04 1.37 6.86 -2.39 -0.02 1.35 16 33 H 0.26 13.30 8.31 -92.71 -0.77 12.53 16 34 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.40 11.59 6.18 -92.71 -0.57 11.02 16 37 H 0.41 7.27 6.42 -92.71 -0.59 6.68 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 39 H 0.06 1.82 6.08 -2.39 -0.01 1.80 16 40 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.06 1.72 6.25 -2.39 -0.01 1.70 16 43 H 0.08 1.51 6.52 -2.39 -0.02 1.49 16 44 H 0.14 1.61 6.42 -2.91 -0.02 1.59 16 45 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 46 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 47 H 0.14 2.19 6.33 -2.91 -0.02 2.17 16 Total: -1.00 -61.91 368.83 3.94 -57.96 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: -0.17 Total: 25.61 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 5.69 Total: -7.44 kcal Atomic # 7 Polarization: -89.15 SS G_CDS: -4.33 Total: -93.48 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.05 Total: -25.11 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.78 Total: -2.01 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -61.91 3.94 -57.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459256868.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.055 kcal (2) G-P(sol) polarization free energy of solvation -61.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds